Wall clock time and date at job start Sat Mar 6 2021 06:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00171 * 2 1 4 4 C 1.53000 * 112.90886 * 69.26632 * 3 2 1 5 5 F 1.39899 * 109.47038 * 283.45420 * 4 3 2 6 6 F 1.39898 * 109.47193 * 43.45297 * 4 3 2 7 7 F 1.39899 * 109.47395 * 163.45649 * 4 3 2 8 8 C 1.53781 * 113.61463 * 298.01411 * 3 2 1 9 9 C 1.53782 * 87.07902 * 270.88213 * 8 3 2 10 10 H 1.09000 * 113.61418 * 219.92921 * 9 8 3 11 11 C 1.53004 * 113.61566 * 89.12004 * 9 8 3 12 12 O 1.45196 * 109.47600 * 174.99902 * 11 9 8 13 13 C 1.34228 * 117.00287 * 179.97438 * 12 11 9 14 14 O 1.20824 * 119.99540 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99817 * 179.97438 * 13 12 11 16 16 C 1.50701 * 109.46914 * 185.43820 * 15 13 12 17 17 C 1.39313 * 120.06177 * 83.66915 * 16 15 13 18 18 C 1.48392 * 120.12419 * 0.02562 * 17 16 15 19 19 C 1.39331 * 120.12115 * 235.90372 * 18 17 16 20 20 C 1.38022 * 119.87724 * 179.71682 * 19 18 17 21 21 C 1.38317 * 120.11765 * 0.57280 * 20 19 18 22 22 C 1.50699 * 119.87692 * 179.69878 * 21 20 19 23 23 O 1.42899 * 109.47716 * 244.98136 * 22 21 20 24 24 Si 1.86303 * 109.47285 * 4.97852 * 22 21 20 25 25 C 1.38315 * 120.24887 * 359.67986 * 21 20 19 26 26 C 1.38025 * 120.11981 * 0.03997 * 25 21 20 27 27 C 1.39363 * 119.75781 * 179.97438 * 17 16 15 28 28 C 1.37994 * 119.87684 * 0.02562 * 27 17 16 29 29 C 1.38336 * 120.12279 * 0.02562 * 28 27 17 30 30 C 1.38046 * 120.06302 * 263.92654 * 16 15 13 31 31 C 1.53776 * 87.08528 * 334.56702 * 9 8 3 32 32 H 1.09000 * 109.47221 * 299.37568 * 1 2 3 33 33 H 1.08999 * 109.47025 * 59.37851 * 1 2 3 34 34 H 1.08997 * 109.46939 * 179.38001 * 1 2 3 35 35 H 1.09004 * 113.61414 * 156.33604 * 8 3 2 36 36 H 1.08994 * 113.61445 * 25.43160 * 8 3 2 37 37 H 1.08995 * 109.47117 * 54.98889 * 11 9 8 38 38 H 1.09010 * 109.46565 * 294.99814 * 11 9 8 39 39 H 1.09000 * 109.47137 * 65.43696 * 15 13 12 40 40 H 1.09003 * 109.47274 * 305.43619 * 15 13 12 41 41 H 1.08006 * 120.06578 * 359.96957 * 19 18 17 42 42 H 1.08002 * 119.94185 * 180.27122 * 20 19 18 43 43 H 1.09003 * 109.47485 * 124.97862 * 22 21 20 44 44 H 0.96696 * 114.00879 * 180.02562 * 23 22 21 45 45 H 1.48497 * 110.00258 * 178.68190 * 24 22 21 46 46 H 1.48500 * 110.00007 * 300.00072 * 24 22 21 47 47 H 1.07997 * 119.94461 * 180.02562 * 25 21 20 48 48 H 1.07996 * 120.06288 * 180.02562 * 26 25 21 49 49 H 1.08005 * 120.06122 * 179.97438 * 27 17 16 50 50 H 1.08000 * 119.93689 * 180.02562 * 28 27 17 51 51 H 1.08002 * 119.87807 * 179.97438 * 29 28 27 52 52 H 1.08003 * 119.93538 * 359.97438 * 30 16 15 53 53 H 1.08995 * 113.61741 * 139.98037 * 31 9 8 54 54 H 1.08999 * 113.61320 * 270.88763 * 31 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7967 2.0524 1.3181 5 9 0.4820 2.5271 1.3773 6 9 2.0273 1.1830 2.3895 7 9 2.6854 3.1303 1.3925 8 6 1.6562 2.1374 -1.2439 9 6 2.8999 1.5255 -1.9102 10 1 3.4650 2.2350 -2.5146 11 6 2.6189 0.2123 -2.6433 12 8 3.8195 -0.2228 -3.3343 13 6 3.7410 -1.3677 -4.0305 14 8 2.7035 -1.9861 -4.0611 15 6 4.9469 -1.8817 -4.7739 16 6 4.5619 -3.0986 -5.5752 17 6 3.9830 -2.9511 -6.8337 18 6 3.7441 -1.5960 -7.3893 19 6 2.4640 -1.2209 -7.7918 20 6 2.2465 0.0427 -8.3025 21 6 3.2986 0.9320 -8.4260 22 6 3.0562 2.3081 -8.9906 23 8 3.7563 2.4452 -10.2288 24 14 1.2314 2.5482 -9.2794 25 6 4.5725 0.5632 -8.0330 26 6 4.8003 -0.6959 -7.5156 27 6 3.6299 -4.0808 -7.5694 28 6 3.8547 -5.3385 -7.0482 29 6 4.4290 -5.4792 -5.7975 30 6 4.7774 -4.3616 -5.0612 31 6 3.4664 1.3314 -0.4938 32 1 -0.3633 0.5041 0.8955 33 1 -0.3633 0.5235 -0.8844 34 1 -0.3633 -1.0276 -0.0111 35 1 1.7306 3.2132 -1.0853 36 1 0.7187 1.8417 -1.7146 37 1 1.8181 0.3643 -3.3669 38 1 2.3183 -0.5487 -1.9231 39 1 5.7270 -2.1481 -4.0608 40 1 5.3174 -1.1070 -5.4452 41 1 1.6427 -1.9163 -7.7006 42 1 1.2538 0.3361 -8.6107 43 1 3.4143 3.0584 -8.2857 44 1 3.6456 3.3086 -10.6498 45 1 0.9758 3.9128 -9.8063 46 1 0.7308 1.5313 -10.2388 47 1 5.3903 1.2616 -8.1312 48 1 5.7952 -0.9828 -7.2086 49 1 3.1804 -3.9720 -8.5455 50 1 3.5819 -6.2146 -7.6177 51 1 4.6028 -6.4655 -5.3932 52 1 5.2227 -4.4771 -4.0841 53 1 3.9901 0.3851 -0.3590 54 1 4.0355 2.1869 -0.1302 There are 80 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 80 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13158400_17321610.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:26:55 Heat of formation + Delta-G solvation = -211.871406 kcal Electronic energy + Delta-G solvation = -44338.603559 eV Core-core repulsion = 38372.943495 eV Total energy + Delta-G solvation = -5965.660064 eV No. of doubly occupied orbitals = 80 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 437.158 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -51.22831 -48.76033 -48.70477 -41.92584 -41.34354 -40.68290 -39.64207 -37.72089 -37.68443 -36.81207 -34.46197 -33.56772 -32.00437 -30.93721 -30.72398 -29.11806 -28.18796 -27.20011 -26.70794 -26.53846 -24.10554 -23.57826 -23.32020 -22.95336 -21.86757 -21.34594 -20.58987 -19.77523 -19.52159 -19.21639 -18.66163 -18.55659 -18.24894 -17.67452 -17.35981 -17.17469 -16.99523 -16.77357 -16.46298 -16.37737 -16.05901 -15.79123 -15.63881 -15.57585 -15.56854 -15.30659 -15.23301 -15.10819 -14.89466 -14.83329 -14.71899 -14.64577 -14.43554 -14.28825 -14.06486 -14.03416 -13.78393 -13.70292 -13.57349 -13.32529 -13.22939 -13.13829 -12.98009 -12.73334 -12.48122 -12.33207 -12.24958 -12.07752 -11.97632 -11.81081 -11.72440 -11.64585 -11.61284 -11.45776 -10.76742 -10.52302 -10.18484 -9.94896 -9.80096 -9.24977 -4.96565 -0.13458 0.33567 0.37250 0.58674 1.23975 1.27236 1.55646 1.55720 1.68465 1.91426 2.11252 2.56517 2.59193 2.66024 2.83017 2.92601 3.33138 3.35368 3.36942 3.49083 3.50942 3.62687 3.71690 3.84130 3.86152 3.91229 3.99495 4.03331 4.16284 4.23873 4.26627 4.28782 4.32148 4.34455 4.42654 4.42875 4.50967 4.51408 4.53764 4.55042 4.60880 4.65299 4.67182 4.72818 4.81254 4.84542 4.86471 4.95035 5.00728 5.04884 5.09632 5.32400 5.38230 5.47409 5.48545 5.50066 5.56648 5.61931 5.73177 5.91532 6.02482 6.58377 6.77639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.348 6.348 3 C 0.031 3.969 4 C 0.433 3.567 5 F -0.185 7.185 6 F -0.189 7.189 7 F -0.174 7.174 8 C -0.135 4.135 9 C -0.090 4.090 10 H 0.125 0.875 11 C 0.077 3.923 12 O -0.353 6.353 13 C 0.467 3.533 14 O -0.529 6.529 15 C -0.083 4.083 16 C -0.073 4.073 17 C -0.046 4.046 18 C -0.050 4.050 19 C -0.109 4.109 20 C -0.120 4.120 21 C -0.082 4.082 22 C -0.079 4.079 23 O -0.556 6.556 24 Si 0.749 3.251 25 C -0.093 4.093 26 C -0.115 4.115 27 C -0.120 4.120 28 C -0.120 4.120 29 C -0.124 4.124 30 C -0.111 4.111 31 C -0.112 4.112 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.142 0.858 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.135 0.865 43 H 0.101 0.899 44 H 0.395 0.605 45 H -0.282 1.282 46 H -0.303 1.303 47 H 0.140 0.860 48 H 0.146 0.854 49 H 0.128 0.872 50 H 0.141 0.859 51 H 0.142 0.858 52 H 0.141 0.859 53 H 0.089 0.911 54 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.618 2.867 -0.141 3.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.266 6.266 3 C -0.012 4.012 4 C 0.379 3.621 5 F -0.167 7.167 6 F -0.171 7.171 7 F -0.156 7.156 8 C -0.172 4.172 9 C -0.108 4.108 10 H 0.143 0.857 11 C 0.003 3.997 12 O -0.270 6.270 13 C 0.311 3.689 14 O -0.418 6.418 15 C -0.119 4.119 16 C -0.074 4.074 17 C -0.046 4.046 18 C -0.050 4.050 19 C -0.127 4.127 20 C -0.138 4.138 21 C -0.082 4.082 22 C -0.189 4.189 23 O -0.367 6.367 24 Si 0.656 3.344 25 C -0.111 4.111 26 C -0.132 4.132 27 C -0.138 4.138 28 C -0.138 4.138 29 C -0.142 4.142 30 C -0.129 4.129 31 C -0.149 4.149 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.125 0.875 35 H 0.147 0.853 36 H 0.122 0.878 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.159 0.841 40 H 0.150 0.850 41 H 0.145 0.855 42 H 0.153 0.847 43 H 0.119 0.881 44 H 0.246 0.754 45 H -0.209 1.209 46 H -0.231 1.231 47 H 0.158 0.842 48 H 0.164 0.836 49 H 0.146 0.854 50 H 0.158 0.842 51 H 0.160 0.840 52 H 0.159 0.841 53 H 0.108 0.892 54 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.921 2.125 -0.517 2.373 hybrid contribution -0.162 0.515 -0.417 0.682 sum 0.759 2.640 -0.934 2.901 Atomic orbital electron populations 1.23249 0.78846 1.04990 1.01888 1.88080 1.22025 1.22727 1.93810 1.24253 1.01290 0.86481 0.89127 1.21512 0.73841 0.78300 0.88454 1.93177 1.37258 1.89275 1.96946 1.93184 1.94251 1.69683 1.59954 1.93171 1.68489 1.57220 1.96711 1.23665 1.00109 1.01470 0.91976 1.22041 0.97792 0.95918 0.95091 0.85709 1.23025 0.84904 0.96339 0.95398 1.86436 1.40912 1.39435 1.60219 1.23875 0.90385 0.78269 0.76417 1.90689 1.32771 1.57957 1.60345 1.20633 0.94518 0.97090 0.99694 1.19388 1.00057 0.94244 0.93664 1.18722 0.99279 0.92237 0.94345 1.18904 0.93926 0.93026 0.99126 1.21244 0.96608 0.96396 0.98478 1.21069 0.98948 0.93599 1.00168 1.19512 0.94319 0.94980 0.99422 1.24903 1.09009 0.96915 0.88035 1.86548 1.72193 1.41192 1.36719 0.94277 0.75430 0.76401 0.88333 1.21127 0.96566 0.96454 0.96917 1.21438 0.99043 0.93127 0.99604 1.21362 1.00165 0.92072 1.00164 1.21398 0.98541 0.97574 0.96319 1.21492 0.98298 0.99629 0.94743 1.21253 0.99720 0.91558 1.00342 1.23355 0.90868 1.05797 0.94915 0.93349 0.91131 0.87528 0.85272 0.87833 0.90728 0.90644 0.84054 0.84998 0.85542 0.84750 0.88120 0.75430 1.20929 1.23090 0.84207 0.83604 0.85415 0.84162 0.83975 0.84093 0.89191 0.85228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 10.44 113.37 1.18 1.17 16 2 O -0.35 -0.57 8.35 -148.98 -1.24 -1.81 16 3 C 0.03 -0.04 0.85 -10.27 -0.01 -0.05 16 4 C 0.43 0.84 2.60 71.98 0.19 1.03 16 5 F -0.19 -0.47 15.39 44.97 0.69 0.22 16 6 F -0.19 -1.22 17.09 44.97 0.77 -0.45 16 7 F -0.17 -0.22 15.82 44.97 0.71 0.49 16 8 C -0.14 0.87 6.50 31.12 0.20 1.08 16 9 C -0.09 0.50 4.21 -10.27 -0.04 0.46 16 10 H 0.12 -1.07 8.14 -2.39 -0.02 -1.09 16 11 C 0.08 -0.04 5.05 71.98 0.36 0.33 16 12 O -0.35 -0.49 10.22 -51.40 -0.53 -1.01 16 13 C 0.47 1.82 7.92 71.24 0.56 2.38 16 14 O -0.53 -5.61 15.79 21.97 0.35 -5.26 16 15 C -0.08 0.11 5.43 29.10 0.16 0.27 16 16 C -0.07 -0.18 4.38 -19.65 -0.09 -0.27 16 17 C -0.05 -0.19 5.40 -20.04 -0.11 -0.30 16 18 C -0.05 -0.18 4.90 -20.04 -0.10 -0.28 16 19 C -0.11 -0.46 9.62 22.48 0.22 -0.25 16 20 C -0.12 -0.34 8.65 22.24 0.19 -0.15 16 21 C -0.08 -0.17 5.39 -19.83 -0.11 -0.27 16 22 C -0.08 0.10 2.79 71.24 0.20 0.30 16 23 O -0.56 -0.80 12.81 -148.98 -1.91 -2.71 16 24 Si 0.75 -1.16 29.84 68.60 2.05 0.89 16 25 C -0.09 -0.10 9.67 22.24 0.21 0.12 16 26 C -0.11 -0.10 7.76 22.48 0.17 0.07 16 27 C -0.12 -0.45 9.62 22.48 0.22 -0.24 16 28 C -0.12 -0.23 10.03 22.23 0.22 -0.01 16 29 C -0.12 -0.15 10.04 22.31 0.22 0.08 16 30 C -0.11 -0.16 9.67 22.24 0.21 0.05 16 31 C -0.11 0.44 6.89 31.12 0.21 0.65 16 32 H 0.05 -0.04 6.51 -2.39 -0.02 -0.06 16 33 H 0.07 -0.37 6.50 -2.39 -0.02 -0.39 16 34 H 0.11 -0.35 8.14 -2.39 -0.02 -0.37 16 35 H 0.13 -1.20 8.07 -2.38 -0.02 -1.22 16 36 H 0.10 -0.81 6.47 -2.39 -0.02 -0.82 16 37 H 0.07 -0.04 8.13 -2.39 -0.02 -0.06 16 38 H 0.08 0.22 6.11 -2.38 -0.01 0.20 16 39 H 0.14 -0.95 8.05 -2.39 -0.02 -0.97 16 40 H 0.13 -0.53 4.69 -2.39 -0.01 -0.54 16 41 H 0.13 0.45 8.06 -2.91 -0.02 0.43 16 42 H 0.14 0.03 4.85 -2.91 -0.01 0.01 16 43 H 0.10 -0.60 7.96 -2.39 -0.02 -0.62 16 44 H 0.40 -2.60 8.74 -74.06 -0.65 -3.24 16 45 H -0.28 -0.57 7.11 99.48 0.71 0.14 16 46 H -0.30 -1.94 7.05 99.48 0.70 -1.24 16 47 H 0.14 -0.26 8.06 -2.91 -0.02 -0.28 16 48 H 0.15 -0.47 7.11 -2.91 -0.02 -0.49 16 49 H 0.13 0.27 8.06 -2.91 -0.02 0.25 16 50 H 0.14 -0.28 8.06 -2.91 -0.02 -0.31 16 51 H 0.14 -0.43 8.06 -2.91 -0.02 -0.45 16 52 H 0.14 -0.37 8.06 -2.91 -0.02 -0.40 16 53 H 0.09 -0.18 8.10 -2.39 -0.02 -0.20 16 54 H 0.13 -0.85 7.00 -2.39 -0.02 -0.87 16 Total: 0.00 -21.59 450.18 5.55 -16.04 By element: Atomic # 1 Polarization: -12.94 SS G_CDS: 0.36 Total: -12.58 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 4.30 Total: 6.17 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -3.33 Total: -10.79 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 2.17 Total: 0.26 kcal Atomic # 14 Polarization: -1.16 SS G_CDS: 2.05 Total: 0.89 kcal Total: -21.59 5.55 -16.04 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13158400_17321610.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.828 kcal (2) G-P(sol) polarization free energy of solvation -21.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds