Wall clock time and date at job start Sat Mar 6 2021 02:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36498 * 125.81001 * 2 1 4 4 C 1.47230 * 127.19952 * 359.96428 * 3 2 1 5 5 O 1.21534 * 120.00362 * 359.97438 * 4 3 2 6 6 O 1.34773 * 119.99945 * 179.97438 * 4 3 2 7 7 C 1.45200 * 116.99957 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.46987 * 179.97438 * 7 6 4 9 9 H 1.09002 * 112.85017 * 45.32828 * 8 7 6 10 10 C 1.53786 * 113.61503 * 176.52446 * 8 7 6 11 11 C 1.53783 * 87.08050 * 140.06140 * 10 8 7 12 12 H 1.08998 * 113.60991 * 89.11784 * 11 10 8 13 13 O 1.42897 * 113.61314 * 219.93342 * 11 10 8 14 14 C 1.53781 * 113.61337 * 274.13240 * 8 7 6 15 15 C 1.47058 * 105.59809 * 180.22029 * 3 2 1 16 16 C 1.34162 * 105.94869 * 359.60611 * 15 3 2 17 17 C 1.50700 * 125.42468 * 180.09151 * 16 15 3 18 18 O 1.42897 * 109.47432 * 300.33548 * 17 16 15 19 19 Si 1.86302 * 109.46892 * 180.33245 * 17 16 15 20 20 O 1.33631 * 125.80819 * 179.97438 * 2 1 3 21 21 H 1.09003 * 109.47132 * 89.99391 * 1 2 3 22 22 H 1.08997 * 109.47299 * 209.99229 * 1 2 3 23 23 H 1.09000 * 109.46941 * 329.99585 * 1 2 3 24 24 H 1.08997 * 109.47556 * 59.99953 * 7 6 4 25 25 H 1.09004 * 109.46908 * 299.99235 * 7 6 4 26 26 H 1.08992 * 113.61675 * 254.61398 * 10 8 7 27 27 H 1.09000 * 113.60973 * 25.51686 * 10 8 7 28 28 H 0.96705 * 113.99407 * 180.02562 * 13 11 10 29 29 H 1.08999 * 113.61567 * 334.48261 * 14 8 7 30 30 H 1.08998 * 113.61196 * 105.38615 * 14 8 7 31 31 H 1.08004 * 127.02769 * 179.76929 * 15 3 2 32 32 H 1.09003 * 109.47087 * 60.33588 * 17 16 15 33 33 H 0.96697 * 113.99800 * 180.02562 * 18 17 16 34 34 H 1.48505 * 109.99916 * 60.00242 * 19 17 16 35 35 H 1.48494 * 110.00259 * 181.32006 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3056 1.1069 0.0000 4 6 1.8754 2.5150 -0.0007 5 8 0.6913 2.7886 -0.0019 6 8 2.7947 3.5005 -0.0001 7 6 2.2983 4.8650 -0.0003 8 6 3.4796 5.8374 0.0011 9 1 4.2560 5.5614 -0.7125 10 6 3.0614 7.3149 -0.0844 11 6 4.1760 7.6077 0.9339 12 1 5.1427 7.8156 0.4753 13 8 3.8103 8.5747 1.9204 14 6 4.0183 6.1502 1.4071 15 6 3.6856 0.5989 -0.0054 16 6 3.5859 -0.7390 0.0007 17 6 4.7456 -1.7014 0.0004 18 8 5.5422 -1.4870 -1.1665 19 14 4.1018 -3.4496 0.0002 20 8 2.2888 -1.0837 0.0005 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5137 23 1 -0.3633 0.8900 0.5139 24 1 1.6907 5.0308 0.8893 25 1 1.6919 5.0309 -0.8908 26 1 3.2356 7.7620 -1.0630 27 1 2.0591 7.5077 0.2979 28 1 4.5075 8.7633 2.5635 29 1 3.2771 6.0253 2.1965 30 1 4.9644 5.6577 1.6317 31 1 4.5939 1.1833 -0.0104 32 1 5.3535 -1.5381 0.8903 33 1 6.3081 -2.0735 -1.2329 34 1 3.2713 -3.6849 -1.2082 35 1 5.2353 -4.4083 0.0320 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13308380_11354868.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 02:39:11 Heat of formation + Delta-G solvation = -120.543733 kcal Electronic energy + Delta-G solvation = -20299.043435 eV Core-core repulsion = 16845.842168 eV Total energy + Delta-G solvation = -3453.201267 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 269.107 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.90286 -41.45226 -40.20113 -38.11712 -37.64247 -35.99786 -34.35981 -33.34029 -30.11532 -29.29404 -26.77817 -26.16259 -24.66669 -23.39647 -22.53759 -20.94435 -20.36091 -18.99796 -18.72607 -18.59196 -17.83396 -17.69381 -17.17801 -16.89688 -16.39010 -15.94554 -15.79289 -15.28584 -15.07831 -14.35851 -14.31972 -14.11846 -14.02963 -13.90448 -13.69210 -13.49792 -13.21142 -12.81782 -12.69508 -12.43338 -12.20649 -12.16757 -11.77445 -11.66214 -11.25171 -11.08216 -10.75588 -10.67359 -9.70962 -4.94208 -0.06390 0.66107 1.15739 1.21054 1.54547 1.65853 1.85071 1.94401 3.11810 3.23368 3.39053 3.47591 3.50135 3.57424 3.63650 3.84804 3.91852 4.04999 4.14275 4.18207 4.24779 4.32797 4.46136 4.53686 4.55992 4.61544 4.72004 4.72849 4.76903 4.95402 5.04492 5.08792 5.10499 5.25268 5.37155 5.78998 6.51451 6.57736 6.87070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.109 3.891 3 C -0.265 4.265 4 C 0.542 3.458 5 O -0.531 6.531 6 O -0.350 6.350 7 C 0.078 3.922 8 C -0.105 4.105 9 H 0.115 0.885 10 C -0.123 4.123 11 C 0.077 3.923 12 H 0.103 0.897 13 O -0.582 6.582 14 C -0.162 4.162 15 C -0.135 4.135 16 C -0.022 4.022 17 C -0.041 4.041 18 O -0.555 6.555 19 Si 0.771 3.229 20 O -0.165 6.165 21 H 0.103 0.897 22 H 0.111 0.889 23 H 0.101 0.899 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.396 0.604 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.171 0.829 32 H 0.131 0.869 33 H 0.407 0.593 34 H -0.309 1.309 35 H -0.261 1.261 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.834 -2.219 2.791 5.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.055 3.945 3 C -0.267 4.267 4 C 0.389 3.611 5 O -0.423 6.423 6 O -0.266 6.266 7 C 0.004 3.996 8 C -0.123 4.123 9 H 0.133 0.867 10 C -0.160 4.160 11 C 0.018 3.982 12 H 0.121 0.879 13 O -0.390 6.390 14 C -0.200 4.200 15 C -0.154 4.154 16 C -0.069 4.069 17 C -0.149 4.149 18 O -0.367 6.367 19 Si 0.674 3.326 20 O -0.062 6.062 21 H 0.121 0.879 22 H 0.130 0.870 23 H 0.120 0.880 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.102 0.898 28 H 0.246 0.754 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.189 0.811 32 H 0.148 0.852 33 H 0.260 0.740 34 H -0.237 1.237 35 H -0.186 1.186 Dipole moment (debyes) X Y Z Total from point charges 2.432 -2.708 1.950 4.129 hybrid contribution 1.380 0.533 -0.518 1.567 sum 3.812 -2.175 1.432 4.616 Atomic orbital electron populations 1.20857 0.81485 1.06446 1.05699 1.23340 0.94970 0.82369 0.93791 1.20333 0.95001 0.90496 1.20896 1.20039 0.83486 0.85625 0.71941 1.90820 1.18612 1.84774 1.48091 1.86545 1.39321 1.16911 1.83855 1.23225 0.97203 0.76420 1.02729 1.22354 0.97421 0.92939 0.99591 0.86692 1.23089 0.99732 0.93204 1.00008 1.23435 0.98440 0.86609 0.89713 0.87895 1.86484 1.45853 1.62169 1.44523 1.23792 1.02454 0.97406 0.96335 1.22747 0.96480 0.93449 1.02695 1.21509 0.82340 0.94628 1.08452 1.24047 0.90599 1.08089 0.92161 1.86508 1.43583 1.63383 1.43215 0.93626 0.80723 0.71624 0.86649 1.83685 1.16657 1.34599 1.71268 0.87867 0.87021 0.88020 0.91220 0.90809 0.89014 0.89768 0.75394 0.90176 0.89918 0.81102 0.85198 0.74016 1.23703 1.18642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.04 9.89 71.23 0.70 0.74 16 2 C 0.11 0.53 7.38 25.28 0.19 0.71 16 3 C -0.26 -2.02 6.32 -19.01 -0.12 -2.14 16 4 C 0.54 5.26 7.95 70.19 0.56 5.82 16 5 O -0.53 -6.71 14.64 19.73 0.29 -6.43 16 6 O -0.35 -2.59 10.13 -56.84 -0.58 -3.16 16 7 C 0.08 0.30 5.30 71.98 0.38 0.68 16 8 C -0.10 0.04 4.01 -10.26 -0.04 0.00 16 9 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 10 C -0.12 0.07 7.47 31.12 0.23 0.30 16 11 C 0.08 -0.10 5.22 31.21 0.16 0.06 16 12 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 13 O -0.58 -0.91 13.68 -148.98 -2.04 -2.94 16 14 C -0.16 0.13 7.49 31.21 0.23 0.36 16 15 C -0.13 -0.71 10.91 23.65 0.26 -0.45 16 16 C -0.02 -0.08 6.24 24.76 0.15 0.08 16 17 C -0.04 0.09 2.97 71.24 0.21 0.31 16 18 O -0.55 0.16 12.84 -148.98 -1.91 -1.75 16 19 Si 0.77 -2.13 32.08 68.60 2.20 0.07 16 20 O -0.17 -0.71 8.88 4.67 0.04 -0.67 16 21 H 0.10 -0.19 8.14 -2.39 -0.02 -0.21 16 22 H 0.11 -0.61 8.14 -2.39 -0.02 -0.63 16 23 H 0.10 0.20 6.49 -2.39 -0.02 0.18 16 24 H 0.07 0.33 7.87 -2.39 -0.02 0.31 16 25 H 0.07 0.28 8.14 -2.38 -0.02 0.26 16 26 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.08 0.14 8.10 -2.39 -0.02 0.12 16 28 H 0.40 -2.67 9.12 -74.05 -0.68 -3.34 16 29 H 0.08 0.13 7.92 -2.39 -0.02 0.11 16 30 H 0.08 -0.20 8.14 -2.39 -0.02 -0.21 16 31 H 0.17 0.48 8.06 -2.91 -0.02 0.45 16 32 H 0.13 -1.12 7.96 -2.39 -0.02 -1.14 16 33 H 0.41 -3.90 8.74 -74.06 -0.65 -4.55 16 34 H -0.31 -2.17 7.11 99.48 0.71 -1.46 16 35 H -0.26 0.31 7.11 99.48 0.71 1.01 16 Total: 0.00 -19.33 308.84 0.77 -18.56 By element: Atomic # 1 Polarization: -9.99 SS G_CDS: -0.16 Total: -10.15 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 2.92 Total: 6.47 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -4.20 Total: -14.96 kcal Atomic # 14 Polarization: -2.13 SS G_CDS: 2.20 Total: 0.07 kcal Total: -19.33 0.77 -18.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13308380_11354868.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.982 kcal (2) G-P(sol) polarization free energy of solvation -19.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds