Wall clock time and date at job start Sat Mar 6 2021 05:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86300 * 109.47411 * 2 1 4 4 C 1.86302 * 109.47001 * 240.00171 * 2 1 3 5 5 C 1.86303 * 109.47422 * 120.00141 * 2 1 3 6 6 O 1.45198 * 109.47046 * 59.99642 * 5 2 1 7 7 C 1.34233 * 116.99914 * 75.00200 * 6 5 2 8 8 O 1.20825 * 120.00060 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99807 * 180.02562 * 7 6 5 10 10 C 1.50705 * 109.46873 * 185.75511 * 9 7 6 11 11 C 1.38004 * 120.05877 * 260.70062 * 10 9 7 12 12 C 1.38344 * 120.11700 * 179.76958 * 11 10 9 13 13 C 1.38295 * 120.24183 * 0.50994 * 12 11 10 14 14 C 1.38042 * 120.12827 * 359.74603 * 13 12 11 15 15 C 1.39318 * 119.86987 * 359.97438 * 14 13 12 16 16 C 1.48396 * 120.11685 * 179.97438 * 15 14 13 17 17 C 1.39331 * 120.11757 * 56.48194 * 16 15 14 18 18 C 1.38024 * 119.87519 * 179.69994 * 17 16 15 19 19 C 1.38322 * 120.11769 * 0.59129 * 18 17 16 20 20 C 1.50704 * 119.87705 * 179.70163 * 19 18 17 21 21 O 1.42906 * 109.47078 * 244.98464 * 20 19 18 22 22 Si 1.86301 * 109.47130 * 4.97917 * 20 19 18 23 23 H 1.48507 * 109.46837 * 60.00203 * 22 20 19 24 24 H 1.48496 * 109.47200 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47587 * 300.00222 * 22 20 19 26 26 C 1.38318 * 120.24951 * 359.68280 * 19 18 17 27 27 C 1.38027 * 120.11576 * 0.02562 * 26 19 18 28 28 H 1.09010 * 109.46745 * 299.99998 * 1 2 3 29 29 H 1.09001 * 109.47232 * 59.99790 * 1 2 3 30 30 H 1.09000 * 109.47566 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47104 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47094 * 300.00294 * 3 2 1 33 33 H 1.08998 * 109.47076 * 59.99922 * 3 2 1 34 34 H 1.09008 * 109.47109 * 300.00177 * 4 2 1 35 35 H 1.09001 * 109.47096 * 59.99956 * 4 2 1 36 36 H 1.08996 * 109.47428 * 180.02562 * 4 2 1 37 37 H 1.08998 * 109.46817 * 299.99926 * 5 2 1 38 38 H 1.08996 * 109.47302 * 179.97438 * 5 2 1 39 39 H 1.09001 * 109.47139 * 305.75446 * 9 7 6 40 40 H 1.08997 * 109.47391 * 65.75968 * 9 7 6 41 41 H 1.07994 * 119.94142 * 0.02562 * 11 10 9 42 42 H 1.07994 * 119.87545 * 180.25807 * 12 11 10 43 43 H 1.08001 * 119.93861 * 179.76688 * 13 12 11 44 44 H 1.07996 * 120.06430 * 179.97438 * 14 13 12 45 45 H 1.08000 * 120.06391 * 359.97438 * 17 16 15 46 46 H 1.08001 * 119.94027 * 180.27675 * 18 17 16 47 47 H 1.08996 * 109.47128 * 124.97723 * 20 19 18 48 48 H 0.96690 * 113.99911 * 59.99786 * 21 20 19 49 49 H 1.07994 * 119.94536 * 179.97438 * 26 19 18 50 50 H 1.08000 * 120.05627 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4841 -0.8783 1.5211 6 8 2.0000 -2.2472 1.5211 7 6 2.5942 -3.1036 0.6754 8 8 3.4888 -2.7220 -0.0415 9 6 2.1447 -4.5409 0.6192 10 6 3.0558 -5.3168 -0.2968 11 6 2.6706 -5.5779 -1.5960 12 6 3.5081 -6.2859 -2.4394 13 6 4.7303 -6.7447 -1.9831 14 6 5.1234 -6.4938 -0.6838 15 6 4.2865 -5.7763 0.1680 16 6 4.7034 -5.5039 1.5659 17 6 5.9036 -4.8440 1.8216 18 6 6.2835 -4.5878 3.1235 19 6 5.4811 -4.9956 4.1738 20 6 5.9044 -4.7189 5.5934 21 8 6.1525 -5.9551 6.2661 22 14 7.4586 -3.6917 5.5890 23 1 7.2009 -2.4070 4.8899 24 1 7.8754 -3.4185 6.9878 25 1 8.5381 -4.4301 4.8855 26 6 4.2913 -5.6561 3.9260 27 6 3.8988 -5.9122 2.6277 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.5740 1.7564 -0.0005 32 1 2.1207 2.2703 -0.8900 33 1 2.1207 2.2703 0.8900 34 1 2.1205 -1.9059 -1.5212 35 1 2.1206 -0.3643 -2.4112 36 1 3.5739 -0.8786 -1.5210 37 1 2.1207 -0.3644 2.4111 38 1 3.5740 -0.8786 1.5209 39 1 2.1818 -4.9726 1.6194 40 1 1.1236 -4.5878 0.2409 41 1 1.7155 -5.2254 -1.9562 42 1 3.2045 -6.4844 -3.4566 43 1 5.3786 -7.3001 -2.6446 44 1 6.0779 -6.8529 -0.3285 45 1 6.5334 -4.5297 1.0024 46 1 7.2115 -4.0724 3.3228 47 1 5.1122 -4.1768 6.1097 48 1 6.8475 -6.4910 5.8603 49 1 3.6688 -5.9727 4.7497 50 1 2.9694 -6.4277 2.4353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13158400_4858416.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:29:08 Heat of formation + Delta-G solvation = -89.863338 kcal Electronic energy + Delta-G solvation = -30433.684651 eV Core-core repulsion = 26514.991648 eV Total energy + Delta-G solvation = -3918.693003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 358.156 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.79671 -40.84924 -39.71284 -37.57100 -37.35602 -34.41647 -33.52656 -32.04307 -30.79019 -29.85531 -29.34172 -28.41932 -28.36618 -27.42657 -26.55488 -24.11852 -23.51900 -23.01020 -21.92804 -21.31344 -18.68462 -18.59067 -18.01424 -17.64040 -17.44363 -17.02459 -16.48638 -16.37439 -16.04739 -15.79132 -15.56794 -15.14243 -14.79354 -14.53866 -14.50663 -14.35739 -14.18799 -14.11939 -13.93095 -13.81383 -13.70113 -13.41418 -13.39441 -13.32989 -13.23096 -13.16043 -13.06507 -12.86268 -12.43027 -12.40763 -12.33666 -12.21211 -12.07250 -11.80000 -11.62163 -11.47097 -10.86605 -10.77033 -10.46519 -10.36721 -10.19453 -9.98970 -9.81176 -9.28265 -0.15255 0.32314 0.33497 0.56487 1.12881 1.22846 1.38279 1.46467 1.58657 1.63816 1.85202 1.89274 2.12492 2.55429 2.57815 2.85327 3.42617 3.53369 3.61639 3.69953 3.85066 3.88340 3.95485 4.06555 4.14851 4.24845 4.26352 4.32044 4.47121 4.48765 4.54852 4.59866 4.64774 4.69223 4.74551 4.74871 4.78160 4.81008 4.82100 4.82762 4.87076 4.93047 4.97389 5.04707 5.29019 5.36083 5.42875 5.43822 5.48339 5.51246 5.55205 5.58481 5.59934 5.64247 5.89108 6.01057 6.66531 6.82529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.055 2.945 3 C -0.454 4.454 4 C -0.450 4.450 5 C -0.256 4.256 6 O -0.341 6.341 7 C 0.445 3.555 8 O -0.506 6.506 9 C -0.086 4.086 10 C -0.071 4.071 11 C -0.111 4.111 12 C -0.123 4.123 13 C -0.121 4.121 14 C -0.118 4.118 15 C -0.047 4.047 16 C -0.048 4.048 17 C -0.109 4.109 18 C -0.132 4.132 19 C -0.121 4.121 20 C -0.074 4.074 21 O -0.549 6.549 22 Si 0.973 3.027 23 H -0.264 1.264 24 H -0.271 1.271 25 H -0.253 1.253 26 C -0.089 4.089 27 C -0.115 4.115 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.126 0.874 38 H 0.066 0.934 39 H 0.128 0.872 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.129 0.871 45 H 0.123 0.877 46 H 0.127 0.873 47 H 0.127 0.873 48 H 0.389 0.611 49 H 0.143 0.857 50 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.665 -0.366 -0.230 2.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.247 2.753 3 C -0.562 4.562 4 C -0.555 4.555 5 C -0.373 4.373 6 O -0.258 6.258 7 C 0.289 3.711 8 O -0.394 6.394 9 C -0.123 4.123 10 C -0.071 4.071 11 C -0.129 4.129 12 C -0.141 4.141 13 C -0.139 4.139 14 C -0.136 4.136 15 C -0.047 4.047 16 C -0.048 4.048 17 C -0.127 4.127 18 C -0.149 4.149 19 C -0.122 4.122 20 C -0.185 4.185 21 O -0.356 6.356 22 Si 0.798 3.202 23 H -0.189 1.189 24 H -0.196 1.196 25 H -0.177 1.177 26 C -0.107 4.107 27 C -0.132 4.132 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.144 0.856 38 H 0.085 0.915 39 H 0.146 0.854 40 H 0.158 0.842 41 H 0.160 0.840 42 H 0.160 0.840 43 H 0.158 0.842 44 H 0.147 0.853 45 H 0.141 0.859 46 H 0.144 0.856 47 H 0.145 0.855 48 H 0.238 0.762 49 H 0.161 0.839 50 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.071 0.467 -0.012 2.123 hybrid contribution 0.638 -0.319 -0.550 0.900 sum -1.434 0.148 -0.562 1.547 Atomic orbital electron populations 1.26101 1.19886 1.04735 1.05144 0.78852 0.67022 0.65937 0.63467 1.26114 1.06286 1.18377 1.05429 1.26475 1.05798 1.07233 1.16027 1.28633 1.04637 0.84085 1.19959 1.86410 1.59268 1.21647 1.58427 1.23881 0.80560 0.89455 0.77242 1.90675 1.29450 1.78455 1.40858 1.20622 1.01576 0.86686 1.03403 1.19363 0.94193 0.98706 0.94885 1.21242 1.00848 0.98325 0.92442 1.21488 0.94273 0.97684 1.00653 1.21396 0.97082 0.99750 0.95634 1.21352 0.99565 0.98721 0.93937 1.18712 0.94303 0.98929 0.92710 1.18906 0.94943 0.98713 0.92257 1.21223 0.96221 0.98524 0.96774 1.21122 1.00013 1.00931 0.92854 1.20475 0.96052 1.00051 0.95598 1.24926 1.10309 0.92727 0.90500 1.86489 1.61658 1.32170 1.55283 0.85350 0.76756 0.78670 0.79399 1.18857 1.19604 1.17701 1.21139 0.95691 0.96937 0.96940 1.21471 1.00109 0.99906 0.91743 0.90263 0.90663 0.91283 0.91454 0.90427 0.90077 0.92571 0.91709 0.92434 0.85595 0.91534 0.85440 0.84177 0.84045 0.84006 0.84153 0.85302 0.85931 0.85558 0.85529 0.76236 0.83902 0.83718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.12 8.65 113.37 0.98 2.10 16 2 Si 1.06 -2.23 12.12 68.60 0.83 -1.40 16 3 C -0.45 1.01 8.65 113.37 0.98 1.99 16 4 C -0.45 -1.68 7.10 113.37 0.81 -0.87 16 5 C -0.26 -0.19 5.40 113.37 0.61 0.42 16 6 O -0.34 -1.19 9.92 -51.45 -0.51 -1.70 16 7 C 0.45 2.10 6.57 71.24 0.47 2.57 16 8 O -0.51 -4.80 11.72 21.97 0.26 -4.54 16 9 C -0.09 0.02 5.42 29.10 0.16 0.18 16 10 C -0.07 -0.19 4.39 -19.65 -0.09 -0.28 16 11 C -0.11 -0.15 9.66 22.24 0.21 0.07 16 12 C -0.12 -0.13 10.04 22.31 0.22 0.10 16 13 C -0.12 -0.20 10.03 22.24 0.22 0.02 16 14 C -0.12 -0.41 9.62 22.48 0.22 -0.20 16 15 C -0.05 -0.20 5.40 -20.04 -0.11 -0.31 16 16 C -0.05 -0.19 4.77 -20.04 -0.10 -0.29 16 17 C -0.11 -0.53 9.62 22.48 0.22 -0.32 16 18 C -0.13 -0.42 8.65 22.24 0.19 -0.23 16 19 C -0.12 -0.20 5.36 -19.82 -0.11 -0.30 16 20 C -0.07 0.04 2.80 71.24 0.20 0.24 16 21 O -0.55 -0.19 12.83 -148.98 -1.91 -2.10 16 22 Si 0.97 0.24 25.13 68.60 1.72 1.97 16 23 H -0.26 -0.62 7.11 99.48 0.71 0.09 16 24 H -0.27 -0.85 7.11 99.48 0.71 -0.14 16 25 H -0.25 -0.09 7.04 99.48 0.70 0.61 16 26 C -0.09 -0.08 9.67 22.24 0.21 0.14 16 27 C -0.11 -0.13 7.82 22.48 0.18 0.05 16 28 H 0.08 -0.30 7.96 -2.38 -0.02 -0.32 16 29 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 30 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 31 H 0.07 -0.07 7.96 -2.39 -0.02 -0.09 16 32 H 0.08 -0.19 7.96 -2.39 -0.02 -0.21 16 33 H 0.08 -0.32 7.96 -2.39 -0.02 -0.34 16 34 H 0.06 0.32 6.28 -2.38 -0.01 0.30 16 35 H 0.06 0.14 7.96 -2.39 -0.02 0.13 16 36 H 0.06 0.43 7.43 -2.39 -0.02 0.41 16 37 H 0.13 -0.45 7.96 -2.39 -0.02 -0.47 16 38 H 0.07 0.22 7.52 -2.39 -0.02 0.20 16 39 H 0.13 -0.31 4.83 -2.39 -0.01 -0.33 16 40 H 0.14 -0.82 8.01 -2.39 -0.02 -0.84 16 41 H 0.14 -0.41 8.04 -2.91 -0.02 -0.43 16 42 H 0.14 -0.44 8.06 -2.91 -0.02 -0.47 16 43 H 0.14 -0.32 8.06 -2.91 -0.02 -0.34 16 44 H 0.13 0.19 8.06 -2.91 -0.02 0.17 16 45 H 0.12 0.58 8.06 -2.91 -0.02 0.55 16 46 H 0.13 0.15 4.84 -2.91 -0.01 0.13 16 47 H 0.13 -0.30 7.96 -2.39 -0.02 -0.32 16 48 H 0.39 -2.20 8.70 -74.06 -0.64 -2.84 16 49 H 0.14 -0.26 8.06 -2.91 -0.02 -0.29 16 50 H 0.15 -0.39 7.10 -2.91 -0.02 -0.42 16 Total: 0.00 -15.24 407.31 6.92 -8.32 By element: Atomic # 1 Polarization: -6.65 SS G_CDS: 1.04 Total: -5.61 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 5.49 Total: 5.06 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -2.16 Total: -8.34 kcal Atomic # 14 Polarization: -1.99 SS G_CDS: 2.56 Total: 0.56 kcal Total: -15.24 6.92 -8.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13158400_4858416.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.546 kcal (2) G-P(sol) polarization free energy of solvation -15.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds