Wall clock time and date at job start Sat Mar 6 2021 05:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86300 * 109.47411 * 2 1 4 4 C 1.86302 * 109.47001 * 240.00171 * 2 1 3 5 5 C 1.86303 * 109.47422 * 120.00141 * 2 1 3 6 6 O 1.45198 * 109.47046 * 59.99642 * 5 2 1 7 7 C 1.34233 * 116.99914 * 75.00200 * 6 5 2 8 8 O 1.20825 * 120.00060 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99807 * 180.02562 * 7 6 5 10 10 C 1.50705 * 109.46873 * 185.75511 * 9 7 6 11 11 C 1.38004 * 120.05877 * 260.70062 * 10 9 7 12 12 C 1.38344 * 120.11700 * 179.76958 * 11 10 9 13 13 C 1.38295 * 120.24183 * 0.50994 * 12 11 10 14 14 C 1.38042 * 120.12827 * 359.74603 * 13 12 11 15 15 C 1.39318 * 119.86987 * 359.97438 * 14 13 12 16 16 C 1.48396 * 120.11685 * 179.97438 * 15 14 13 17 17 C 1.39331 * 120.11757 * 56.48194 * 16 15 14 18 18 C 1.38024 * 119.87519 * 179.69994 * 17 16 15 19 19 C 1.38322 * 120.11769 * 0.59129 * 18 17 16 20 20 C 1.50704 * 119.87705 * 179.70163 * 19 18 17 21 21 O 1.42906 * 109.47078 * 244.98464 * 20 19 18 22 22 Si 1.86301 * 109.47130 * 4.97917 * 20 19 18 23 23 H 1.48507 * 109.46837 * 60.00203 * 22 20 19 24 24 H 1.48496 * 109.47200 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47587 * 300.00222 * 22 20 19 26 26 C 1.38318 * 120.24951 * 359.68280 * 19 18 17 27 27 C 1.38027 * 120.11576 * 0.02562 * 26 19 18 28 28 H 1.09010 * 109.46745 * 299.99998 * 1 2 3 29 29 H 1.09001 * 109.47232 * 59.99790 * 1 2 3 30 30 H 1.09000 * 109.47566 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47104 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47094 * 300.00294 * 3 2 1 33 33 H 1.08998 * 109.47076 * 59.99922 * 3 2 1 34 34 H 1.09008 * 109.47109 * 300.00177 * 4 2 1 35 35 H 1.09001 * 109.47096 * 59.99956 * 4 2 1 36 36 H 1.08996 * 109.47428 * 180.02562 * 4 2 1 37 37 H 1.08998 * 109.46817 * 299.99926 * 5 2 1 38 38 H 1.08996 * 109.47302 * 179.97438 * 5 2 1 39 39 H 1.09001 * 109.47139 * 305.75446 * 9 7 6 40 40 H 1.08997 * 109.47391 * 65.75968 * 9 7 6 41 41 H 1.07994 * 119.94142 * 0.02562 * 11 10 9 42 42 H 1.07994 * 119.87545 * 180.25807 * 12 11 10 43 43 H 1.08001 * 119.93861 * 179.76688 * 13 12 11 44 44 H 1.07996 * 120.06430 * 179.97438 * 14 13 12 45 45 H 1.08000 * 120.06391 * 359.97438 * 17 16 15 46 46 H 1.08001 * 119.94027 * 180.27675 * 18 17 16 47 47 H 1.08996 * 109.47128 * 124.97723 * 20 19 18 48 48 H 0.96690 * 113.99911 * 59.99786 * 21 20 19 49 49 H 1.07994 * 119.94536 * 179.97438 * 26 19 18 50 50 H 1.08000 * 120.05627 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4841 -0.8783 1.5211 6 8 2.0000 -2.2472 1.5211 7 6 2.5942 -3.1036 0.6754 8 8 3.4888 -2.7220 -0.0415 9 6 2.1447 -4.5409 0.6192 10 6 3.0558 -5.3168 -0.2968 11 6 2.6706 -5.5779 -1.5960 12 6 3.5081 -6.2859 -2.4394 13 6 4.7303 -6.7447 -1.9831 14 6 5.1234 -6.4938 -0.6838 15 6 4.2865 -5.7763 0.1680 16 6 4.7034 -5.5039 1.5659 17 6 5.9036 -4.8440 1.8216 18 6 6.2835 -4.5878 3.1235 19 6 5.4811 -4.9956 4.1738 20 6 5.9044 -4.7189 5.5934 21 8 6.1525 -5.9551 6.2661 22 14 7.4586 -3.6917 5.5890 23 1 7.2009 -2.4070 4.8899 24 1 7.8754 -3.4185 6.9878 25 1 8.5381 -4.4301 4.8855 26 6 4.2913 -5.6561 3.9260 27 6 3.8988 -5.9122 2.6277 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.5740 1.7564 -0.0005 32 1 2.1207 2.2703 -0.8900 33 1 2.1207 2.2703 0.8900 34 1 2.1205 -1.9059 -1.5212 35 1 2.1206 -0.3643 -2.4112 36 1 3.5739 -0.8786 -1.5210 37 1 2.1207 -0.3644 2.4111 38 1 3.5740 -0.8786 1.5209 39 1 2.1818 -4.9726 1.6194 40 1 1.1236 -4.5878 0.2409 41 1 1.7155 -5.2254 -1.9562 42 1 3.2045 -6.4844 -3.4566 43 1 5.3786 -7.3001 -2.6446 44 1 6.0779 -6.8529 -0.3285 45 1 6.5334 -4.5297 1.0024 46 1 7.2115 -4.0724 3.3228 47 1 5.1122 -4.1768 6.1097 48 1 6.8475 -6.4910 5.8603 49 1 3.6688 -5.9727 4.7497 50 1 2.9694 -6.4277 2.4353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_13158400_4858416.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:29:09 Heat of formation + Delta-G solvation = -100.464720 kcal Electronic energy + Delta-G solvation = -30434.144362 eV Core-core repulsion = 26514.991648 eV Total energy + Delta-G solvation = -3919.152713 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 358.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.72361 -40.78880 -39.69856 -37.56981 -37.23233 -34.39860 -33.50617 -32.00568 -30.77256 -29.86087 -29.34822 -28.48503 -28.34041 -27.42684 -26.54701 -24.07946 -23.49919 -22.97028 -21.88362 -21.26964 -18.64424 -18.51783 -17.99515 -17.56355 -17.39045 -16.99521 -16.47748 -16.36365 -16.04545 -15.76045 -15.55979 -15.09838 -14.76684 -14.52999 -14.47829 -14.32628 -14.20251 -14.16313 -13.94816 -13.83122 -13.66828 -13.40730 -13.39522 -13.38281 -13.21734 -13.15880 -13.05408 -12.83424 -12.41192 -12.36057 -12.30334 -12.17049 -12.06159 -11.78611 -11.59483 -11.33688 -10.91340 -10.75344 -10.45912 -10.34308 -10.16157 -9.93914 -9.78683 -9.24440 -0.11203 0.35545 0.38475 0.60133 1.12427 1.30487 1.39966 1.49221 1.57042 1.60013 1.84942 1.88611 2.10141 2.53472 2.61848 2.88219 3.41678 3.49515 3.61630 3.72404 3.81556 3.88171 3.98906 4.08885 4.12917 4.21185 4.24575 4.32367 4.41255 4.48727 4.51775 4.58790 4.64359 4.65290 4.66085 4.68367 4.72194 4.76614 4.84050 4.89888 4.94136 4.95787 5.00297 5.05337 5.32875 5.38985 5.40969 5.47522 5.49253 5.49760 5.52881 5.56848 5.63399 5.75245 5.92324 6.01078 6.51552 6.92810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.445 4.445 2 Si 0.996 3.004 3 C -0.447 4.447 4 C -0.433 4.433 5 C -0.237 4.237 6 O -0.338 6.338 7 C 0.448 3.552 8 O -0.480 6.480 9 C -0.085 4.085 10 C -0.063 4.063 11 C -0.102 4.102 12 C -0.114 4.114 13 C -0.112 4.112 14 C -0.104 4.104 15 C -0.033 4.033 16 C -0.042 4.042 17 C -0.094 4.094 18 C -0.123 4.123 19 C -0.118 4.118 20 C -0.080 4.080 21 O -0.537 6.537 22 Si 0.946 3.054 23 H -0.251 1.251 24 H -0.253 1.253 25 H -0.251 1.251 26 C -0.086 4.086 27 C -0.113 4.113 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.122 0.878 47 H 0.118 0.882 48 H 0.376 0.624 49 H 0.131 0.869 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.366 -0.380 -0.563 1.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.553 4.553 2 Si 1.192 2.808 3 C -0.555 4.555 4 C -0.541 4.541 5 C -0.356 4.356 6 O -0.254 6.254 7 C 0.290 3.710 8 O -0.367 6.367 9 C -0.122 4.122 10 C -0.063 4.063 11 C -0.120 4.120 12 C -0.132 4.132 13 C -0.130 4.130 14 C -0.122 4.122 15 C -0.033 4.033 16 C -0.042 4.042 17 C -0.112 4.112 18 C -0.141 4.141 19 C -0.119 4.119 20 C -0.191 4.191 21 O -0.342 6.342 22 Si 0.769 3.231 23 H -0.174 1.174 24 H -0.177 1.177 25 H -0.175 1.175 26 C -0.104 4.104 27 C -0.131 4.131 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.097 0.903 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.139 0.861 47 H 0.136 0.864 48 H 0.224 0.776 49 H 0.149 0.851 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.790 0.482 -0.334 0.984 hybrid contribution 0.190 -0.314 -0.420 0.558 sum -0.600 0.168 -0.754 0.978 Atomic orbital electron populations 1.26055 1.20026 1.04656 1.04565 0.79742 0.67698 0.67145 0.66221 1.26044 1.06476 1.18142 1.04805 1.26218 1.07026 1.07196 1.13710 1.28298 1.05143 0.84316 1.17863 1.86419 1.59300 1.21082 1.58595 1.23454 0.81025 0.88733 0.77800 1.90680 1.28288 1.77891 1.39825 1.20493 1.00584 0.88242 1.02908 1.19188 0.94105 0.98622 0.94366 1.20952 1.00034 0.98444 0.92525 1.21199 0.94328 0.97924 0.99791 1.21146 0.96632 0.99660 0.95608 1.21174 0.99228 0.98331 0.93456 1.18548 0.93800 0.98474 0.92457 1.18812 0.94871 0.98612 0.91897 1.21137 0.95743 0.97803 0.96526 1.21005 0.99557 1.00647 0.92853 1.20355 0.95988 1.00161 0.95348 1.24967 1.10286 0.92855 0.90954 1.86521 1.60955 1.31916 1.54846 0.85727 0.76803 0.79500 0.81052 1.17424 1.17707 1.17498 1.20946 0.95661 0.97221 0.96564 1.21279 0.99687 1.00156 0.91991 0.91073 0.91003 0.91090 0.91015 0.90684 0.91065 0.91544 0.92025 0.90477 0.87463 0.90325 0.86385 0.86680 0.85680 0.85661 0.85629 0.85699 0.85490 0.86082 0.86402 0.77644 0.85108 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.34 8.65 101.05 0.87 1.21 16 2 Si 1.00 -1.05 12.12 -169.99 -2.06 -3.11 16 3 C -0.45 0.41 8.65 101.05 0.87 1.28 16 4 C -0.43 -0.54 7.10 101.05 0.72 0.18 16 5 C -0.24 -0.06 5.40 101.05 0.55 0.48 16 6 O -0.34 -0.57 9.92 -39.27 -0.39 -0.96 16 7 C 0.45 0.92 6.57 36.01 0.24 1.15 16 8 O -0.48 -1.91 11.72 -18.75 -0.22 -2.13 16 9 C -0.09 0.01 5.42 -29.03 -0.16 -0.15 16 10 C -0.06 -0.07 4.39 -104.29 -0.46 -0.53 16 11 C -0.10 -0.06 9.66 -39.63 -0.38 -0.44 16 12 C -0.11 -0.05 10.04 -39.52 -0.40 -0.45 16 13 C -0.11 -0.06 10.03 -39.63 -0.40 -0.46 16 14 C -0.10 -0.12 9.62 -39.25 -0.38 -0.50 16 15 C -0.03 -0.06 5.40 -104.90 -0.57 -0.62 16 16 C -0.04 -0.06 4.77 -104.90 -0.50 -0.56 16 17 C -0.09 -0.16 9.62 -39.25 -0.38 -0.54 16 18 C -0.12 -0.14 8.65 -39.63 -0.34 -0.48 16 19 C -0.12 -0.08 5.36 -104.56 -0.56 -0.64 16 20 C -0.08 0.02 2.80 36.01 0.10 0.12 16 21 O -0.54 -0.19 12.83 -35.23 -0.45 -0.64 16 22 Si 0.95 -0.14 25.13 -169.99 -4.27 -4.41 16 23 H -0.25 -0.17 7.11 56.52 0.40 0.23 16 24 H -0.25 -0.30 7.11 56.52 0.40 0.10 16 25 H -0.25 0.01 7.04 56.52 0.40 0.41 16 26 C -0.09 -0.05 9.67 -39.63 -0.38 -0.43 16 27 C -0.11 -0.06 7.82 -39.25 -0.31 -0.37 16 28 H 0.07 -0.08 7.96 -51.92 -0.41 -0.49 16 29 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 30 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 31 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 32 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 33 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 34 H 0.07 0.14 6.28 -51.92 -0.33 -0.18 16 35 H 0.06 0.04 7.96 -51.93 -0.41 -0.37 16 36 H 0.08 0.20 7.43 -51.93 -0.39 -0.18 16 37 H 0.11 -0.16 7.96 -51.93 -0.41 -0.57 16 38 H 0.08 0.08 7.52 -51.93 -0.39 -0.31 16 39 H 0.12 -0.12 4.83 -51.93 -0.25 -0.37 16 40 H 0.12 -0.28 8.01 -51.93 -0.42 -0.70 16 41 H 0.13 -0.16 8.04 -52.49 -0.42 -0.58 16 42 H 0.13 -0.17 8.06 -52.49 -0.42 -0.60 16 43 H 0.13 -0.16 8.06 -52.49 -0.42 -0.58 16 44 H 0.13 0.00 8.06 -52.49 -0.42 -0.43 16 45 H 0.13 0.15 8.06 -52.49 -0.42 -0.28 16 46 H 0.12 0.00 4.84 -52.49 -0.25 -0.25 16 47 H 0.12 -0.12 7.96 -51.93 -0.41 -0.53 16 48 H 0.38 -1.02 8.70 45.56 0.40 -0.63 16 49 H 0.13 -0.06 8.06 -52.49 -0.42 -0.49 16 50 H 0.13 -0.14 7.10 -52.49 -0.37 -0.52 16 LS Contribution 407.31 15.07 6.14 6.14 Total: 0.00 -6.37 407.31 -10.17 -16.54 By element: Atomic # 1 Polarization: -2.64 SS G_CDS: -7.06 Total: -9.69 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -1.86 Total: -1.74 kcal Atomic # 8 Polarization: -2.67 SS G_CDS: -1.06 Total: -3.73 kcal Atomic # 14 Polarization: -1.19 SS G_CDS: -6.33 Total: -7.52 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -6.37 -10.17 -16.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13158400_4858416.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.922 kcal (2) G-P(sol) polarization free energy of solvation -6.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds