Wall clock time and date at job start Sat Mar 6 2021 05:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36503 * 125.80583 * 2 1 4 4 C 1.47227 * 127.20043 * 359.97056 * 3 2 1 5 5 O 1.21536 * 120.00429 * 0.02562 * 4 3 2 6 6 O 1.34783 * 119.99860 * 180.02562 * 4 3 2 7 7 C 1.45194 * 116.99724 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.46676 * 180.02562 * 7 6 4 9 9 H 1.09003 * 112.85101 * 43.80444 * 8 7 6 10 10 C 1.53785 * 113.61461 * 174.99891 * 8 7 6 11 11 C 1.53781 * 87.08169 * 139.97770 * 10 8 7 12 12 H 1.08999 * 113.61559 * 220.01529 * 11 10 8 13 13 N 1.46504 * 113.61225 * 89.20286 * 11 10 8 14 14 C 1.34771 * 120.00010 * 155.00225 * 13 11 10 15 15 O 1.21508 * 120.00279 * 359.97438 * 14 13 11 16 16 O 1.34637 * 119.99812 * 179.97438 * 14 13 11 17 17 C 1.45207 * 117.00094 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47026 * 59.99860 * 17 16 14 19 19 C 1.52993 * 109.47304 * 180.02562 * 17 16 14 20 20 C 1.53004 * 109.46853 * 300.00034 * 17 16 14 21 21 C 1.53775 * 87.08262 * 334.56895 * 11 10 8 22 22 C 1.47062 * 105.59768 * 179.97438 * 3 2 1 23 23 C 1.34158 * 105.94412 * 359.97438 * 22 3 2 24 24 C 1.50707 * 125.42528 * 179.97438 * 23 22 3 25 25 O 1.42903 * 109.46442 * 65.00411 * 24 23 22 26 26 Si 1.86293 * 109.47256 * 184.99978 * 24 23 22 27 27 O 1.33616 * 125.80871 * 180.25594 * 2 1 3 28 28 H 1.08995 * 109.47161 * 90.00253 * 1 2 3 29 29 H 1.08998 * 109.47348 * 210.00639 * 1 2 3 30 30 H 1.09005 * 109.47274 * 330.00426 * 1 2 3 31 31 H 1.08999 * 109.47081 * 299.99936 * 7 6 4 32 32 H 1.08996 * 109.47486 * 60.00232 * 7 6 4 33 33 H 1.09000 * 113.61320 * 254.52825 * 10 8 7 34 34 H 1.09001 * 113.61392 * 25.43073 * 10 8 7 35 35 H 0.97001 * 120.00040 * 334.99921 * 13 11 10 36 36 H 1.08996 * 109.46882 * 60.00315 * 18 17 16 37 37 H 1.08993 * 109.46858 * 180.02562 * 18 17 16 38 38 H 1.08999 * 109.46899 * 300.00586 * 18 17 16 39 39 H 1.08996 * 109.47884 * 59.99752 * 19 17 16 40 40 H 1.08998 * 109.47239 * 180.02562 * 19 17 16 41 41 H 1.09006 * 109.46856 * 299.99886 * 19 17 16 42 42 H 1.09004 * 109.47011 * 60.00182 * 20 17 16 43 43 H 1.09002 * 109.47205 * 179.97438 * 20 17 16 44 44 H 1.08999 * 109.47613 * 300.00102 * 20 17 16 45 45 H 1.09002 * 113.61613 * 270.88050 * 21 11 10 46 46 H 1.09002 * 113.61955 * 139.97923 * 21 11 10 47 47 H 1.07997 * 127.02486 * 179.97438 * 22 3 2 48 48 H 1.08999 * 109.47345 * 305.00481 * 24 23 22 49 49 H 0.96700 * 114.00311 * 60.00230 * 25 24 23 50 50 H 1.48501 * 109.99918 * 58.68485 * 26 24 23 51 51 H 1.48506 * 109.99973 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3056 1.1070 0.0000 4 6 1.8753 2.5150 -0.0006 5 8 0.6912 2.7886 -0.0007 6 8 2.7947 3.5007 -0.0010 7 6 2.2982 4.8651 -0.0010 8 6 3.4794 5.8375 -0.0022 9 1 4.2665 5.5466 -0.6980 10 6 3.0628 7.3127 -0.1251 11 6 4.1603 7.6269 0.9052 12 1 3.8686 8.3788 1.6384 13 7 5.4693 7.8960 0.3046 14 6 6.3708 8.6504 0.9637 15 8 6.0979 9.1078 2.0558 16 8 7.5739 8.8972 0.4120 17 6 8.4947 9.7178 1.1783 18 6 8.7881 9.0399 2.5182 19 6 9.7984 9.8879 0.3959 20 6 7.8675 11.0908 1.4279 21 6 3.9951 6.1821 1.4050 22 6 3.6857 0.5991 0.0006 23 6 3.5860 -0.7388 0.0015 24 6 4.7457 -1.7013 0.0019 25 8 5.4760 -1.5665 1.2228 26 14 4.1061 -3.4444 -0.1499 27 8 2.2888 -1.0836 -0.0048 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8901 0.5138 31 1 1.6908 5.0307 -0.8908 32 1 1.6914 5.0310 0.8891 33 1 3.2532 7.7396 -1.1099 34 1 2.0542 7.5132 0.2364 35 1 5.6871 7.5311 -0.5674 36 1 9.2350 8.0618 2.3402 37 1 9.4789 9.6561 3.0935 38 1 7.8591 8.9190 3.0753 39 1 9.5892 10.3711 -0.5585 40 1 10.4898 10.5036 0.9713 41 1 10.2455 8.9099 0.2177 42 1 6.9385 10.9700 1.9852 43 1 8.5584 11.7068 2.0035 44 1 7.6583 11.5738 0.4734 45 1 3.2414 6.0734 2.1850 46 1 4.9380 5.6961 1.6556 47 1 4.5938 1.1836 0.0004 48 1 5.4016 -1.4802 -0.8402 49 1 4.9536 -1.7489 2.0158 50 1 3.3178 -3.5891 -1.4001 51 1 5.2401 -4.4033 -0.1501 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13308380_15734084.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:48:50 Heat of formation + Delta-G solvation = -152.826058 kcal Electronic energy + Delta-G solvation = -33203.265049 eV Core-core repulsion = 28458.641577 eV Total energy + Delta-G solvation = -4744.623472 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.181 amu Computer time = 2.63 seconds Orbital eigenvalues (eV) -43.89078 -42.00110 -41.37763 -40.32076 -38.09551 -37.99993 -37.41150 -35.39091 -34.38219 -34.07924 -33.22676 -30.07938 -29.26636 -28.39204 -28.32618 -26.78956 -26.24410 -24.95328 -24.21699 -23.15558 -22.57767 -21.19416 -20.85465 -20.20140 -19.36340 -19.05679 -18.42326 -17.96578 -17.66537 -17.42464 -17.37388 -17.19810 -16.79709 -16.58252 -15.95497 -15.84622 -15.67883 -15.45559 -15.24817 -15.11284 -14.61332 -14.47517 -14.29281 -14.27190 -14.06413 -13.88724 -13.66480 -13.62017 -13.38846 -13.29934 -13.07777 -12.97221 -12.94417 -12.89421 -12.80217 -12.54766 -12.36082 -12.26749 -12.11207 -11.92159 -11.85289 -11.54270 -11.42367 -11.23519 -11.15208 -11.05411 -10.63894 -10.22998 -9.73195 -5.00326 -0.03638 0.69269 1.09416 1.15187 1.26723 1.60587 1.69154 1.74363 1.87105 1.91169 3.07255 3.15098 3.34456 3.39315 3.44510 3.57252 3.65633 3.71465 3.72511 3.77965 3.88067 3.91877 4.04370 4.17618 4.27443 4.32218 4.36963 4.44143 4.47300 4.55494 4.57155 4.58708 4.59067 4.69196 4.69895 4.72308 4.74097 4.80136 4.85271 4.86421 4.94302 4.99104 5.02708 5.07397 5.10329 5.14154 5.24777 5.28242 5.32876 5.44742 5.58071 5.79066 6.33980 6.61166 6.62028 7.29391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.109 3.891 3 C -0.265 4.265 4 C 0.541 3.459 5 O -0.530 6.530 6 O -0.353 6.353 7 C 0.074 3.926 8 C -0.104 4.104 9 H 0.107 0.893 10 C -0.119 4.119 11 C 0.132 3.868 12 H 0.098 0.902 13 N -0.684 5.684 14 C 0.646 3.354 15 O -0.592 6.592 16 O -0.370 6.370 17 C 0.127 3.873 18 C -0.180 4.180 19 C -0.138 4.138 20 C -0.180 4.180 21 C -0.146 4.146 22 C -0.137 4.137 23 C -0.059 4.059 24 C -0.028 4.028 25 O -0.541 6.541 26 Si 0.784 3.216 27 O -0.162 6.162 28 H 0.104 0.896 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.417 0.583 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.101 0.899 46 H 0.064 0.936 47 H 0.168 0.832 48 H 0.138 0.862 49 H 0.400 0.600 50 H -0.292 1.292 51 H -0.279 1.279 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.371 -1.823 -0.832 2.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.056 3.944 3 C -0.268 4.268 4 C 0.389 3.611 5 O -0.422 6.422 6 O -0.269 6.269 7 C 0.001 3.999 8 C -0.122 4.122 9 H 0.125 0.875 10 C -0.157 4.157 11 C 0.028 3.972 12 H 0.116 0.884 13 N -0.343 5.343 14 C 0.400 3.600 15 O -0.483 6.483 16 O -0.284 6.284 17 C 0.091 3.909 18 C -0.238 4.238 19 C -0.195 4.195 20 C -0.237 4.237 21 C -0.185 4.185 22 C -0.156 4.156 23 C -0.107 4.107 24 C -0.138 4.138 25 O -0.350 6.350 26 Si 0.688 3.312 27 O -0.059 6.059 28 H 0.122 0.878 29 H 0.129 0.871 30 H 0.119 0.881 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.135 0.865 35 H 0.254 0.746 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.117 0.883 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.106 0.894 44 H 0.081 0.919 45 H 0.119 0.881 46 H 0.083 0.917 47 H 0.185 0.815 48 H 0.155 0.845 49 H 0.251 0.749 50 H -0.218 1.218 51 H -0.206 1.206 Dipole moment (debyes) X Y Z Total from point charges -0.344 -2.296 -1.156 2.594 hybrid contribution 0.319 0.779 -0.561 1.012 sum -0.024 -1.517 -1.717 2.292 Atomic orbital electron populations 1.20852 0.81597 1.06368 1.05724 1.23335 0.94962 0.82478 0.93650 1.20359 0.94883 0.90655 1.20880 1.20023 0.83495 0.85632 0.71974 1.90822 1.18545 1.84770 1.48065 1.86561 1.39388 1.17153 1.83832 1.23315 0.97175 0.76163 1.03234 1.22665 0.97281 0.93585 0.98680 0.87457 1.23332 0.99245 0.92693 1.00409 1.21811 0.80892 0.97544 0.96970 0.88403 1.44366 1.13838 1.53024 1.23088 1.18305 0.80640 0.78442 0.82630 1.90906 1.79680 1.55985 1.21705 1.86312 1.24075 1.67738 1.50290 1.22365 0.87939 0.89197 0.91399 1.22474 1.03355 1.01373 0.96549 1.21893 0.93067 1.03649 1.00879 1.22476 1.02845 0.95498 1.02896 1.23571 1.02234 0.95541 0.97108 1.22763 0.96485 0.93577 1.02751 1.22931 0.82932 0.95727 1.09115 1.24585 0.90152 1.07530 0.91484 1.86542 1.39598 1.93196 1.15629 0.93223 0.79795 0.72212 0.86011 1.83704 1.16660 1.34429 1.71096 0.87799 0.87137 0.88106 0.90405 0.90498 0.88633 0.86492 0.74623 0.92024 0.89403 0.91790 0.91121 0.88263 0.91245 0.91761 0.89428 0.91867 0.88102 0.91699 0.81482 0.84493 0.74897 1.21848 1.20563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.24 9.89 71.24 0.70 0.94 16 2 C 0.11 0.24 7.38 25.28 0.19 0.42 16 3 C -0.27 -1.36 6.32 -19.00 -0.12 -1.48 16 4 C 0.54 3.84 7.95 70.18 0.56 4.40 16 5 O -0.53 -5.21 14.64 19.72 0.29 -4.92 16 6 O -0.35 -1.68 10.13 -56.94 -0.58 -2.26 16 7 C 0.07 -0.02 5.31 71.98 0.38 0.36 16 8 C -0.10 0.40 3.90 -10.26 -0.04 0.36 16 9 H 0.11 -0.45 8.14 -2.39 -0.02 -0.47 16 10 C -0.12 0.75 7.39 31.12 0.23 0.98 16 11 C 0.13 -0.17 4.32 45.51 0.20 0.03 16 12 H 0.10 0.19 7.46 -2.39 -0.02 0.17 16 13 N -0.68 -0.38 5.27 -567.62 -2.99 -3.37 16 14 C 0.65 4.51 8.06 129.79 1.05 5.56 16 15 O -0.59 -7.29 11.48 19.81 0.23 -7.06 16 16 O -0.37 -2.16 9.94 -55.47 -0.55 -2.71 16 17 C 0.13 0.42 1.13 -10.79 -0.01 0.41 16 18 C -0.18 -0.68 8.37 71.98 0.60 -0.07 16 19 C -0.14 0.24 8.85 71.98 0.64 0.88 16 20 C -0.18 -0.61 8.37 71.98 0.60 -0.01 16 21 C -0.15 0.22 7.43 31.12 0.23 0.45 16 22 C -0.14 -0.42 10.93 23.66 0.26 -0.16 16 23 C -0.06 -0.04 6.18 24.76 0.15 0.11 16 24 C -0.03 0.07 2.97 71.24 0.21 0.28 16 25 O -0.54 1.23 12.88 -148.98 -1.92 -0.69 16 26 Si 0.78 -2.45 32.09 68.60 2.20 -0.25 16 27 O -0.16 -0.17 8.89 4.72 0.04 -0.13 16 28 H 0.10 -0.44 8.14 -2.39 -0.02 -0.46 16 29 H 0.11 -0.82 8.14 -2.39 -0.02 -0.84 16 30 H 0.10 -0.01 6.49 -2.38 -0.02 -0.02 16 31 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.08 -0.03 7.84 -2.39 -0.02 -0.05 16 33 H 0.10 -0.76 8.14 -2.39 -0.02 -0.78 16 34 H 0.12 -0.97 8.10 -2.39 -0.02 -0.99 16 35 H 0.42 -1.58 8.81 -92.71 -0.82 -2.40 16 36 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.06 0.58 5.88 -2.39 -0.01 0.57 16 39 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 40 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 41 H 0.07 -0.13 8.14 -2.38 -0.02 -0.15 16 42 H 0.06 0.56 5.88 -2.39 -0.01 0.54 16 43 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 44 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 45 H 0.10 -0.23 7.90 -2.39 -0.02 -0.25 16 46 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 47 H 0.17 0.27 8.06 -2.91 -0.02 0.25 16 48 H 0.14 -0.44 7.96 -2.39 -0.02 -0.46 16 49 H 0.40 -4.01 8.70 -74.06 -0.64 -4.66 16 50 H -0.29 -0.99 7.11 99.48 0.71 -0.28 16 51 H -0.28 -0.68 7.11 99.48 0.71 0.03 16 Total: 0.00 -20.65 423.22 2.09 -18.57 By element: Atomic # 1 Polarization: -10.17 SS G_CDS: -0.46 Total: -10.63 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 5.83 Total: 13.46 kcal Atomic # 7 Polarization: -0.38 SS G_CDS: -2.99 Total: -3.37 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -2.49 Total: -17.77 kcal Atomic # 14 Polarization: -2.45 SS G_CDS: 2.20 Total: -0.25 kcal Total: -20.65 2.09 -18.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13308380_15734084.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.261 kcal (2) G-P(sol) polarization free energy of solvation -20.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds