Wall clock time and date at job start Sat Mar 6 2021 02:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47449 * 2 1 4 4 C 1.53003 * 109.47191 * 239.99613 * 2 1 3 5 5 O 1.42905 * 109.46924 * 119.99659 * 2 1 3 6 6 C 1.42904 * 113.99955 * 60.00252 * 5 2 1 7 7 H 1.08999 * 112.84801 * 18.79664 * 6 5 2 8 8 C 1.53778 * 113.61684 * 150.00041 * 6 5 2 9 9 C 1.53786 * 87.08211 * 140.06110 * 8 6 5 10 10 H 1.09006 * 113.61053 * 89.19743 * 9 8 6 11 11 C 1.52994 * 113.61518 * 220.01885 * 9 8 6 12 12 O 1.45202 * 109.46919 * 185.00393 * 11 9 8 13 13 C 1.34849 * 116.99677 * 180.02562 * 12 11 9 14 14 O 1.21573 * 120.00092 * 359.97438 * 13 12 11 15 15 C 1.46896 * 119.99870 * 180.27068 * 13 12 11 16 16 C 1.35944 * 125.43555 * 179.74492 * 15 13 12 17 17 C 1.41562 * 107.72181 * 180.02562 * 16 15 13 18 18 C 1.40084 * 133.37251 * 180.02562 * 17 16 15 19 19 C 1.36460 * 119.82991 * 179.97438 * 18 17 16 20 20 C 1.38906 * 120.62200 * 0.02562 * 19 18 17 21 21 C 1.50693 * 119.67518 * 179.97438 * 20 19 18 22 22 O 1.42899 * 109.47449 * 119.98123 * 21 20 19 23 23 Si 1.86301 * 109.47532 * 359.97416 * 21 20 19 24 24 C 1.37715 * 120.64547 * 359.97284 * 20 19 18 25 25 C 1.39186 * 119.81069 * 0.02562 * 24 20 19 26 26 N 1.37485 * 133.16914 * 180.34556 * 25 24 20 27 27 C 1.53785 * 87.08031 * 334.56724 * 9 8 6 28 28 H 1.09010 * 109.47003 * 300.00506 * 1 2 3 29 29 H 1.09002 * 109.47078 * 60.00046 * 1 2 3 30 30 H 1.08994 * 109.47620 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47181 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47326 * 299.99885 * 3 2 1 33 33 H 1.08997 * 109.47637 * 59.99940 * 3 2 1 34 34 H 1.09002 * 109.46985 * 299.99858 * 4 2 1 35 35 H 1.08996 * 109.46764 * 60.00618 * 4 2 1 36 36 H 1.08999 * 109.47157 * 180.02562 * 4 2 1 37 37 H 1.08991 * 113.61593 * 25.51382 * 8 6 5 38 38 H 1.09001 * 113.68753 * 254.61727 * 8 6 5 39 39 H 1.08998 * 109.47242 * 64.99822 * 11 9 8 40 40 H 1.09004 * 109.46797 * 304.99638 * 11 9 8 41 41 H 1.07995 * 126.14446 * 359.96838 * 16 15 13 42 42 H 1.08002 * 120.08430 * 359.94837 * 18 17 16 43 43 H 1.08002 * 119.69291 * 180.02562 * 19 18 17 44 44 H 1.09006 * 109.46628 * 239.97605 * 21 20 19 45 45 H 0.96705 * 113.99390 * 299.99880 * 22 21 20 46 46 H 1.48505 * 109.99615 * 58.68156 * 23 21 20 47 47 H 1.48497 * 110.00201 * 180.02562 * 23 21 20 48 48 H 1.08004 * 120.08633 * 180.02562 * 24 20 19 49 49 H 0.96996 * 125.60545 * 359.97345 * 26 25 24 50 50 H 1.09001 * 113.61176 * 139.97927 * 27 9 8 51 51 H 1.08996 * 113.61627 * 270.88389 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0062 -0.6736 1.1669 6 6 1.5846 -2.0355 1.2646 7 1 1.2521 -2.4451 0.3108 8 6 2.5835 -2.9379 2.0080 9 6 1.3664 -3.6133 2.6617 10 1 0.9752 -4.4553 2.0904 11 6 1.5698 -3.9428 4.1418 12 8 0.4203 -4.6795 4.6360 13 6 0.4411 -5.0485 5.9329 14 8 1.3944 -4.7626 6.6310 15 6 -0.6852 -5.8018 6.5003 16 6 -0.7773 -6.2323 7.7865 17 6 -2.0101 -6.9140 7.9255 18 6 -2.6371 -7.5587 8.9996 19 6 -3.8589 -8.1402 8.8226 20 6 -4.4890 -8.1001 7.5853 21 6 -5.8378 -8.7498 7.4136 22 8 -6.7926 -7.7660 7.0103 23 14 -6.3721 -9.5081 9.0293 24 6 -3.8932 -7.4724 6.5141 25 6 -2.6472 -6.8719 6.6695 26 7 -1.8221 -6.1820 5.8130 27 6 0.6066 -2.2979 2.4221 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6768 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 3.2159 -2.4000 2.7142 38 1 3.1493 -3.5988 1.3514 39 1 1.6796 -3.0180 4.7082 40 1 2.4678 -4.5494 4.2589 41 1 -0.0416 -6.0821 8.5627 42 1 -2.1546 -7.5958 9.9651 43 1 -4.3405 -8.6363 9.6523 44 1 -5.7725 -9.5266 6.6517 45 1 -6.9027 -7.0425 7.6424 46 1 -6.4341 -8.4647 10.0841 47 1 -7.7008 -10.1527 8.8730 48 1 -4.3914 -7.4462 5.5562 49 1 -2.0071 -5.9942 4.8796 50 1 -0.4243 -2.4418 2.0986 51 1 0.6986 -1.5851 3.2415 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13158384_14598394.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 02:48:18 Heat of formation + Delta-G solvation = -74.978277 kcal Electronic energy + Delta-G solvation = -31194.907241 eV Core-core repulsion = 26834.571605 eV Total energy + Delta-G solvation = -4360.335636 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.182 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.78546 -41.48926 -40.77425 -39.16155 -38.58829 -37.44386 -37.01450 -33.93979 -33.36383 -31.50380 -30.45988 -29.86184 -28.37744 -28.35965 -27.12369 -26.67132 -24.88565 -23.67846 -23.15647 -22.11004 -21.51418 -20.89545 -20.65391 -19.56620 -18.69424 -18.34150 -17.83651 -17.68843 -17.41100 -16.89466 -16.53987 -16.28421 -16.00478 -15.92111 -15.62162 -15.51579 -15.26295 -14.78522 -14.75327 -14.65472 -14.56871 -14.38693 -14.05704 -14.04354 -13.51383 -13.35637 -13.24337 -13.20277 -13.02693 -12.82378 -12.68320 -12.61098 -12.55022 -12.47884 -12.30739 -12.12748 -12.08240 -11.90519 -11.68285 -11.57426 -11.38485 -11.22080 -11.04761 -10.61024 -10.39315 -9.42623 -8.90669 -4.85647 -0.55745 0.49667 0.71162 1.23361 1.35192 1.66778 1.83761 1.87227 2.02693 2.69293 2.72318 3.30256 3.41837 3.47063 3.52843 3.61288 3.70111 3.72413 3.78686 3.89085 3.95349 3.97462 4.04584 4.08685 4.14585 4.16278 4.23928 4.31215 4.41493 4.44795 4.51306 4.60358 4.63526 4.65425 4.72919 4.73815 4.76379 4.81168 4.81831 4.88980 4.91780 4.95233 4.96964 5.05444 5.08938 5.15584 5.28245 5.29840 5.31043 5.35978 5.37182 5.48667 5.51661 5.94658 6.28400 6.39286 6.43456 6.50611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.097 3.903 3 C -0.140 4.140 4 C -0.176 4.176 5 O -0.382 6.382 6 C 0.060 3.940 7 H 0.105 0.895 8 C -0.125 4.125 9 C -0.101 4.101 10 H 0.118 0.882 11 C 0.079 3.921 12 O -0.353 6.353 13 C 0.535 3.465 14 O -0.518 6.518 15 C 0.016 3.984 16 C -0.095 4.095 17 C -0.138 4.138 18 C -0.050 4.050 19 C -0.148 4.148 20 C -0.080 4.080 21 C -0.082 4.082 22 O -0.549 6.549 23 Si 0.771 3.229 24 C -0.113 4.113 25 C 0.112 3.888 26 N -0.560 5.560 27 C -0.149 4.149 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.167 0.833 42 H 0.154 0.846 43 H 0.150 0.850 44 H 0.128 0.872 45 H 0.387 0.613 46 H -0.282 1.282 47 H -0.306 1.306 48 H 0.134 0.866 49 H 0.434 0.566 50 H 0.078 0.922 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.721 -2.135 -2.573 3.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.059 3.941 3 C -0.197 4.197 4 C -0.234 4.234 5 O -0.302 6.302 6 C 0.003 3.997 7 H 0.122 0.878 8 C -0.162 4.162 9 C -0.119 4.119 10 H 0.136 0.864 11 C 0.006 3.994 12 O -0.269 6.269 13 C 0.381 3.619 14 O -0.407 6.407 15 C -0.092 4.092 16 C -0.121 4.121 17 C -0.142 4.142 18 C -0.068 4.068 19 C -0.166 4.166 20 C -0.082 4.082 21 C -0.191 4.191 22 O -0.357 6.357 23 Si 0.677 3.323 24 C -0.134 4.134 25 C 0.001 3.999 26 N -0.165 5.165 27 C -0.187 4.187 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.185 0.815 42 H 0.171 0.829 43 H 0.167 0.833 44 H 0.146 0.854 45 H 0.236 0.764 46 H -0.208 1.208 47 H -0.235 1.235 48 H 0.152 0.848 49 H 0.275 0.725 50 H 0.096 0.904 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.880 -2.237 -2.341 3.355 hybrid contribution -0.355 1.437 -0.783 1.674 sum -1.235 -0.800 -3.124 3.453 Atomic orbital electron populations 1.22439 0.94958 1.02743 1.02926 1.21685 0.93693 0.93368 0.85373 1.21795 1.01684 0.93331 1.02904 1.22445 1.01950 1.01166 0.97802 1.88023 1.74228 1.24152 1.43763 1.23666 0.95664 0.82378 0.98037 0.87778 1.23223 0.96261 0.97307 0.99445 1.22338 0.98795 0.98203 0.92602 0.86385 1.23272 0.85941 0.95490 0.94695 1.86534 1.46592 1.67849 1.25952 1.20053 0.84888 0.76381 0.80609 1.90923 1.34674 1.53666 1.61456 1.18955 0.89016 1.07898 0.93284 1.21190 0.97646 0.98774 0.94533 1.18403 0.95959 1.05324 0.94560 1.20659 0.94161 0.94011 0.98019 1.20723 0.96311 1.02591 0.96982 1.20134 0.96607 0.98196 0.93243 1.25272 0.86017 0.94378 1.13452 1.86575 1.61199 1.37941 1.49958 0.93923 0.81891 0.83385 0.73114 1.20002 0.92046 1.00826 1.00500 1.18532 0.93634 0.97567 0.90166 1.41867 1.14792 1.46895 1.12954 1.23613 0.99460 0.96252 0.99372 0.92583 0.90594 0.91920 0.92296 0.89727 0.92536 0.91669 0.90436 0.92183 0.89527 0.89025 0.91163 0.90289 0.81505 0.82870 0.83282 0.85406 0.76414 1.20797 1.23458 0.84818 0.72536 0.90361 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.28 8.38 71.98 0.60 0.88 16 2 C 0.10 0.01 1.11 -10.80 -0.01 0.00 16 3 C -0.14 0.04 8.84 71.98 0.64 0.67 16 4 C -0.18 0.41 8.38 71.98 0.60 1.01 16 5 O -0.38 -1.34 10.00 -148.98 -1.49 -2.83 16 6 C 0.06 -0.05 2.82 31.12 0.09 0.03 16 7 H 0.10 -0.37 5.54 -2.39 -0.01 -0.38 16 8 C -0.12 0.26 7.47 31.12 0.23 0.50 16 9 C -0.10 0.25 4.02 -10.27 -0.04 0.21 16 10 H 0.12 -0.56 8.14 -2.38 -0.02 -0.58 16 11 C 0.08 0.09 5.31 71.98 0.38 0.47 16 12 O -0.35 -1.14 10.23 -57.62 -0.59 -1.73 16 13 C 0.54 3.54 7.94 70.09 0.56 4.10 16 14 O -0.52 -6.15 16.63 19.60 0.33 -5.82 16 15 C 0.02 0.07 6.99 39.88 0.28 0.35 16 16 C -0.09 -0.37 10.53 22.56 0.24 -0.13 16 17 C -0.14 -0.38 6.16 -21.36 -0.13 -0.51 16 18 C -0.05 0.06 10.06 22.30 0.22 0.28 16 19 C -0.15 0.38 8.59 22.01 0.19 0.57 16 20 C -0.08 0.10 5.40 -19.83 -0.11 -0.01 16 21 C -0.08 0.19 2.81 71.23 0.20 0.39 16 22 O -0.55 -0.56 12.76 -148.98 -1.90 -2.46 16 23 Si 0.77 -2.66 29.75 68.60 2.04 -0.62 16 24 C -0.11 -0.05 9.61 22.37 0.22 0.16 16 25 C 0.11 0.27 7.25 39.14 0.28 0.55 16 26 N -0.56 -0.68 6.19 -177.24 -1.10 -1.78 16 27 C -0.15 0.15 7.47 31.12 0.23 0.38 16 28 H 0.06 0.02 8.14 -2.38 -0.02 0.00 16 29 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 30 H 0.06 -0.16 7.02 -2.39 -0.02 -0.17 16 31 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.08 -0.28 8.14 -2.39 -0.02 -0.29 16 33 H 0.06 0.06 8.14 -2.39 -0.02 0.05 16 34 H 0.06 -0.23 6.24 -2.39 -0.01 -0.25 16 35 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 36 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.09 -0.01 8.10 -2.39 -0.02 -0.03 16 38 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.07 0.19 7.84 -2.39 -0.02 0.17 16 40 H 0.08 0.08 8.14 -2.38 -0.02 0.06 16 41 H 0.17 0.29 8.06 -2.91 -0.02 0.26 16 42 H 0.15 -0.89 8.06 -2.91 -0.02 -0.92 16 43 H 0.15 -1.04 4.82 -2.91 -0.01 -1.05 16 44 H 0.13 -0.52 7.96 -2.38 -0.02 -0.54 16 45 H 0.39 -1.64 8.70 -74.05 -0.64 -2.28 16 46 H -0.28 -0.09 7.11 99.48 0.71 0.62 16 47 H -0.31 -1.45 7.11 99.48 0.71 -0.74 16 48 H 0.13 -0.15 8.06 -2.91 -0.02 -0.17 16 49 H 0.43 -1.34 8.96 -92.71 -0.83 -2.17 16 50 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 51 H 0.08 0.15 7.90 -2.39 -0.02 0.13 16 Total: 0.00 -16.37 415.74 1.48 -14.89 By element: Atomic # 1 Polarization: -9.09 SS G_CDS: -0.48 Total: -9.57 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 4.67 Total: 9.91 kcal Atomic # 7 Polarization: -0.68 SS G_CDS: -1.10 Total: -1.78 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -3.65 Total: -12.84 kcal Atomic # 14 Polarization: -2.66 SS G_CDS: 2.04 Total: -0.62 kcal Total: -16.37 1.48 -14.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13158384_14598394.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.089 kcal (2) G-P(sol) polarization free energy of solvation -16.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds