Wall clock time and date at job start Sat Mar 6 2021 04:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86303 * 109.46931 * 2 1 4 4 C 1.86302 * 109.46860 * 240.00472 * 2 1 3 5 5 C 1.86294 * 109.47115 * 120.00068 * 2 1 3 6 6 O 1.45202 * 109.46988 * 60.00468 * 5 2 1 7 7 C 1.34842 * 117.00564 * 74.99674 * 6 5 2 8 8 O 1.21576 * 119.99542 * 0.02562 * 7 6 5 9 9 C 1.46886 * 120.00298 * 179.97438 * 7 6 5 10 10 C 1.35947 * 125.44065 * 179.97438 * 9 7 6 11 11 C 1.41554 * 107.72799 * 180.02562 * 10 9 7 12 12 C 1.40084 * 133.37596 * 180.29413 * 11 10 9 13 13 C 1.36464 * 119.83290 * 180.17787 * 12 11 10 14 14 C 1.38907 * 120.61507 * 359.49166 * 13 12 11 15 15 C 1.50699 * 119.67301 * 180.23641 * 14 13 12 16 16 O 1.42897 * 109.47140 * 245.00407 * 15 14 13 17 17 Si 1.86304 * 109.47310 * 5.00140 * 15 14 13 18 18 H 1.48504 * 109.46639 * 59.99916 * 17 15 14 19 19 H 1.48495 * 109.47199 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46941 * 300.00254 * 17 15 14 21 21 C 1.37702 * 120.65168 * 0.26106 * 14 13 12 22 22 C 1.39197 * 119.81119 * 359.97438 * 21 14 13 23 23 N 1.37471 * 133.16847 * 179.97438 * 22 21 14 24 24 H 1.08999 * 109.46686 * 299.99537 * 1 2 3 25 25 H 1.08992 * 109.47319 * 59.99846 * 1 2 3 26 26 H 1.08994 * 109.46902 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46864 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47080 * 300.00341 * 3 2 1 29 29 H 1.09002 * 109.46698 * 60.00026 * 3 2 1 30 30 H 1.09007 * 109.46675 * 299.99439 * 4 2 1 31 31 H 1.08992 * 109.47414 * 59.99740 * 4 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 33 33 H 1.08999 * 109.47666 * 299.99795 * 5 2 1 34 34 H 1.09000 * 109.46992 * 179.97438 * 5 2 1 35 35 H 1.07997 * 126.13499 * 0.04287 * 10 9 7 36 36 H 1.08000 * 120.08523 * 359.92952 * 12 11 10 37 37 H 1.08002 * 119.69583 * 179.77828 * 13 12 11 38 38 H 1.09000 * 109.46989 * 125.00144 * 15 14 13 39 39 H 0.96699 * 114.00689 * 59.99813 * 16 15 14 40 40 H 1.08001 * 120.09477 * 180.02562 * 21 14 13 41 41 H 0.97001 * 125.61078 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 -1.5212 5 6 2.4840 -0.8782 1.5211 6 8 2.0001 -2.2472 1.5210 7 6 2.5970 -3.1076 0.6714 8 8 3.4977 -2.7236 -0.0492 9 6 2.1597 -4.5088 0.6174 10 6 2.6812 -5.4666 -0.1943 11 6 1.9853 -6.6728 0.0601 12 6 2.0859 -7.9696 -0.4601 13 6 1.2513 -8.9494 -0.0069 14 6 0.3074 -8.6765 0.9750 15 6 -0.6000 -9.7759 1.4638 16 8 -1.9511 -9.4696 1.1132 17 14 -0.1037 -11.3883 0.6733 18 1 1.3003 -11.7065 1.0377 19 1 -0.9974 -12.4717 1.1554 20 1 -0.2178 -11.2717 -0.8027 21 6 0.1923 -7.4111 1.5057 22 6 1.0290 -6.3934 1.0563 23 7 1.1521 -5.0638 1.3832 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.5740 1.7565 -0.0005 28 1 2.1206 2.2703 -0.8900 29 1 2.1206 2.2703 0.8900 30 1 2.1206 -1.9059 -1.5212 31 1 2.1206 -0.3643 -2.4111 32 1 3.5740 -0.8777 -1.5215 33 1 2.1208 -0.3644 2.4111 34 1 3.5740 -0.8786 1.5208 35 1 3.4828 -5.3316 -0.9053 36 1 2.8195 -8.1924 -1.2208 37 1 1.3284 -9.9476 -0.4120 38 1 -0.5162 -9.8614 2.5472 39 1 -2.0997 -9.3787 0.1620 40 1 -0.5445 -7.2089 2.2691 41 1 0.6188 -4.5925 2.0423 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_13158384_4858416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:03:56 Heat of formation + Delta-G solvation = -90.398210 kcal Electronic energy + Delta-G solvation = -22702.328820 eV Core-core repulsion = 19285.714231 eV Total energy + Delta-G solvation = -3416.614589 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 307.120 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.72823 -41.17674 -39.10337 -37.45129 -36.92712 -33.33761 -31.42209 -30.45466 -29.77422 -28.60287 -28.47762 -28.38217 -26.64910 -24.53210 -23.17966 -22.09374 -21.32037 -19.56903 -18.57961 -18.26415 -17.57473 -17.48126 -16.88921 -16.27302 -15.67142 -15.60108 -15.45547 -15.05080 -14.84195 -14.53586 -14.50364 -14.32333 -14.14933 -14.02791 -13.86418 -13.48165 -13.32753 -13.23636 -13.11880 -13.07438 -12.72037 -12.59264 -12.47299 -12.18817 -12.01865 -11.75987 -11.53406 -10.98454 -10.97437 -10.82611 -10.50189 -10.46143 -9.37830 -8.87947 -0.46848 0.48876 0.81379 1.13389 1.32760 1.40827 1.44192 1.52870 1.75884 1.79615 1.91289 1.99143 2.06403 2.46860 2.73209 3.41803 3.62089 3.66416 3.70263 3.95221 4.09623 4.19646 4.24067 4.40577 4.45064 4.55752 4.60238 4.61774 4.63719 4.67147 4.69633 4.82683 4.85381 4.91357 4.91937 5.17899 5.30818 5.37032 5.37883 5.45238 5.48956 5.53600 5.69872 5.94168 6.27550 6.52103 6.64300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 1.000 3.000 3 C -0.446 4.446 4 C -0.438 4.438 5 C -0.237 4.237 6 O -0.339 6.339 7 C 0.515 3.485 8 O -0.473 6.473 9 C 0.032 3.968 10 C -0.093 4.093 11 C -0.120 4.120 12 C -0.047 4.047 13 C -0.155 4.155 14 C -0.086 4.086 15 C -0.081 4.081 16 O -0.538 6.538 17 Si 0.954 3.046 18 H -0.249 1.249 19 H -0.256 1.256 20 H -0.251 1.251 21 C -0.100 4.100 22 C 0.119 3.881 23 N -0.567 5.567 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.162 0.838 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.377 0.623 40 H 0.130 0.870 41 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.960 0.380 0.391 1.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.554 4.554 2 Si 1.196 2.804 3 C -0.555 4.555 4 C -0.546 4.546 5 C -0.356 4.356 6 O -0.255 6.255 7 C 0.359 3.641 8 O -0.359 6.359 9 C -0.076 4.076 10 C -0.119 4.119 11 C -0.125 4.125 12 C -0.066 4.066 13 C -0.174 4.174 14 C -0.088 4.088 15 C -0.192 4.192 16 O -0.344 6.344 17 Si 0.777 3.223 18 H -0.173 1.173 19 H -0.180 1.180 20 H -0.174 1.174 21 C -0.121 4.121 22 C 0.008 3.992 23 N -0.171 5.171 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.130 0.870 34 H 0.102 0.898 35 H 0.179 0.821 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.225 0.775 40 H 0.148 0.852 41 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -0.550 -0.140 0.599 0.825 hybrid contribution -0.099 0.894 0.119 0.907 sum -0.649 0.754 0.718 1.227 Atomic orbital electron populations 1.26069 1.20095 1.04608 1.04665 0.79694 0.67620 0.67192 0.65881 1.26038 1.06559 1.17958 1.04903 1.26247 1.07113 1.07296 1.13911 1.28429 1.05529 0.83170 1.18433 1.86469 1.59182 1.21742 1.58128 1.19956 0.80806 0.84915 0.78449 1.90927 1.28021 1.76895 1.40102 1.19019 0.96923 0.90775 1.00842 1.20981 1.00989 0.89887 1.00035 1.18161 0.99369 0.94571 1.00377 1.20350 0.97856 0.90229 0.98163 1.20548 0.97881 0.99624 0.99308 1.20022 0.97259 0.94757 0.96757 1.25018 0.84038 1.04220 1.05891 1.86521 1.24660 1.93868 1.29307 0.85612 0.80624 0.76025 0.80043 1.17284 1.17990 1.17437 1.19893 0.99497 0.90473 1.02215 1.18357 0.98692 0.84249 0.97859 1.41935 1.31543 1.07885 1.35751 0.91071 0.90859 0.91221 0.90890 0.90570 0.91036 0.91534 0.91742 0.90309 0.87003 0.89806 0.82088 0.85008 0.85828 0.86351 0.77539 0.85162 0.73411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.50 8.65 101.05 0.87 1.38 16 2 Si 1.00 -1.78 12.12 -169.99 -2.06 -3.84 16 3 C -0.45 0.75 8.65 101.05 0.87 1.62 16 4 C -0.44 -0.32 7.10 101.05 0.72 0.40 16 5 C -0.24 0.20 5.40 101.05 0.55 0.74 16 6 O -0.34 -0.30 9.92 -40.88 -0.41 -0.71 16 7 C 0.52 1.09 6.72 34.23 0.23 1.32 16 8 O -0.47 -1.69 12.55 -19.32 -0.24 -1.93 16 9 C 0.03 0.05 6.99 -82.32 -0.58 -0.52 16 10 C -0.09 -0.15 10.53 -39.14 -0.41 -0.56 16 11 C -0.12 -0.19 6.16 -106.93 -0.66 -0.85 16 12 C -0.05 -0.01 10.06 -39.53 -0.40 -0.41 16 13 C -0.15 0.01 8.59 -39.97 -0.34 -0.34 16 14 C -0.09 0.00 5.36 -104.57 -0.56 -0.56 16 15 C -0.08 0.08 2.79 36.01 0.10 0.18 16 16 O -0.54 0.15 12.83 -35.23 -0.45 -0.30 16 17 Si 0.95 -1.05 25.11 -169.99 -4.27 -5.32 16 18 H -0.25 0.11 7.11 56.52 0.40 0.51 16 19 H -0.26 -0.13 7.11 56.52 0.40 0.28 16 20 H -0.25 0.25 7.03 56.52 0.40 0.65 16 21 C -0.10 -0.04 9.69 -39.42 -0.38 -0.42 16 22 C 0.12 0.14 7.25 -83.97 -0.61 -0.47 16 23 N -0.57 -0.22 6.19 -7.37 -0.05 -0.26 16 24 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 25 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 26 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 27 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 28 H 0.08 -0.12 7.96 -51.93 -0.41 -0.53 16 29 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 30 H 0.07 0.13 6.28 -51.92 -0.33 -0.20 16 31 H 0.06 0.01 7.96 -51.93 -0.41 -0.40 16 32 H 0.08 0.13 7.42 -51.93 -0.39 -0.25 16 33 H 0.11 -0.31 7.96 -51.93 -0.41 -0.72 16 34 H 0.08 -0.04 7.52 -51.93 -0.39 -0.43 16 35 H 0.16 0.05 8.06 -52.49 -0.42 -0.37 16 36 H 0.13 -0.22 8.06 -52.49 -0.42 -0.65 16 37 H 0.12 -0.17 4.80 -52.49 -0.25 -0.43 16 38 H 0.12 -0.22 7.96 -51.93 -0.41 -0.63 16 39 H 0.38 -1.27 8.70 45.56 0.40 -0.87 16 40 H 0.13 -0.10 8.06 -52.49 -0.42 -0.52 16 41 H 0.43 -0.76 8.96 -40.82 -0.37 -1.13 16 LS Contribution 343.42 15.07 5.18 5.18 Total: 0.00 -5.89 343.42 -8.01 -13.90 By element: Atomic # 1 Polarization: -3.14 SS G_CDS: -5.11 Total: -8.25 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -0.60 Total: 1.53 kcal Atomic # 7 Polarization: -0.22 SS G_CDS: -0.05 Total: -0.26 kcal Atomic # 8 Polarization: -1.83 SS G_CDS: -1.10 Total: -2.93 kcal Atomic # 14 Polarization: -2.83 SS G_CDS: -6.33 Total: -9.16 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -5.89 -8.01 -13.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13158384_4858416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.499 kcal (2) G-P(sol) polarization free energy of solvation -5.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds