Wall clock time and date at job start Sat Mar 6 2021 04:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86298 * 109.46955 * 2 1 4 4 C 1.50696 * 109.46869 * 240.00552 * 2 1 3 5 5 C 1.38905 * 119.67775 * 120.00264 * 4 2 1 6 6 C 1.36465 * 120.61713 * 179.72201 * 5 4 2 7 7 C 1.40082 * 119.82960 * 359.97438 * 6 5 4 8 8 C 1.41558 * 133.36420 * 179.97438 * 7 6 5 9 9 C 1.35948 * 107.71845 * 180.02562 * 8 7 6 10 10 C 1.46900 * 125.43454 * 179.97438 * 9 8 7 11 11 O 1.21572 * 119.99909 * 0.02562 * 10 9 8 12 12 O 1.34838 * 120.00174 * 180.02562 * 10 9 8 13 13 C 1.45201 * 117.00322 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47203 * 179.97438 * 13 12 10 15 15 H 1.09004 * 112.85313 * 316.19881 * 14 13 12 16 16 C 1.53779 * 113.61311 * 87.50670 * 14 13 12 17 17 C 1.53781 * 87.08272 * 139.97991 * 16 14 13 18 18 H 1.09000 * 113.61431 * 89.10972 * 17 16 14 19 19 O 1.42893 * 113.61386 * 220.01800 * 17 16 14 20 20 C 1.53780 * 113.61452 * 185.00461 * 14 13 12 21 21 N 1.38193 * 109.13060 * 0.02562 * 9 8 7 22 22 C 1.37474 * 108.78125 * 359.97438 * 21 9 8 23 23 C 1.37713 * 119.66956 * 299.72034 * 4 2 1 24 24 H 0.96700 * 113.99927 * 59.99550 * 1 2 3 25 25 H 1.08994 * 109.47380 * 120.00150 * 2 1 3 26 26 H 1.48503 * 110.00317 * 298.68036 * 3 2 1 27 27 H 1.48502 * 110.00068 * 60.00638 * 3 2 1 28 28 H 1.07995 * 119.68631 * 359.73793 * 5 4 2 29 29 H 1.08003 * 120.08168 * 180.02562 * 6 5 4 30 30 H 1.08000 * 126.13586 * 0.06670 * 8 7 6 31 31 H 1.08992 * 109.46950 * 300.00601 * 13 12 10 32 32 H 1.09002 * 109.46699 * 60.00024 * 13 12 10 33 33 H 1.09000 * 113.61175 * 254.52586 * 16 14 13 34 34 H 1.09001 * 113.61595 * 25.42751 * 16 14 13 35 35 H 0.96703 * 114.00204 * 277.49667 * 19 17 16 36 36 H 1.09006 * 113.61091 * 334.56476 * 20 14 13 37 37 H 1.08992 * 113.61797 * 105.47217 * 20 14 13 38 38 H 0.96999 * 125.61289 * 180.02562 * 21 9 8 39 39 H 1.08001 * 120.09484 * 0.26139 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7295 -0.0287 -2.1404 6 6 3.1995 -0.6548 -3.2581 7 6 2.8761 -1.9975 -3.4927 8 6 3.1962 -2.9077 -4.5286 9 6 2.6016 -4.0944 -4.2349 10 6 2.6799 -5.3119 -5.0533 11 8 3.3179 -5.3086 -6.0882 12 8 2.0443 -6.4330 -4.6567 13 6 2.1649 -7.5979 -5.5150 14 6 1.3836 -8.7636 -4.9054 15 1 1.5405 -8.8627 -3.8313 16 6 -0.0971 -8.7959 -5.3191 17 6 0.0478 -10.3230 -5.4275 18 1 -0.1619 -10.8487 -4.4959 19 8 -0.6363 -10.8847 -6.5493 20 6 1.5465 -10.0843 -5.6761 21 7 1.9107 -3.9725 -3.0443 22 6 2.0667 -2.6912 -2.5713 23 6 1.5992 -2.0304 -1.4389 24 1 -0.3933 0.4418 -0.7650 25 1 1.7924 -0.5138 0.8899 26 1 1.5879 2.4586 -1.2242 27 1 1.5616 2.4678 1.2086 28 1 2.9807 1.0062 -1.9613 29 1 3.8198 -0.1168 -3.9597 30 1 3.8041 -2.6972 -5.3960 31 1 1.7621 -7.3660 -6.5008 32 1 3.2154 -7.8739 -5.6074 33 1 -0.7780 -8.4769 -4.5300 34 1 -0.2947 -8.3072 -6.2732 35 1 -1.5793 -11.0372 -6.3990 36 1 1.7982 -9.9478 -6.7279 37 1 2.1924 -10.8053 -5.1753 38 1 1.4003 -4.6755 -2.6128 39 1 0.9783 -2.5518 -0.7254 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13158384_11354868.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:12:09 Heat of formation + Delta-G solvation = -76.540662 kcal Electronic energy + Delta-G solvation = -23598.149714 eV Core-core repulsion = 19859.896804 eV Total energy + Delta-G solvation = -3738.252910 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.119 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.79026 -41.45864 -40.26616 -39.12691 -37.75360 -37.01596 -36.03462 -33.36787 -31.50926 -30.46302 -29.78047 -27.14844 -26.78744 -24.87780 -23.56840 -23.09310 -22.11080 -21.52209 -20.63704 -19.58598 -18.78627 -18.57477 -18.19256 -17.73883 -17.44634 -16.83861 -16.44549 -16.26432 -15.74060 -15.68940 -15.57407 -15.15980 -14.96611 -14.75641 -14.60927 -14.32469 -14.04827 -13.80032 -13.52625 -13.21336 -12.89977 -12.61347 -12.54939 -12.49129 -12.26514 -12.12882 -12.03599 -11.74183 -11.57491 -11.27696 -11.05087 -10.78838 -10.61048 -9.42898 -8.90962 -4.85510 -0.56303 0.49469 0.70600 1.22063 1.35182 1.66819 1.83254 1.86555 2.02778 2.72096 3.15951 3.33981 3.41549 3.45920 3.54940 3.61127 3.69919 3.79566 3.89752 3.97152 4.09416 4.14008 4.17515 4.23896 4.31516 4.41277 4.49598 4.59218 4.64814 4.70360 4.74429 4.80879 4.91750 4.95709 5.03875 5.08686 5.28925 5.33442 5.36656 5.48419 5.51413 5.94416 6.28123 6.42176 6.50798 6.84521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.082 4.082 3 Si 0.771 3.229 4 C -0.079 4.079 5 C -0.148 4.148 6 C -0.050 4.050 7 C -0.138 4.138 8 C -0.094 4.094 9 C 0.016 3.984 10 C 0.535 3.465 11 O -0.518 6.518 12 O -0.352 6.352 13 C 0.078 3.922 14 C -0.103 4.103 15 H 0.120 0.880 16 C -0.164 4.164 17 C 0.075 3.925 18 H 0.104 0.896 19 O -0.583 6.583 20 C -0.124 4.124 21 N -0.560 5.560 22 C 0.113 3.887 23 C -0.114 4.114 24 H 0.387 0.613 25 H 0.128 0.872 26 H -0.281 1.281 27 H -0.307 1.307 28 H 0.150 0.850 29 H 0.154 0.846 30 H 0.167 0.833 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.396 0.604 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.434 0.566 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.162 -0.308 3.120 3.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.191 4.191 3 Si 0.677 3.323 4 C -0.082 4.082 5 C -0.166 4.166 6 C -0.069 4.069 7 C -0.142 4.142 8 C -0.121 4.121 9 C -0.092 4.092 10 C 0.381 3.619 11 O -0.408 6.408 12 O -0.269 6.269 13 C 0.005 3.995 14 C -0.121 4.121 15 H 0.138 0.862 16 C -0.202 4.202 17 C 0.017 3.983 18 H 0.121 0.879 19 O -0.391 6.391 20 C -0.161 4.161 21 N -0.165 5.165 22 C 0.001 3.999 23 C -0.134 4.134 24 H 0.236 0.764 25 H 0.146 0.854 26 H -0.207 1.207 27 H -0.235 1.235 28 H 0.167 0.833 29 H 0.171 0.829 30 H 0.185 0.815 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.246 0.754 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.275 0.725 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.733 -0.007 3.090 3.176 hybrid contribution -1.903 -0.738 -0.377 2.075 sum -1.169 -0.745 2.713 3.047 Atomic orbital electron populations 1.86574 1.18444 1.80403 1.50253 1.25273 0.83471 1.11926 0.98444 0.93920 0.90347 0.71765 0.76265 1.20134 0.97749 0.93477 0.96792 1.20725 1.00194 1.00827 0.94864 1.20662 0.97602 0.91360 0.97228 1.18400 1.03676 0.95796 0.96373 1.21193 1.00862 0.89977 1.00077 1.18952 1.05877 0.93650 0.90733 1.20055 0.76033 0.82712 0.83112 1.90924 1.40702 1.84569 1.24555 1.86530 1.67636 1.20506 1.52230 1.23285 1.01935 0.81601 0.92724 1.22361 0.95595 0.92292 1.01841 0.86234 1.23769 0.96308 0.97759 1.02331 1.23401 0.92943 0.92150 0.89850 0.87867 1.86487 1.27731 1.85182 1.39713 1.23104 0.95930 0.95743 1.01365 1.41862 1.44374 1.11224 1.19029 1.18530 0.99868 0.84717 0.96751 1.20008 1.02963 0.94483 0.95951 0.76404 0.85422 1.20740 1.23532 0.83277 0.82868 0.81511 0.91178 0.90354 0.89891 0.90268 0.75418 0.89831 0.88908 0.72509 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.45 12.76 -148.98 -1.90 -2.35 16 2 C -0.08 0.20 2.81 71.23 0.20 0.40 16 3 Si 0.77 -2.78 29.75 68.60 2.04 -0.73 16 4 C -0.08 0.11 5.39 -19.83 -0.11 0.01 16 5 C -0.15 0.41 8.59 22.02 0.19 0.60 16 6 C -0.05 0.07 10.06 22.30 0.22 0.29 16 7 C -0.14 -0.35 6.16 -21.36 -0.13 -0.48 16 8 C -0.09 -0.35 10.53 22.56 0.24 -0.11 16 9 C 0.02 0.07 6.99 39.88 0.28 0.35 16 10 C 0.54 3.42 7.94 70.09 0.56 3.97 16 11 O -0.52 -6.07 16.63 19.60 0.33 -5.74 16 12 O -0.35 -1.04 10.23 -57.51 -0.59 -1.62 16 13 C 0.08 0.07 5.31 71.98 0.38 0.45 16 14 C -0.10 0.31 4.02 -10.27 -0.04 0.27 16 15 H 0.12 -0.64 8.14 -2.39 -0.02 -0.66 16 16 C -0.16 0.43 7.46 31.12 0.23 0.66 16 17 C 0.08 -0.20 5.21 31.12 0.16 -0.04 16 18 H 0.10 -0.66 8.14 -2.39 -0.02 -0.68 16 19 O -0.58 -0.43 13.67 -148.98 -2.04 -2.47 16 20 C -0.12 0.28 7.47 31.12 0.23 0.51 16 21 N -0.56 -0.51 6.19 -177.23 -1.10 -1.61 16 22 C 0.11 0.24 7.25 39.14 0.28 0.52 16 23 C -0.11 -0.03 9.62 22.38 0.22 0.19 16 24 H 0.39 -1.72 8.70 -74.06 -0.64 -2.37 16 25 H 0.13 -0.54 7.96 -2.39 -0.02 -0.55 16 26 H -0.28 -0.03 7.10 99.48 0.71 0.68 16 27 H -0.31 -1.43 7.11 99.48 0.71 -0.72 16 28 H 0.15 -1.06 4.82 -2.91 -0.01 -1.08 16 29 H 0.15 -0.92 8.06 -2.91 -0.02 -0.95 16 30 H 0.17 0.26 8.06 -2.91 -0.02 0.23 16 31 H 0.07 0.17 7.84 -2.39 -0.02 0.15 16 32 H 0.08 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 34 H 0.08 0.01 7.90 -2.39 -0.02 -0.01 16 35 H 0.40 -2.91 9.12 -74.06 -0.68 -3.59 16 36 H 0.08 0.02 8.10 -2.38 -0.02 0.00 16 37 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 38 H 0.43 -1.50 8.96 -92.71 -0.83 -2.34 16 39 H 0.13 -0.18 8.06 -2.91 -0.02 -0.20 16 Total: 0.00 -18.42 336.55 -1.33 -19.75 By element: Atomic # 1 Polarization: -11.83 SS G_CDS: -0.99 Total: -12.82 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 2.92 Total: 7.61 kcal Atomic # 7 Polarization: -0.51 SS G_CDS: -1.10 Total: -1.61 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -4.20 Total: -12.19 kcal Atomic # 14 Polarization: -2.78 SS G_CDS: 2.04 Total: -0.73 kcal Total: -18.42 -1.33 -19.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13158384_11354868.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.789 kcal (2) G-P(sol) polarization free energy of solvation -18.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds