Wall clock time and date at job start Sat Mar 6 2021 04:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86303 * 109.46931 * 2 1 4 4 C 1.86302 * 109.46860 * 240.00472 * 2 1 3 5 5 C 1.86294 * 109.47115 * 120.00068 * 2 1 3 6 6 O 1.45202 * 109.46988 * 60.00468 * 5 2 1 7 7 C 1.34842 * 117.00564 * 74.99674 * 6 5 2 8 8 O 1.21576 * 119.99542 * 0.02562 * 7 6 5 9 9 C 1.46886 * 120.00298 * 179.97438 * 7 6 5 10 10 C 1.35947 * 125.44065 * 179.97438 * 9 7 6 11 11 C 1.41554 * 107.72799 * 180.02562 * 10 9 7 12 12 C 1.40084 * 133.37596 * 180.29413 * 11 10 9 13 13 C 1.36464 * 119.83290 * 180.17787 * 12 11 10 14 14 C 1.38907 * 120.61507 * 359.49166 * 13 12 11 15 15 C 1.50699 * 119.67301 * 180.23641 * 14 13 12 16 16 O 1.42897 * 109.47140 * 245.00407 * 15 14 13 17 17 Si 1.86304 * 109.47310 * 5.00140 * 15 14 13 18 18 H 1.48504 * 109.46639 * 59.99916 * 17 15 14 19 19 H 1.48495 * 109.47199 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46941 * 300.00254 * 17 15 14 21 21 C 1.37702 * 120.65168 * 0.26106 * 14 13 12 22 22 C 1.39197 * 119.81119 * 359.97438 * 21 14 13 23 23 N 1.37471 * 133.16847 * 179.97438 * 22 21 14 24 24 H 1.08999 * 109.46686 * 299.99537 * 1 2 3 25 25 H 1.08992 * 109.47319 * 59.99846 * 1 2 3 26 26 H 1.08994 * 109.46902 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46864 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47080 * 300.00341 * 3 2 1 29 29 H 1.09002 * 109.46698 * 60.00026 * 3 2 1 30 30 H 1.09007 * 109.46675 * 299.99439 * 4 2 1 31 31 H 1.08992 * 109.47414 * 59.99740 * 4 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 33 33 H 1.08999 * 109.47666 * 299.99795 * 5 2 1 34 34 H 1.09000 * 109.46992 * 179.97438 * 5 2 1 35 35 H 1.07997 * 126.13499 * 0.04287 * 10 9 7 36 36 H 1.08000 * 120.08523 * 359.92952 * 12 11 10 37 37 H 1.08002 * 119.69583 * 179.77828 * 13 12 11 38 38 H 1.09000 * 109.46989 * 125.00144 * 15 14 13 39 39 H 0.96699 * 114.00689 * 59.99813 * 16 15 14 40 40 H 1.08001 * 120.09477 * 180.02562 * 21 14 13 41 41 H 0.97001 * 125.61078 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 -1.5212 5 6 2.4840 -0.8782 1.5211 6 8 2.0001 -2.2472 1.5210 7 6 2.5970 -3.1076 0.6714 8 8 3.4977 -2.7236 -0.0492 9 6 2.1597 -4.5088 0.6174 10 6 2.6812 -5.4666 -0.1943 11 6 1.9853 -6.6728 0.0601 12 6 2.0859 -7.9696 -0.4601 13 6 1.2513 -8.9494 -0.0069 14 6 0.3074 -8.6765 0.9750 15 6 -0.6000 -9.7759 1.4638 16 8 -1.9511 -9.4696 1.1132 17 14 -0.1037 -11.3883 0.6733 18 1 1.3003 -11.7065 1.0377 19 1 -0.9974 -12.4717 1.1554 20 1 -0.2178 -11.2717 -0.8027 21 6 0.1923 -7.4111 1.5057 22 6 1.0290 -6.3934 1.0563 23 7 1.1521 -5.0638 1.3832 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.5740 1.7565 -0.0005 28 1 2.1206 2.2703 -0.8900 29 1 2.1206 2.2703 0.8900 30 1 2.1206 -1.9059 -1.5212 31 1 2.1206 -0.3643 -2.4111 32 1 3.5740 -0.8777 -1.5215 33 1 2.1208 -0.3644 2.4111 34 1 3.5740 -0.8786 1.5208 35 1 3.4828 -5.3316 -0.9053 36 1 2.8195 -8.1924 -1.2208 37 1 1.3284 -9.9476 -0.4120 38 1 -0.5162 -9.8614 2.5472 39 1 -2.0997 -9.3787 0.1620 40 1 -0.5445 -7.2089 2.2691 41 1 0.6188 -4.5925 2.0423 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13158384_4858416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:03:55 Heat of formation + Delta-G solvation = -83.522746 kcal Electronic energy + Delta-G solvation = -22702.030677 eV Core-core repulsion = 19285.714231 eV Total energy + Delta-G solvation = -3416.316446 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 307.120 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.77103 -41.26901 -39.07974 -37.56016 -36.89641 -33.35912 -31.44996 -30.46854 -29.70172 -28.56897 -28.39068 -28.35607 -26.62433 -24.53259 -23.21805 -22.10248 -21.39411 -19.62475 -18.59827 -18.26159 -17.64286 -17.52280 -16.88531 -16.21318 -15.65696 -15.61342 -15.45231 -15.02904 -14.82058 -14.57190 -14.52588 -14.30409 -14.07254 -13.95942 -13.82462 -13.43685 -13.26737 -13.22823 -13.10100 -13.02551 -12.71450 -12.56068 -12.50024 -12.12222 -12.01306 -11.89392 -11.49353 -11.02606 -10.88173 -10.79815 -10.46477 -10.39419 -9.41658 -8.90491 -0.52718 0.47345 0.74632 1.21481 1.32112 1.50618 1.52451 1.59293 1.81884 1.85285 1.93775 1.98768 2.06564 2.53664 2.71573 3.50321 3.65736 3.67524 3.73226 3.95348 4.17887 4.20789 4.23274 4.40978 4.48421 4.65979 4.67807 4.73026 4.75758 4.78585 4.79879 4.80999 4.81217 4.85581 4.94560 5.10835 5.28075 5.36082 5.47158 5.50307 5.51208 5.58807 5.62394 5.93685 6.31043 6.53747 6.73697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.062 2.938 3 C -0.452 4.452 4 C -0.458 4.458 5 C -0.256 4.256 6 O -0.338 6.338 7 C 0.516 3.484 8 O -0.494 6.494 9 C 0.019 3.981 10 C -0.101 4.101 11 C -0.138 4.138 12 C -0.053 4.053 13 C -0.160 4.160 14 C -0.085 4.085 15 C -0.078 4.078 16 O -0.552 6.552 17 Si 0.985 3.015 18 H -0.257 1.257 19 H -0.279 1.279 20 H -0.249 1.249 21 C -0.107 4.107 22 C 0.111 3.889 23 N -0.560 5.560 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.136 0.864 34 H 0.079 0.921 35 H 0.166 0.834 36 H 0.149 0.851 37 H 0.137 0.863 38 H 0.127 0.873 39 H 0.390 0.610 40 H 0.140 0.860 41 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.492 0.644 0.897 1.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.254 2.746 3 C -0.560 4.560 4 C -0.563 4.563 5 C -0.373 4.373 6 O -0.254 6.254 7 C 0.360 3.640 8 O -0.382 6.382 9 C -0.089 4.089 10 C -0.127 4.127 11 C -0.142 4.142 12 C -0.072 4.072 13 C -0.179 4.179 14 C -0.087 4.087 15 C -0.189 4.189 16 O -0.359 6.359 17 Si 0.810 3.190 18 H -0.181 1.181 19 H -0.205 1.205 20 H -0.173 1.173 21 C -0.127 4.127 22 C 0.000 4.000 23 N -0.165 5.165 24 H 0.099 0.901 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.154 0.846 34 H 0.098 0.902 35 H 0.183 0.817 36 H 0.166 0.834 37 H 0.155 0.845 38 H 0.144 0.856 39 H 0.239 0.761 40 H 0.158 0.842 41 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -1.086 0.122 1.091 1.544 hybrid contribution 0.052 0.774 -0.055 0.778 sum -1.034 0.896 1.036 1.716 Atomic orbital electron populations 1.26171 1.20627 1.04293 1.05206 0.78759 0.66444 0.66176 0.63219 1.26080 1.06556 1.17872 1.05494 1.26549 1.06331 1.07003 1.16416 1.28776 1.05560 0.82474 1.20441 1.86463 1.58981 1.22425 1.57559 1.20048 0.80512 0.85204 0.78217 1.90914 1.29031 1.77312 1.40980 1.19056 0.97596 0.90748 1.01466 1.21150 1.01223 0.90152 1.00190 1.18375 0.99801 0.95068 1.01005 1.20604 0.98282 0.89824 0.98458 1.20755 0.97702 1.00166 0.99249 1.20193 0.97181 0.94877 0.96465 1.25052 0.83615 1.03718 1.06479 1.86491 1.24900 1.93852 1.30674 0.85166 0.79286 0.74806 0.79721 1.18110 1.20495 1.17309 1.20046 0.99663 0.90439 1.02590 1.18550 0.98900 0.84602 0.97991 1.41897 1.31250 1.07725 1.35660 0.90112 0.90749 0.91970 0.91013 0.90469 0.89966 0.93117 0.91552 0.91674 0.84642 0.90229 0.81659 0.83357 0.84544 0.85560 0.76126 0.84184 0.72408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.21 8.65 113.37 0.98 2.19 16 2 Si 1.06 -3.75 12.12 68.60 0.83 -2.92 16 3 C -0.45 1.85 8.65 113.37 0.98 2.83 16 4 C -0.46 -1.36 7.10 113.37 0.80 -0.56 16 5 C -0.26 0.46 5.40 113.37 0.61 1.07 16 6 O -0.34 -0.75 9.92 -57.55 -0.57 -1.32 16 7 C 0.52 2.84 6.72 70.09 0.47 3.31 16 8 O -0.49 -4.39 12.55 19.59 0.25 -4.14 16 9 C 0.02 0.09 6.99 39.87 0.28 0.37 16 10 C -0.10 -0.45 10.53 22.56 0.24 -0.21 16 11 C -0.14 -0.52 6.16 -21.36 -0.13 -0.66 16 12 C -0.05 -0.04 10.06 22.30 0.22 0.19 16 13 C -0.16 0.07 8.59 22.02 0.19 0.26 16 14 C -0.09 0.03 5.36 -19.83 -0.11 -0.07 16 15 C -0.08 0.20 2.79 71.24 0.20 0.40 16 16 O -0.55 0.61 12.83 -148.98 -1.91 -1.30 16 17 Si 0.99 -2.51 25.11 68.60 1.72 -0.79 16 18 H -0.26 0.33 7.11 99.48 0.71 1.04 16 19 H -0.28 -0.39 7.11 99.48 0.71 0.32 16 20 H -0.25 0.71 7.03 99.48 0.70 1.41 16 21 C -0.11 -0.07 9.69 22.37 0.22 0.14 16 22 C 0.11 0.32 7.25 39.14 0.28 0.60 16 23 N -0.56 -0.82 6.19 -177.24 -1.10 -1.92 16 24 H 0.08 -0.35 7.96 -2.39 -0.02 -0.37 16 25 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 26 H 0.06 -0.05 7.96 -2.39 -0.02 -0.07 16 27 H 0.07 -0.25 7.96 -2.39 -0.02 -0.26 16 28 H 0.08 -0.30 7.96 -2.39 -0.02 -0.32 16 29 H 0.08 -0.48 7.96 -2.39 -0.02 -0.50 16 30 H 0.05 0.31 6.28 -2.38 -0.01 0.29 16 31 H 0.07 0.11 7.96 -2.39 -0.02 0.09 16 32 H 0.06 0.35 7.42 -2.39 -0.02 0.34 16 33 H 0.14 -0.92 7.96 -2.39 -0.02 -0.94 16 34 H 0.08 -0.04 7.52 -2.39 -0.02 -0.06 16 35 H 0.17 0.39 8.06 -2.91 -0.02 0.37 16 36 H 0.15 -0.53 8.06 -2.91 -0.02 -0.55 16 37 H 0.14 -0.49 4.80 -2.91 -0.01 -0.50 16 38 H 0.13 -0.55 7.96 -2.39 -0.02 -0.57 16 39 H 0.39 -2.82 8.70 -74.06 -0.64 -3.46 16 40 H 0.14 -0.26 8.06 -2.91 -0.02 -0.28 16 41 H 0.44 -1.34 8.96 -92.71 -0.83 -2.17 16 Total: 0.00 -13.74 343.42 4.79 -8.94 By element: Atomic # 1 Polarization: -6.74 SS G_CDS: 0.33 Total: -6.41 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 5.24 Total: 9.86 kcal Atomic # 7 Polarization: -0.82 SS G_CDS: -1.10 Total: -1.92 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -2.24 Total: -6.76 kcal Atomic # 14 Polarization: -6.26 SS G_CDS: 2.55 Total: -3.71 kcal Total: -13.74 4.79 -8.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13158384_4858416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.579 kcal (2) G-P(sol) polarization free energy of solvation -13.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds