Wall clock time and date at job start Sat Mar 6 2021 05:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86301 * 109.47258 * 2 1 4 4 C 1.50704 * 109.46805 * 119.99848 * 2 1 3 5 5 C 1.38323 * 119.87919 * 65.00170 * 4 2 1 6 6 C 1.38019 * 120.11786 * 180.02562 * 5 4 2 7 7 C 1.39330 * 119.88090 * 359.97438 * 6 5 4 8 8 C 1.48393 * 120.12065 * 179.97438 * 7 6 5 9 9 C 1.39321 * 120.11925 * 56.76392 * 8 7 6 10 10 C 1.50695 * 120.05952 * 359.97188 * 9 8 7 11 11 C 1.50702 * 109.46891 * 81.14471 * 10 9 8 12 12 O 1.20819 * 120.00220 * 5.66744 * 11 10 9 13 13 O 1.34228 * 120.00233 * 185.67520 * 11 10 9 14 14 C 1.45203 * 117.00383 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.46947 * 179.97438 * 14 13 11 16 16 H 1.09001 * 109.47479 * 55.00054 * 15 14 13 17 17 C 1.53000 * 109.46569 * 174.99891 * 15 14 13 18 18 C 1.53006 * 109.46947 * 179.97438 * 17 15 14 19 19 C 1.52995 * 109.47076 * 300.00443 * 18 17 15 20 20 H 1.09002 * 109.47079 * 299.99206 * 19 18 17 21 21 O 1.42903 * 109.47086 * 180.02562 * 19 18 17 22 22 C 1.53000 * 109.47594 * 59.99954 * 19 18 17 23 23 C 1.52999 * 109.47016 * 294.99494 * 15 14 13 24 24 C 1.38043 * 119.87469 * 180.25360 * 9 8 7 25 25 C 1.38297 * 120.12328 * 359.44594 * 24 9 8 26 26 C 1.38342 * 120.24055 * 0.55109 * 25 24 9 27 27 C 1.38005 * 120.12410 * 359.72755 * 26 25 24 28 28 C 1.39338 * 119.76112 * 0.24817 * 7 6 5 29 29 C 1.38020 * 119.87386 * 359.54129 * 28 7 6 30 30 H 0.96699 * 113.99526 * 60.00129 * 1 2 3 31 31 H 1.09001 * 109.47001 * 239.99324 * 2 1 3 32 32 H 1.48494 * 110.00014 * 60.00034 * 3 2 1 33 33 H 1.48504 * 109.99976 * 181.31799 * 3 2 1 34 34 H 1.08001 * 119.93696 * 359.97438 * 5 4 2 35 35 H 1.08005 * 120.05730 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47633 * 321.14011 * 10 9 8 37 37 H 1.09001 * 109.47360 * 201.13621 * 10 9 8 38 38 H 1.09000 * 109.46603 * 59.99748 * 14 13 11 39 39 H 1.08996 * 109.46571 * 300.00068 * 14 13 11 40 40 H 1.09001 * 109.47087 * 59.99923 * 17 15 14 41 41 H 1.08999 * 109.47522 * 299.99629 * 17 15 14 42 42 H 1.09002 * 109.46519 * 59.99992 * 18 17 15 43 43 H 1.09002 * 109.46934 * 180.02562 * 18 17 15 44 44 H 0.96693 * 114.00628 * 180.02562 * 21 19 18 45 45 H 1.09001 * 109.47087 * 59.99826 * 22 19 18 46 46 H 1.09000 * 109.47037 * 179.97438 * 22 19 18 47 47 H 1.09002 * 109.47022 * 60.00820 * 23 15 14 48 48 H 1.08991 * 109.47483 * 300.00480 * 23 15 14 49 49 H 1.07998 * 119.93643 * 179.71694 * 24 9 8 50 50 H 1.07994 * 119.87807 * 180.25558 * 25 24 9 51 51 H 1.08000 * 119.94043 * 179.74963 * 26 25 24 52 52 H 1.07997 * 120.06172 * 179.97438 * 27 26 25 53 53 H 1.07997 * 120.06341 * 179.72838 * 28 7 6 54 54 H 1.08004 * 119.94284 * 180.20335 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6830 -2.0611 1.3960 6 6 2.1403 -2.7165 2.5213 7 6 2.8535 -2.0153 3.4913 8 6 3.3471 -2.7145 4.7035 9 6 4.1776 -3.8262 4.5799 10 6 4.5766 -4.3222 3.2140 11 6 5.7183 -3.4892 2.6908 12 8 6.2299 -2.6535 3.3976 13 8 6.1667 -3.6755 1.4394 14 6 7.2688 -2.8372 1.0024 15 6 7.6393 -3.1923 -0.4390 16 1 6.7552 -3.1127 -1.0716 17 6 8.7147 -2.2271 -0.9416 18 6 9.0858 -2.5826 -2.3828 19 6 9.6219 -4.0146 -2.4330 20 1 10.5059 -4.0940 -1.8002 21 8 9.9690 -4.3464 -3.7789 22 6 8.5465 -4.9799 -1.9303 23 6 8.1754 -4.6244 -0.4896 24 6 4.6296 -4.4760 5.7108 25 6 4.2688 -4.0185 6.9651 26 6 3.4444 -2.9150 7.0936 27 6 2.9821 -2.2612 5.9697 28 6 3.0967 -0.6538 3.3217 29 6 2.6386 -0.0093 2.1905 30 1 -0.3932 0.4417 -0.7651 31 1 1.7923 -0.5139 -0.8899 32 1 1.5616 2.4679 1.2084 33 1 3.5347 1.7702 -0.0321 34 1 1.1298 -2.6035 0.6437 35 1 1.9456 -3.7711 2.6497 36 1 3.7272 -4.2415 2.5356 37 1 4.8889 -5.3642 3.2827 38 1 8.1300 -3.0025 1.6499 39 1 6.9712 -1.7899 1.0540 40 1 9.5988 -2.3067 -0.3090 41 1 8.3329 -1.2068 -0.9055 42 1 8.2018 -2.5032 -3.0156 43 1 9.8523 -1.8952 -2.7407 44 1 10.3167 -5.2423 -3.8861 45 1 7.6626 -4.9005 -2.5632 46 1 8.9284 -6.0001 -1.9665 47 1 7.4092 -5.3121 -0.1316 48 1 9.0594 -4.7041 0.1429 49 1 5.2697 -5.3407 5.6160 50 1 4.6280 -4.5274 7.8472 51 1 3.1624 -2.5643 8.0754 52 1 2.3382 -1.4001 6.0712 53 1 3.6451 -0.1045 4.0726 54 1 2.8293 1.0453 2.0564 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13158400_16737258.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:43:45 Heat of formation + Delta-G solvation = -124.356026 kcal Electronic energy + Delta-G solvation = -35803.407869 eV Core-core repulsion = 31249.904683 eV Total energy + Delta-G solvation = -4553.503186 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.186 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -41.94121 -41.03254 -40.11515 -39.70455 -37.82523 -37.57427 -36.57614 -34.55285 -33.67643 -32.20114 -31.98856 -31.86126 -30.90333 -29.24057 -26.80403 -26.44390 -24.25387 -23.88652 -23.53797 -23.20609 -22.30553 -21.95098 -21.46192 -20.88131 -18.81201 -18.41887 -18.39771 -18.21220 -17.80765 -17.52755 -17.04507 -16.89726 -16.56108 -16.45508 -16.05805 -15.78830 -15.54027 -15.38983 -15.19375 -14.92494 -14.83964 -14.57288 -14.42305 -14.26629 -14.10932 -13.94716 -13.81746 -13.69886 -13.59148 -13.39570 -13.24674 -13.14283 -13.11131 -12.58587 -12.56754 -12.30629 -12.18433 -12.16052 -12.10182 -11.95715 -11.79768 -11.74387 -11.65271 -11.52050 -11.13124 -10.73006 -10.45193 -10.23200 -10.12524 -9.88517 -9.37535 -5.02838 -0.26605 0.17207 0.25120 0.47197 1.10553 1.23980 1.55909 1.61415 1.90894 2.42940 2.74616 3.18256 3.30410 3.41104 3.49488 3.56612 3.59644 3.65482 3.69817 3.73710 3.79322 3.86220 3.92310 4.00112 4.07381 4.10726 4.16346 4.22608 4.24333 4.30860 4.31974 4.33664 4.38731 4.43147 4.43238 4.44197 4.50001 4.54425 4.56757 4.71675 4.77397 4.81186 4.84734 4.91953 4.97578 5.01475 5.04754 5.11676 5.14021 5.16283 5.24143 5.27895 5.30513 5.32499 5.40463 5.42480 5.48220 5.50596 5.75323 5.94199 6.64488 6.85523 6.87907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.073 4.073 3 Si 0.766 3.234 4 C -0.089 4.089 5 C -0.088 4.088 6 C -0.110 4.110 7 C -0.048 4.048 8 C -0.049 4.049 9 C -0.074 4.074 10 C -0.081 4.081 11 C 0.464 3.536 12 O -0.533 6.533 13 O -0.353 6.353 14 C 0.072 3.928 15 C -0.081 4.081 16 H 0.083 0.917 17 C -0.107 4.107 18 C -0.111 4.111 19 C 0.100 3.900 20 H 0.060 0.940 21 O -0.589 6.589 22 C -0.145 4.145 23 C -0.108 4.108 24 C -0.109 4.109 25 C -0.121 4.121 26 C -0.119 4.119 27 C -0.121 4.121 28 C -0.111 4.111 29 C -0.139 4.139 30 H 0.404 0.596 31 H 0.099 0.901 32 H -0.299 1.299 33 H -0.294 1.294 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.130 0.870 37 H 0.147 0.853 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.394 0.606 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.146 0.854 50 H 0.147 0.853 51 H 0.143 0.857 52 H 0.125 0.875 53 H 0.120 0.880 54 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.044 -3.756 -3.206 5.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.183 4.183 3 Si 0.674 3.326 4 C -0.089 4.089 5 C -0.106 4.106 6 C -0.128 4.128 7 C -0.048 4.048 8 C -0.049 4.049 9 C -0.075 4.075 10 C -0.118 4.118 11 C 0.308 3.692 12 O -0.422 6.422 13 O -0.270 6.270 14 C -0.002 4.002 15 C -0.099 4.099 16 H 0.101 0.899 17 C -0.144 4.144 18 C -0.149 4.149 19 C 0.042 3.958 20 H 0.078 0.922 21 O -0.398 6.398 22 C -0.183 4.183 23 C -0.146 4.146 24 C -0.127 4.127 25 C -0.139 4.139 26 C -0.137 4.137 27 C -0.139 4.139 28 C -0.129 4.129 29 C -0.157 4.157 30 H 0.256 0.744 31 H 0.117 0.883 32 H -0.228 1.228 33 H -0.222 1.222 34 H 0.168 0.832 35 H 0.171 0.829 36 H 0.148 0.852 37 H 0.165 0.835 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.243 0.757 45 H 0.084 0.916 46 H 0.096 0.904 47 H 0.092 0.908 48 H 0.086 0.914 49 H 0.164 0.836 50 H 0.164 0.836 51 H 0.160 0.840 52 H 0.143 0.857 53 H 0.138 0.862 54 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.505 -2.602 -2.182 3.433 hybrid contribution 0.510 -0.351 0.730 0.957 sum 0.005 -2.952 -1.452 3.290 Atomic orbital electron populations 1.86443 1.16837 1.82326 1.51475 1.24705 0.86107 1.10238 0.97253 0.94639 0.77220 0.76199 0.84583 1.19760 0.98356 0.95071 0.95674 1.21209 0.97974 0.93366 0.98061 1.21543 0.97120 1.01070 0.93057 1.18909 0.98402 0.92961 0.94495 1.18696 0.98405 0.95345 0.92439 1.19393 0.98004 0.95651 0.94407 1.20627 0.95739 1.00944 0.94459 1.24010 0.83650 0.82006 0.79546 1.90686 1.58149 1.34739 1.58591 1.86470 1.49496 1.60021 1.31022 1.23185 0.87172 0.93383 0.96459 1.21206 0.99403 0.96630 0.92669 0.89892 1.21443 0.98383 0.98968 0.95625 1.21436 1.01523 0.95302 0.96613 1.21896 0.96305 0.94800 0.82803 0.92168 1.86478 1.86572 1.38304 1.28434 1.22197 0.99686 0.99795 0.96581 1.21487 1.01358 0.95257 0.96467 1.21284 0.99223 1.00453 0.91714 1.21533 0.97493 0.96633 0.98211 1.21419 0.97345 0.95858 0.99071 1.21352 1.00495 1.00304 0.91705 1.21175 0.99781 0.94402 0.97510 1.20933 1.00726 0.98869 0.95173 0.74437 0.88293 1.22761 1.22155 0.83207 0.82874 0.85200 0.83547 0.91216 0.92245 0.90719 0.90622 0.91593 0.91242 0.75664 0.91612 0.90352 0.90791 0.91397 0.83587 0.83557 0.83957 0.85674 0.86169 0.87038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.05 12.81 -148.98 -1.91 -1.86 16 2 C -0.07 -0.02 2.79 71.24 0.20 0.18 16 3 Si 0.77 0.13 29.84 68.60 2.05 2.18 16 4 C -0.09 -0.53 5.39 -19.82 -0.11 -0.64 16 5 C -0.09 -0.31 9.67 22.24 0.21 -0.09 16 6 C -0.11 -0.35 7.82 22.48 0.18 -0.17 16 7 C -0.05 -0.32 4.78 -20.04 -0.10 -0.42 16 8 C -0.05 -0.31 5.40 -20.04 -0.11 -0.41 16 9 C -0.07 -0.27 4.38 -19.65 -0.09 -0.36 16 10 C -0.08 0.00 5.42 29.10 0.16 0.16 16 11 C 0.46 2.86 7.79 71.24 0.56 3.41 16 12 O -0.53 -7.06 15.79 21.98 0.35 -6.71 16 13 O -0.35 -1.45 9.76 -51.40 -0.50 -1.95 16 14 C 0.07 0.19 4.84 71.98 0.35 0.54 16 15 C -0.08 0.08 2.44 -10.79 -0.03 0.05 16 16 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 17 C -0.11 0.19 5.20 30.60 0.16 0.35 16 18 C -0.11 0.00 5.57 30.59 0.17 0.18 16 19 C 0.10 -0.07 3.47 30.59 0.11 0.03 16 20 H 0.06 -0.12 8.14 -2.39 -0.02 -0.13 16 21 O -0.59 -1.01 13.32 -148.98 -1.98 -2.99 16 22 C -0.14 0.38 5.54 30.58 0.17 0.55 16 23 C -0.11 0.25 5.10 30.58 0.16 0.41 16 24 C -0.11 -0.18 9.66 22.24 0.21 0.03 16 25 C -0.12 -0.17 10.04 22.31 0.22 0.06 16 26 C -0.12 -0.33 10.03 22.24 0.22 -0.10 16 27 C -0.12 -0.66 9.62 22.48 0.22 -0.45 16 28 C -0.11 -1.04 9.62 22.48 0.22 -0.82 16 29 C -0.14 -1.26 8.65 22.24 0.19 -1.07 16 30 H 0.40 -4.33 8.74 -74.06 -0.65 -4.98 16 31 H 0.10 -0.44 7.96 -2.39 -0.02 -0.45 16 32 H -0.30 -2.44 7.04 99.48 0.70 -1.74 16 33 H -0.29 -1.87 7.11 99.48 0.71 -1.17 16 34 H 0.15 -0.11 8.06 -2.91 -0.02 -0.13 16 35 H 0.15 -0.31 7.11 -2.91 -0.02 -0.33 16 36 H 0.13 -0.32 4.83 -2.39 -0.01 -0.33 16 37 H 0.15 -0.93 8.01 -2.39 -0.02 -0.94 16 38 H 0.07 0.21 8.13 -2.39 -0.02 0.19 16 39 H 0.06 0.29 8.13 -2.39 -0.02 0.27 16 40 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 41 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 42 H 0.07 0.08 8.14 -2.39 -0.02 0.07 16 43 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 44 H 0.39 -2.45 9.08 -74.06 -0.67 -3.12 16 45 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 46 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 47 H 0.07 -0.13 7.82 -2.39 -0.02 -0.15 16 48 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 49 H 0.15 -0.47 8.04 -2.91 -0.02 -0.49 16 50 H 0.15 -0.49 8.06 -2.91 -0.02 -0.51 16 51 H 0.14 -0.20 8.06 -2.91 -0.02 -0.23 16 52 H 0.13 0.53 8.06 -2.91 -0.02 0.51 16 53 H 0.12 1.12 8.06 -2.91 -0.02 1.10 16 54 H 0.11 1.02 4.85 -2.91 -0.01 1.00 16 Total: 0.00 -23.47 435.20 0.91 -22.57 By element: Atomic # 1 Polarization: -12.27 SS G_CDS: -0.37 Total: -12.64 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 3.28 Total: 1.41 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -4.05 Total: -13.52 kcal Atomic # 14 Polarization: 0.13 SS G_CDS: 2.05 Total: 2.18 kcal Total: -23.47 0.91 -22.57 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13158400_16737258.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.790 kcal (2) G-P(sol) polarization free energy of solvation -23.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds