Wall clock time and date at job start Sat Mar 6 2021 05:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36495 * 125.80369 * 2 1 4 4 C 1.47229 * 127.20646 * 0.05499 * 3 2 1 5 5 O 1.21539 * 119.99725 * 359.97438 * 4 3 2 6 6 O 1.34766 * 120.00425 * 179.97438 * 4 3 2 7 7 C 1.45202 * 117.00437 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.47326 * 179.97438 * 7 6 4 9 9 H 1.09004 * 112.85073 * 316.19868 * 8 7 6 10 10 C 1.53780 * 113.61346 * 87.50445 * 8 7 6 11 11 C 1.53783 * 87.08166 * 139.97879 * 10 8 7 12 12 H 1.09004 * 113.68572 * 89.12360 * 11 10 8 13 13 O 1.42896 * 113.61799 * 220.01891 * 11 10 8 14 14 C 1.42896 * 114.00106 * 247.50064 * 13 11 10 15 15 C 1.52999 * 109.47178 * 59.99695 * 14 13 11 16 16 C 1.52998 * 109.47079 * 180.02562 * 14 13 11 17 17 C 1.53001 * 109.47278 * 299.99697 * 14 13 11 18 18 C 1.53775 * 87.08046 * 334.57029 * 11 10 8 19 19 C 1.47066 * 105.59670 * 180.02562 * 3 2 1 20 20 C 1.34160 * 105.94380 * 359.97438 * 19 3 2 21 21 C 1.50707 * 125.42473 * 179.97438 * 20 19 3 22 22 O 1.42904 * 109.46975 * 300.00146 * 21 20 19 23 23 Si 1.86295 * 109.47077 * 179.97438 * 21 20 19 24 24 O 1.33624 * 125.81081 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.46677 * 90.00355 * 1 2 3 26 26 H 1.09001 * 109.47320 * 210.00228 * 1 2 3 27 27 H 1.08999 * 109.47638 * 330.00614 * 1 2 3 28 28 H 1.09001 * 109.46980 * 300.00376 * 7 6 4 29 29 H 1.09001 * 109.46443 * 60.00248 * 7 6 4 30 30 H 1.08995 * 113.61731 * 254.53225 * 10 8 7 31 31 H 1.09003 * 113.61139 * 25.43279 * 10 8 7 32 32 H 1.09001 * 109.47084 * 60.00188 * 15 14 13 33 33 H 1.09004 * 109.47082 * 179.97438 * 15 14 13 34 34 H 1.08995 * 109.47217 * 299.99758 * 15 14 13 35 35 H 1.08999 * 109.47237 * 59.99815 * 16 14 13 36 36 H 1.09004 * 109.47416 * 180.02562 * 16 14 13 37 37 H 1.09001 * 109.47010 * 299.99706 * 16 14 13 38 38 H 1.09007 * 109.47072 * 59.99768 * 17 14 13 39 39 H 1.08993 * 109.47339 * 179.97438 * 17 14 13 40 40 H 1.08999 * 109.47141 * 300.00247 * 17 14 13 41 41 H 1.09008 * 113.61464 * 270.88026 * 18 11 10 42 42 H 1.09003 * 113.69330 * 139.99014 * 18 11 10 43 43 H 1.07991 * 127.02729 * 179.73648 * 19 3 2 44 44 H 1.09002 * 109.46988 * 59.99975 * 21 20 19 45 45 H 0.96694 * 113.99514 * 179.97438 * 22 21 20 46 46 H 1.48501 * 109.99873 * 60.00317 * 23 21 20 47 47 H 1.48499 * 110.00003 * 181.31756 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.1070 0.0000 4 6 1.8753 2.5150 0.0011 5 8 0.6911 2.7886 0.0017 6 8 2.7945 3.5006 0.0015 7 6 2.2981 4.8651 0.0020 8 6 3.4794 5.8375 0.0030 9 1 4.2667 5.5465 0.6984 10 6 3.9945 6.1824 -1.4043 11 6 4.1599 7.6272 -0.9041 12 1 5.1340 7.8272 -0.4575 13 8 3.7770 8.6131 -1.8650 14 6 4.8654 9.3951 -2.3607 15 6 5.8860 8.4778 -3.0372 16 6 4.3415 10.4126 -3.3761 17 6 5.5340 10.1329 -1.1990 18 6 3.0628 7.3127 0.1265 19 6 3.6857 0.5990 -0.0006 20 6 3.5859 -0.7389 -0.0004 21 6 4.7457 -1.7013 -0.0014 22 8 5.5413 -1.4872 -1.1690 23 14 4.1019 -3.4495 0.0003 24 8 2.2889 -1.0836 -0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.6910 5.0312 -0.8879 29 1 1.6911 5.0305 0.8922 30 1 4.9373 5.6966 -1.6554 31 1 3.2405 6.0740 -2.1839 32 1 5.4097 7.9522 -3.8649 33 1 6.7161 9.0744 -3.4157 34 1 6.2593 7.7533 -2.3134 35 1 3.6146 11.0661 -2.8938 36 1 5.1717 11.0089 -3.7546 37 1 3.8649 9.8874 -4.2039 38 1 5.9072 9.4083 -0.4751 39 1 6.3645 10.7290 -1.5770 40 1 4.8069 10.7864 -0.7170 41 1 2.0540 7.5132 -0.2347 42 1 3.2521 7.7389 1.1117 43 1 4.5937 1.1835 -0.0048 44 1 5.3543 -1.5378 0.8880 45 1 6.3076 -2.0731 -1.2355 46 1 3.2702 -3.6855 -1.2071 47 1 5.2355 -4.4081 0.0314 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13308380_14598394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:14:04 Heat of formation + Delta-G solvation = -118.952324 kcal Electronic energy + Delta-G solvation = -27669.258166 eV Core-core repulsion = 23593.975432 eV Total energy + Delta-G solvation = -4075.282734 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.170 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.89932 -41.48728 -40.74629 -38.59347 -38.10521 -37.33643 -34.37310 -33.90901 -33.33610 -30.15838 -29.35921 -28.36219 -28.31986 -26.66964 -26.15200 -24.67925 -23.55323 -22.56432 -21.00703 -20.81868 -20.35640 -18.99413 -18.71960 -18.02799 -17.76408 -17.59433 -17.16783 -16.97079 -16.48473 -16.02929 -15.93695 -15.82600 -15.47842 -14.81013 -14.63358 -14.39907 -14.30886 -14.13293 -14.08080 -13.99341 -13.85401 -13.48867 -13.33107 -13.21657 -13.18075 -13.00482 -12.80734 -12.70077 -12.66852 -12.42829 -12.22506 -12.16709 -11.93117 -11.82028 -11.57918 -11.36118 -11.20201 -11.07449 -10.67067 -10.38172 -9.70673 -4.94385 -0.05703 0.66603 1.15742 1.21691 1.55336 1.65977 1.86055 1.94418 2.70821 3.13638 3.37485 3.47797 3.50947 3.57281 3.63016 3.74226 3.82372 3.90586 3.96803 4.05005 4.07278 4.10543 4.18173 4.24942 4.32469 4.46342 4.48263 4.54148 4.56639 4.61596 4.65495 4.70632 4.75037 4.75112 4.77449 4.83299 4.90279 4.92802 4.98544 5.04826 5.10169 5.10522 5.15182 5.25360 5.32051 5.32198 5.38615 5.79441 6.40568 6.51613 6.59056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.108 3.892 3 C -0.264 4.264 4 C 0.542 3.458 5 O -0.531 6.531 6 O -0.350 6.350 7 C 0.079 3.921 8 C -0.102 4.102 9 H 0.116 0.884 10 C -0.150 4.150 11 C 0.062 3.938 12 H 0.105 0.895 13 O -0.382 6.382 14 C 0.097 3.903 15 C -0.174 4.174 16 C -0.140 4.140 17 C -0.176 4.176 18 C -0.123 4.123 19 C -0.134 4.134 20 C -0.022 4.022 21 C -0.041 4.041 22 O -0.555 6.555 23 Si 0.771 3.229 24 O -0.165 6.165 25 H 0.102 0.898 26 H 0.111 0.889 27 H 0.102 0.898 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.171 0.829 44 H 0.131 0.869 45 H 0.407 0.593 46 H -0.310 1.310 47 H -0.261 1.261 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.038 -1.252 3.725 5.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.055 3.945 3 C -0.267 4.267 4 C 0.389 3.611 5 O -0.423 6.423 6 O -0.267 6.267 7 C 0.006 3.994 8 C -0.120 4.120 9 H 0.134 0.866 10 C -0.188 4.188 11 C 0.004 3.996 12 H 0.123 0.877 13 O -0.302 6.302 14 C 0.059 3.941 15 C -0.231 4.231 16 C -0.197 4.197 17 C -0.234 4.234 18 C -0.161 4.161 19 C -0.153 4.153 20 C -0.070 4.070 21 C -0.149 4.149 22 O -0.367 6.367 23 Si 0.674 3.326 24 O -0.062 6.062 25 H 0.120 0.880 26 H 0.130 0.870 27 H 0.120 0.880 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.189 0.811 44 H 0.148 0.852 45 H 0.260 0.740 46 H -0.238 1.238 47 H -0.186 1.186 Dipole moment (debyes) X Y Z Total from point charges 3.001 -1.702 3.144 4.667 hybrid contribution 1.066 0.468 -0.897 1.470 sum 4.067 -1.233 2.246 4.807 Atomic orbital electron populations 1.20857 0.81494 1.06480 1.05649 1.23335 0.94965 0.82374 0.93836 1.20336 0.94985 0.90517 1.20841 1.20032 0.83490 0.85623 0.71943 1.90820 1.18606 1.84783 1.48104 1.86545 1.39328 1.16949 1.83829 1.23217 0.97141 0.76331 1.02749 1.22329 0.97518 0.93066 0.99089 0.86551 1.23609 1.02135 0.96553 0.96499 1.23655 0.98937 0.86966 0.90005 0.87716 1.88017 1.33918 1.49338 1.58959 1.21688 0.87123 0.91192 0.94124 1.22446 0.99370 1.00110 1.01207 1.21798 1.02144 0.97858 0.97903 1.22446 1.01506 1.01082 0.98328 1.23213 0.99959 0.92954 0.99932 1.22741 0.96477 0.93434 1.02684 1.21505 0.82339 0.94638 1.08470 1.24050 0.90615 1.08091 0.92143 1.86512 1.43586 1.63438 1.43162 0.93632 0.80672 0.71619 0.86636 1.83682 1.16657 1.34607 1.71278 0.87970 0.86997 0.87967 0.91523 0.90411 0.90571 0.90489 0.92660 0.90503 0.91970 0.92240 0.89675 0.92583 0.91682 0.90384 0.92120 0.89532 0.88904 0.81133 0.85179 0.74025 1.23766 1.18647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.02 9.89 71.24 0.70 0.72 16 2 C 0.11 0.55 7.38 25.28 0.19 0.74 16 3 C -0.26 -2.08 6.32 -19.00 -0.12 -2.20 16 4 C 0.54 5.38 7.95 70.19 0.56 5.94 16 5 O -0.53 -6.82 14.64 19.71 0.29 -6.53 16 6 O -0.35 -2.68 10.13 -56.77 -0.58 -3.26 16 7 C 0.08 0.32 5.31 71.98 0.38 0.70 16 8 C -0.10 -0.01 4.02 -10.27 -0.04 -0.05 16 9 H 0.12 -0.22 8.14 -2.39 -0.02 -0.24 16 10 C -0.15 -0.23 7.46 31.12 0.23 0.00 16 11 C 0.06 0.04 2.82 31.12 0.09 0.13 16 12 H 0.11 -0.21 5.54 -2.38 -0.01 -0.23 16 13 O -0.38 -1.85 10.00 -148.98 -1.49 -3.34 16 14 C 0.10 0.11 1.11 -10.79 -0.01 0.10 16 15 C -0.17 0.07 8.39 71.98 0.60 0.67 16 16 C -0.14 -0.07 8.84 71.98 0.64 0.56 16 17 C -0.18 0.27 8.38 71.98 0.60 0.87 16 18 C -0.12 0.06 7.47 31.12 0.23 0.30 16 19 C -0.13 -0.74 10.91 23.66 0.26 -0.48 16 20 C -0.02 -0.08 6.24 24.76 0.15 0.07 16 21 C -0.04 0.09 2.96 71.24 0.21 0.30 16 22 O -0.55 0.00 12.84 -148.98 -1.91 -1.91 16 23 Si 0.77 -1.98 32.09 68.60 2.20 0.22 16 24 O -0.17 -0.75 8.88 4.77 0.04 -0.71 16 25 H 0.10 -0.15 8.14 -2.39 -0.02 -0.17 16 26 H 0.11 -0.59 8.14 -2.39 -0.02 -0.61 16 27 H 0.10 0.21 6.49 -2.39 -0.02 0.19 16 28 H 0.07 0.37 7.84 -2.39 -0.02 0.35 16 29 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.08 0.05 8.14 -2.39 -0.02 0.04 16 31 H 0.08 0.34 7.90 -2.39 -0.02 0.32 16 32 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.08 -0.20 8.14 -2.38 -0.02 -0.22 16 34 H 0.06 -0.07 7.02 -2.39 -0.02 -0.08 16 35 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 36 H 0.08 -0.22 8.14 -2.38 -0.02 -0.24 16 37 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.06 -0.17 6.24 -2.38 -0.01 -0.19 16 39 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 40 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.09 0.12 8.10 -2.38 -0.02 0.10 16 42 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 43 H 0.17 0.53 8.06 -2.92 -0.02 0.51 16 44 H 0.13 -1.10 7.96 -2.39 -0.02 -1.12 16 45 H 0.41 -3.80 8.74 -74.06 -0.65 -4.45 16 46 H -0.31 -2.26 7.11 99.48 0.71 -1.55 16 47 H -0.26 0.26 7.11 99.48 0.71 0.97 16 Total: 0.00 -17.54 387.98 3.59 -13.95 By element: Atomic # 1 Polarization: -7.17 SS G_CDS: 0.35 Total: -6.81 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 4.68 Total: 8.38 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -3.65 Total: -15.75 kcal Atomic # 14 Polarization: -1.98 SS G_CDS: 2.20 Total: 0.22 kcal Total: -17.54 3.59 -13.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13308380_14598394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.998 kcal (2) G-P(sol) polarization free energy of solvation -17.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds