Wall clock time and date at job start Sat Mar 6 2021 05:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36495 * 125.80369 * 2 1 4 4 C 1.47229 * 127.20646 * 0.05499 * 3 2 1 5 5 O 1.21539 * 119.99725 * 359.97438 * 4 3 2 6 6 O 1.34766 * 120.00425 * 179.97438 * 4 3 2 7 7 C 1.45202 * 117.00437 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.47326 * 179.97438 * 7 6 4 9 9 H 1.09004 * 112.85073 * 316.19868 * 8 7 6 10 10 C 1.53780 * 113.61346 * 87.50445 * 8 7 6 11 11 C 1.53783 * 87.08166 * 139.97879 * 10 8 7 12 12 H 1.09004 * 113.68572 * 89.12360 * 11 10 8 13 13 O 1.42896 * 113.61799 * 220.01891 * 11 10 8 14 14 C 1.42896 * 114.00106 * 247.50064 * 13 11 10 15 15 C 1.52999 * 109.47178 * 59.99695 * 14 13 11 16 16 C 1.52998 * 109.47079 * 180.02562 * 14 13 11 17 17 C 1.53001 * 109.47278 * 299.99697 * 14 13 11 18 18 C 1.53775 * 87.08046 * 334.57029 * 11 10 8 19 19 C 1.47066 * 105.59670 * 180.02562 * 3 2 1 20 20 C 1.34160 * 105.94380 * 359.97438 * 19 3 2 21 21 C 1.50707 * 125.42473 * 179.97438 * 20 19 3 22 22 O 1.42904 * 109.46975 * 300.00146 * 21 20 19 23 23 Si 1.86295 * 109.47077 * 179.97438 * 21 20 19 24 24 O 1.33624 * 125.81081 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.46677 * 90.00355 * 1 2 3 26 26 H 1.09001 * 109.47320 * 210.00228 * 1 2 3 27 27 H 1.08999 * 109.47638 * 330.00614 * 1 2 3 28 28 H 1.09001 * 109.46980 * 300.00376 * 7 6 4 29 29 H 1.09001 * 109.46443 * 60.00248 * 7 6 4 30 30 H 1.08995 * 113.61731 * 254.53225 * 10 8 7 31 31 H 1.09003 * 113.61139 * 25.43279 * 10 8 7 32 32 H 1.09001 * 109.47084 * 60.00188 * 15 14 13 33 33 H 1.09004 * 109.47082 * 179.97438 * 15 14 13 34 34 H 1.08995 * 109.47217 * 299.99758 * 15 14 13 35 35 H 1.08999 * 109.47237 * 59.99815 * 16 14 13 36 36 H 1.09004 * 109.47416 * 180.02562 * 16 14 13 37 37 H 1.09001 * 109.47010 * 299.99706 * 16 14 13 38 38 H 1.09007 * 109.47072 * 59.99768 * 17 14 13 39 39 H 1.08993 * 109.47339 * 179.97438 * 17 14 13 40 40 H 1.08999 * 109.47141 * 300.00247 * 17 14 13 41 41 H 1.09008 * 113.61464 * 270.88026 * 18 11 10 42 42 H 1.09003 * 113.69330 * 139.99014 * 18 11 10 43 43 H 1.07991 * 127.02729 * 179.73648 * 19 3 2 44 44 H 1.09002 * 109.46988 * 59.99975 * 21 20 19 45 45 H 0.96694 * 113.99514 * 179.97438 * 22 21 20 46 46 H 1.48501 * 109.99873 * 60.00317 * 23 21 20 47 47 H 1.48499 * 110.00003 * 181.31756 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.1070 0.0000 4 6 1.8753 2.5150 0.0011 5 8 0.6911 2.7886 0.0017 6 8 2.7945 3.5006 0.0015 7 6 2.2981 4.8651 0.0020 8 6 3.4794 5.8375 0.0030 9 1 4.2667 5.5465 0.6984 10 6 3.9945 6.1824 -1.4043 11 6 4.1599 7.6272 -0.9041 12 1 5.1340 7.8272 -0.4575 13 8 3.7770 8.6131 -1.8650 14 6 4.8654 9.3951 -2.3607 15 6 5.8860 8.4778 -3.0372 16 6 4.3415 10.4126 -3.3761 17 6 5.5340 10.1329 -1.1990 18 6 3.0628 7.3127 0.1265 19 6 3.6857 0.5990 -0.0006 20 6 3.5859 -0.7389 -0.0004 21 6 4.7457 -1.7013 -0.0014 22 8 5.5413 -1.4872 -1.1690 23 14 4.1019 -3.4495 0.0003 24 8 2.2889 -1.0836 -0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.6910 5.0312 -0.8879 29 1 1.6911 5.0305 0.8922 30 1 4.9373 5.6966 -1.6554 31 1 3.2405 6.0740 -2.1839 32 1 5.4097 7.9522 -3.8649 33 1 6.7161 9.0744 -3.4157 34 1 6.2593 7.7533 -2.3134 35 1 3.6146 11.0661 -2.8938 36 1 5.1717 11.0089 -3.7546 37 1 3.8649 9.8874 -4.2039 38 1 5.9072 9.4083 -0.4751 39 1 6.3645 10.7290 -1.5770 40 1 4.8069 10.7864 -0.7170 41 1 2.0540 7.5132 -0.2347 42 1 3.2521 7.7389 1.1117 43 1 4.5937 1.1835 -0.0048 44 1 5.3543 -1.5378 0.8880 45 1 6.3076 -2.0731 -1.2355 46 1 3.2702 -3.6855 -1.2071 47 1 5.2355 -4.4081 0.0314 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_13308380_14598394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:14:05 Heat of formation + Delta-G solvation = -124.370031 kcal Electronic energy + Delta-G solvation = -27669.493095 eV Core-core repulsion = 23593.975432 eV Total energy + Delta-G solvation = -4075.517664 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.76163 -41.29227 -40.63454 -38.51703 -38.14277 -37.10488 -34.21301 -33.86444 -33.26657 -30.06700 -29.32355 -28.40117 -28.31523 -26.64855 -26.04063 -24.58808 -23.46608 -22.40158 -20.91243 -20.78131 -20.24723 -18.94266 -18.59841 -17.92470 -17.60383 -17.48878 -17.02117 -16.86653 -16.41673 -16.00337 -15.92686 -15.78369 -15.41063 -14.71119 -14.60282 -14.30632 -14.25009 -14.04474 -13.99869 -13.92789 -13.84605 -13.45674 -13.33593 -13.19333 -13.10818 -13.02838 -12.82136 -12.68138 -12.64355 -12.36843 -12.15872 -12.11202 -11.83107 -11.71434 -11.39059 -11.31118 -11.14846 -10.92001 -10.69624 -10.34190 -9.58981 -5.02921 0.14098 0.79339 1.10705 1.28708 1.61038 1.74809 1.91411 2.10921 2.72031 3.14764 3.40747 3.43269 3.54134 3.67727 3.70793 3.76577 3.86369 3.91482 3.97555 4.07286 4.09944 4.12543 4.17919 4.25796 4.44100 4.48449 4.50796 4.51937 4.55514 4.62677 4.65413 4.74642 4.75025 4.78207 4.79625 4.82742 4.88695 4.91308 5.00136 5.06852 5.09509 5.15602 5.23046 5.28969 5.30697 5.36699 5.52390 5.93056 6.23782 6.41948 6.86930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.108 3.892 3 C -0.240 4.240 4 C 0.544 3.456 5 O -0.510 6.510 6 O -0.347 6.347 7 C 0.082 3.918 8 C -0.111 4.111 9 H 0.105 0.895 10 C -0.149 4.149 11 C 0.062 3.938 12 H 0.093 0.907 13 O -0.361 6.361 14 C 0.105 3.895 15 C -0.176 4.176 16 C -0.139 4.139 17 C -0.179 4.179 18 C -0.126 4.126 19 C -0.123 4.123 20 C -0.016 4.016 21 C -0.036 4.036 22 O -0.533 6.533 23 Si 0.699 3.301 24 O -0.163 6.163 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.111 0.889 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.164 0.836 44 H 0.098 0.902 45 H 0.389 0.611 46 H -0.251 1.251 47 H -0.252 1.252 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.872 -1.020 2.820 4.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.054 3.946 3 C -0.242 4.242 4 C 0.390 3.610 5 O -0.400 6.400 6 O -0.264 6.264 7 C 0.008 3.992 8 C -0.129 4.129 9 H 0.123 0.877 10 C -0.186 4.186 11 C 0.004 3.996 12 H 0.110 0.890 13 O -0.280 6.280 14 C 0.066 3.934 15 C -0.234 4.234 16 C -0.196 4.196 17 C -0.236 4.236 18 C -0.164 4.164 19 C -0.142 4.142 20 C -0.064 4.064 21 C -0.145 4.145 22 O -0.342 6.342 23 Si 0.598 3.402 24 O -0.060 6.060 25 H 0.114 0.886 26 H 0.106 0.894 27 H 0.129 0.871 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.097 0.903 43 H 0.182 0.818 44 H 0.116 0.884 45 H 0.238 0.762 46 H -0.175 1.175 47 H -0.176 1.176 Dipole moment (debyes) X Y Z Total from point charges 1.800 -1.474 2.218 3.214 hybrid contribution 1.438 0.414 -0.540 1.591 sum 3.238 -1.060 1.678 3.798 Atomic orbital electron populations 1.20767 0.82985 1.05761 1.05052 1.22902 0.94032 0.82616 0.95002 1.20180 0.94035 0.90640 1.19358 1.19827 0.83645 0.85105 0.72459 1.90842 1.17893 1.84417 1.46889 1.86547 1.39372 1.16403 1.84075 1.23093 0.96348 0.76765 1.02991 1.22357 0.97957 0.93412 0.99222 0.87676 1.23634 1.02410 0.96023 0.96569 1.23567 0.98233 0.87572 0.90190 0.88962 1.88039 1.32764 1.48813 1.58428 1.21540 0.87224 0.91061 0.93622 1.22470 0.99326 1.00076 1.01512 1.21770 1.01756 0.97884 0.98214 1.22471 1.01454 1.01054 0.98659 1.23231 1.00509 0.93273 0.99378 1.22600 0.96586 0.92962 1.02087 1.20990 0.81949 0.94162 1.09263 1.23784 0.90893 1.08694 0.91127 1.86561 1.42541 1.62421 1.42648 0.94470 0.83531 0.72892 0.89326 1.83658 1.16332 1.34620 1.71376 0.88637 0.89386 0.87093 0.90688 0.90708 0.90885 0.89056 0.91671 0.91541 0.92274 0.91745 0.91070 0.91764 0.92231 0.91360 0.91586 0.88690 0.90306 0.81823 0.88413 0.76173 1.17526 1.17589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.02 9.89 36.01 0.36 0.38 16 2 C 0.11 0.24 7.38 -34.94 -0.26 -0.02 16 3 C -0.24 -0.82 6.32 -103.30 -0.65 -1.47 16 4 C 0.54 2.32 7.95 34.38 0.27 2.59 16 5 O -0.51 -2.87 14.64 -19.30 -0.28 -3.15 16 6 O -0.35 -1.14 10.13 -40.67 -0.41 -1.55 16 7 C 0.08 0.12 5.31 37.16 0.20 0.32 16 8 C -0.11 0.01 4.02 -89.81 -0.36 -0.35 16 9 H 0.11 -0.07 8.14 -51.93 -0.42 -0.49 16 10 C -0.15 -0.06 7.46 -25.92 -0.19 -0.26 16 11 C 0.06 0.02 2.82 -25.92 -0.07 -0.05 16 12 H 0.09 -0.06 5.54 -51.93 -0.29 -0.35 16 13 O -0.36 -0.77 10.00 -35.23 -0.35 -1.12 16 14 C 0.10 0.05 1.11 -90.62 -0.10 -0.05 16 15 C -0.18 0.03 8.39 37.16 0.31 0.34 16 16 C -0.14 -0.01 8.84 37.16 0.33 0.32 16 17 C -0.18 0.08 8.38 37.16 0.31 0.40 16 18 C -0.13 0.04 7.47 -25.92 -0.19 -0.15 16 19 C -0.12 -0.31 10.91 -37.44 -0.41 -0.72 16 20 C -0.02 -0.03 6.24 -35.74 -0.22 -0.25 16 21 C -0.04 0.02 2.96 36.01 0.11 0.13 16 22 O -0.53 -0.17 12.84 -35.23 -0.45 -0.62 16 23 Si 0.70 -0.77 32.09 -169.99 -5.45 -6.23 16 24 O -0.16 -0.35 8.88 7.74 0.07 -0.28 16 25 H 0.10 -0.09 8.14 -51.93 -0.42 -0.51 16 26 H 0.09 -0.21 8.14 -51.93 -0.42 -0.63 16 27 H 0.11 0.06 6.49 -51.93 -0.34 -0.27 16 28 H 0.07 0.14 7.84 -51.93 -0.41 -0.27 16 29 H 0.07 0.09 8.14 -51.93 -0.42 -0.34 16 30 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 31 H 0.09 0.13 7.90 -51.93 -0.41 -0.28 16 32 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 33 H 0.07 -0.06 8.14 -51.93 -0.42 -0.49 16 34 H 0.06 -0.02 7.02 -51.93 -0.36 -0.39 16 35 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 36 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 37 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 38 H 0.06 -0.05 6.24 -51.93 -0.32 -0.38 16 39 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 40 H 0.07 0.00 8.14 -51.93 -0.42 -0.43 16 41 H 0.09 0.02 8.10 -51.92 -0.42 -0.40 16 42 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 43 H 0.16 0.23 8.06 -52.49 -0.42 -0.20 16 44 H 0.10 -0.31 7.96 -51.93 -0.41 -0.72 16 45 H 0.39 -1.63 8.74 45.56 0.40 -1.23 16 46 H -0.25 -0.71 7.11 56.52 0.40 -0.31 16 47 H -0.25 0.00 7.11 56.52 0.40 0.40 16 LS Contribution 387.98 15.07 5.85 5.85 Total: 0.00 -7.04 387.98 -9.30 -16.34 By element: Atomic # 1 Polarization: -2.71 SS G_CDS: -7.68 Total: -10.39 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -0.58 Total: 1.15 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -1.43 Total: -6.72 kcal Atomic # 14 Polarization: -0.77 SS G_CDS: -5.45 Total: -6.23 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -7.04 -9.30 -16.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13308380_14598394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.029 kcal (2) G-P(sol) polarization free energy of solvation -7.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds