Wall clock time and date at job start Sat Mar 6 2021 05:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.36496 * 125.81393 * 2 1 4 4 C 1.47229 * 127.19886 * 359.95746 * 3 2 1 5 5 O 1.21535 * 119.99961 * 359.97438 * 4 3 2 6 6 O 1.34775 * 120.00010 * 180.02562 * 4 3 2 7 7 C 1.45200 * 117.00151 * 179.97438 * 6 4 3 8 8 C 1.52990 * 109.47114 * 179.97438 * 7 6 4 9 9 H 1.09000 * 112.90908 * 43.75454 * 8 7 6 10 10 C 1.53786 * 113.61464 * 175.00082 * 8 7 6 11 11 C 1.53781 * 87.17350 * 140.02626 * 10 8 7 12 12 H 1.08999 * 113.61567 * 89.07405 * 11 10 8 13 13 N 1.46500 * 113.61760 * 219.89426 * 11 10 8 14 14 C 1.34768 * 120.00289 * 205.00346 * 13 11 10 15 15 O 1.21507 * 120.00309 * 359.97438 * 14 13 11 16 16 O 1.34640 * 119.99863 * 179.97438 * 14 13 11 17 17 C 1.45205 * 116.99925 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.46584 * 60.00094 * 17 16 14 19 19 C 1.52994 * 109.47219 * 179.97438 * 17 16 14 20 20 C 1.52999 * 109.47307 * 300.00426 * 17 16 14 21 21 C 1.53781 * 87.08070 * 334.52830 * 11 10 8 22 22 C 1.47058 * 105.60023 * 180.21828 * 3 2 1 23 23 C 1.34167 * 105.94720 * 359.60312 * 22 3 2 24 24 C 1.50697 * 125.42616 * 180.09489 * 23 22 3 25 25 O 1.42903 * 109.47101 * 300.32976 * 24 23 22 26 26 Si 1.86302 * 109.46966 * 180.33173 * 24 23 22 27 27 O 1.33639 * 125.80386 * 179.97438 * 2 1 3 28 28 H 1.09008 * 109.47232 * 89.99785 * 1 2 3 29 29 H 1.08992 * 109.47903 * 210.00348 * 1 2 3 30 30 H 1.09007 * 109.47215 * 330.00656 * 1 2 3 31 31 H 1.09007 * 109.46549 * 60.00016 * 7 6 4 32 32 H 1.08994 * 109.47109 * 300.00291 * 7 6 4 33 33 H 1.09002 * 113.61357 * 25.43543 * 10 8 7 34 34 H 1.09002 * 113.61608 * 254.61705 * 10 8 7 35 35 H 0.97000 * 119.99380 * 24.99478 * 13 11 10 36 36 H 1.08999 * 109.47480 * 60.00451 * 18 17 16 37 37 H 1.09005 * 109.47119 * 179.97438 * 18 17 16 38 38 H 1.09003 * 109.47665 * 299.99724 * 18 17 16 39 39 H 1.08999 * 109.47120 * 60.00287 * 19 17 16 40 40 H 1.08999 * 109.47047 * 179.97438 * 19 17 16 41 41 H 1.08997 * 109.47066 * 300.00300 * 19 17 16 42 42 H 1.08996 * 109.47102 * 59.99718 * 20 17 16 43 43 H 1.08997 * 109.46969 * 179.97438 * 20 17 16 44 44 H 1.08999 * 109.46822 * 299.99584 * 20 17 16 45 45 H 1.09005 * 113.61471 * 139.98321 * 21 11 10 46 46 H 1.08996 * 113.61178 * 270.79663 * 21 11 10 47 47 H 1.07997 * 127.03045 * 179.75985 * 22 3 2 48 48 H 1.08998 * 109.47478 * 60.33179 * 24 23 22 49 49 H 0.96702 * 113.99663 * 179.97438 * 25 24 23 50 50 H 1.48498 * 109.99917 * 298.67890 * 26 24 23 51 51 H 1.48494 * 109.99966 * 60.00179 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3056 1.1069 0.0000 4 6 1.8755 2.5149 -0.0009 5 8 0.6914 2.7886 -0.0022 6 8 2.7949 3.5004 -0.0013 7 6 2.2986 4.8650 -0.0027 8 6 3.4798 5.8372 -0.0023 9 1 4.2690 5.5464 -0.6957 10 6 3.0635 7.3124 -0.1265 11 6 4.1597 7.6295 0.9044 12 1 5.1343 7.8278 0.4584 13 7 3.7665 8.6433 1.8861 14 6 4.7080 9.3817 2.5063 15 8 5.8831 9.2063 2.2516 16 8 4.3465 10.3138 3.4082 17 6 5.4138 11.0712 4.0373 18 6 6.2066 11.8218 2.9655 19 6 4.8138 12.0750 5.0238 20 6 6.3454 10.1151 4.7849 21 6 3.9946 6.1857 1.4072 22 6 3.6856 0.5988 -0.0054 23 6 3.5859 -0.7392 0.0009 24 6 4.7455 -1.7016 0.0007 25 8 5.5420 -1.4874 -1.1663 26 14 4.1015 -3.4498 0.0006 27 8 2.2887 -1.0838 0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8898 0.5138 30 1 -0.3634 0.8901 0.5138 31 1 1.6911 5.0315 0.8869 32 1 1.6920 5.0300 -0.8931 33 1 2.0544 7.5131 0.2334 34 1 3.2542 7.7385 -1.1116 35 1 2.8285 8.7832 2.0896 36 1 5.5430 12.5029 2.4329 37 1 7.0076 12.3907 3.4377 38 1 6.6341 11.1070 2.2623 39 1 4.2486 11.5406 5.7874 40 1 5.6150 12.6432 5.4964 41 1 4.1504 12.7560 4.4907 42 1 6.7728 9.4003 4.0818 43 1 7.1468 10.6837 5.2568 44 1 5.7805 9.5804 5.5485 45 1 4.9376 5.7008 1.6601 46 1 3.2411 6.0786 2.1875 47 1 4.5939 1.1831 -0.0105 48 1 5.3533 -1.5384 0.8905 49 1 6.3084 -2.0735 -1.2323 50 1 3.2977 -3.6950 1.2250 51 1 3.2711 -3.6851 -1.2077 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13308380_15734238.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:48:59 Heat of formation + Delta-G solvation = -154.912363 kcal Electronic energy + Delta-G solvation = -32965.193964 eV Core-core repulsion = 28220.480023 eV Total energy + Delta-G solvation = -4744.713941 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.181 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -44.02939 -41.94934 -41.44014 -40.25881 -38.10966 -37.92499 -37.45633 -35.43155 -34.51831 -34.22192 -33.41249 -30.14939 -29.35494 -28.39216 -28.32575 -26.79757 -26.27620 -25.01992 -24.32015 -22.83461 -22.35677 -21.46804 -20.92045 -20.39922 -19.17870 -18.94415 -18.66791 -18.13339 -17.74579 -17.65602 -17.26641 -17.18804 -17.08920 -16.46545 -16.28657 -15.87616 -15.67177 -15.47512 -15.41875 -14.81619 -14.61528 -14.47150 -14.38698 -14.23706 -14.19429 -14.02707 -13.67973 -13.52647 -13.38741 -13.26617 -13.20298 -13.03156 -12.92236 -12.89214 -12.65032 -12.56236 -12.48374 -12.28632 -12.20812 -12.03842 -11.87528 -11.65690 -11.42050 -11.33103 -11.16435 -11.12985 -10.51570 -10.19316 -9.79500 -5.08416 -0.16495 0.58380 1.11007 1.15121 1.23638 1.54793 1.64907 1.70443 1.78724 1.99749 3.05961 3.11264 3.31526 3.37760 3.46454 3.57756 3.62585 3.69688 3.71916 3.77702 3.81199 3.92065 3.97665 4.12363 4.19775 4.20929 4.30443 4.39837 4.41011 4.47593 4.48429 4.56781 4.58914 4.61956 4.65843 4.73563 4.74025 4.76678 4.83529 4.85242 4.90908 4.92370 4.98633 5.02620 5.04949 5.14991 5.23929 5.24707 5.30196 5.46174 5.56688 5.66830 6.36715 6.54403 6.82960 7.30813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.098 3.902 3 C -0.259 4.259 4 C 0.545 3.455 5 O -0.528 6.528 6 O -0.350 6.350 7 C 0.077 3.923 8 C -0.101 4.101 9 H 0.112 0.888 10 C -0.120 4.120 11 C 0.137 3.863 12 H 0.109 0.891 13 N -0.690 5.690 14 C 0.643 3.357 15 O -0.594 6.594 16 O -0.370 6.370 17 C 0.127 3.873 18 C -0.180 4.180 19 C -0.138 4.138 20 C -0.180 4.180 21 C -0.146 4.146 22 C -0.128 4.128 23 C -0.037 4.037 24 C -0.039 4.039 25 O -0.560 6.560 26 Si 0.811 3.189 27 O -0.184 6.184 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.417 0.583 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.091 0.909 47 H 0.178 0.822 48 H 0.127 0.873 49 H 0.415 0.585 50 H -0.291 1.291 51 H -0.306 1.306 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.779 -1.745 1.455 2.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.045 3.955 3 C -0.262 4.262 4 C 0.392 3.608 5 O -0.420 6.420 6 O -0.266 6.266 7 C 0.004 3.996 8 C -0.120 4.120 9 H 0.130 0.870 10 C -0.158 4.158 11 C 0.033 3.967 12 H 0.127 0.873 13 N -0.349 5.349 14 C 0.397 3.603 15 O -0.485 6.485 16 O -0.285 6.285 17 C 0.090 3.910 18 C -0.237 4.237 19 C -0.195 4.195 20 C -0.237 4.237 21 C -0.185 4.185 22 C -0.147 4.147 23 C -0.084 4.084 24 C -0.148 4.148 25 O -0.372 6.372 26 Si 0.716 3.284 27 O -0.082 6.082 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.115 0.885 35 H 0.255 0.745 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.117 0.883 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.106 0.894 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.110 0.890 47 H 0.195 0.805 48 H 0.145 0.855 49 H 0.268 0.732 50 H -0.219 1.219 51 H -0.234 1.234 Dipole moment (debyes) X Y Z Total from point charges 0.856 -1.969 1.294 2.507 hybrid contribution -0.488 0.828 0.088 0.965 sum 0.368 -1.141 1.382 1.830 Atomic orbital electron populations 1.20853 0.81536 1.06194 1.05829 1.23417 0.95074 0.82526 0.94480 1.20392 0.94831 0.90802 1.20174 1.19874 0.83513 0.85392 0.72007 1.90818 1.18491 1.84701 1.47987 1.86557 1.39191 1.17138 1.83735 1.23288 0.97030 0.75991 1.03323 1.22370 0.97569 0.93303 0.98728 0.87023 1.23352 0.99525 0.92737 1.00173 1.22521 1.00174 0.85273 0.88700 0.87319 1.44763 1.09239 1.37907 1.43011 1.18424 0.84772 0.78700 0.78430 1.90901 1.17873 1.71796 1.67908 1.86316 1.41406 1.47864 1.52897 1.22359 0.85368 0.90608 0.92640 1.22473 1.01038 1.00797 0.99383 1.21890 1.02587 0.97377 0.97613 1.22468 1.00144 1.00425 1.00661 1.23665 1.02425 0.95468 0.96958 1.22810 0.96642 0.93134 1.02079 1.21845 0.82325 0.95260 1.08938 1.24011 0.90584 1.07119 0.93111 1.86406 1.44079 1.65229 1.41499 0.94195 0.82808 0.75195 0.76166 1.83730 1.17349 1.35336 1.71812 0.87555 0.87972 0.87539 0.90446 0.90240 0.87347 0.88503 0.74546 0.91915 0.89453 0.91764 0.91248 0.88290 0.91150 0.91798 0.89431 0.92036 0.91190 0.89016 0.80477 0.85516 0.73154 1.21858 1.23431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.15 9.89 71.23 0.70 0.56 16 2 C 0.10 0.72 7.38 25.28 0.19 0.91 16 3 C -0.26 -2.25 6.32 -19.01 -0.12 -2.37 16 4 C 0.55 4.96 7.95 70.18 0.56 5.51 16 5 O -0.53 -6.07 14.64 19.72 0.29 -5.78 16 6 O -0.35 -2.10 10.13 -56.87 -0.58 -2.68 16 7 C 0.08 0.04 5.32 71.98 0.38 0.42 16 8 C -0.10 0.31 4.03 -10.18 -0.04 0.27 16 9 H 0.11 -0.33 8.14 -2.39 -0.02 -0.35 16 10 C -0.12 0.71 7.38 31.12 0.23 0.94 16 11 C 0.14 -0.16 4.24 45.52 0.19 0.03 16 12 H 0.11 0.23 7.46 -2.39 -0.02 0.21 16 13 N -0.69 -0.30 5.36 -567.62 -3.04 -3.34 16 14 C 0.64 4.50 8.06 129.79 1.05 5.55 16 15 O -0.59 -7.32 11.48 19.82 0.23 -7.09 16 16 O -0.37 -2.17 9.94 -55.49 -0.55 -2.73 16 17 C 0.13 0.42 1.13 -10.80 -0.01 0.41 16 18 C -0.18 -0.63 8.37 71.98 0.60 -0.02 16 19 C -0.14 0.24 8.85 71.98 0.64 0.88 16 20 C -0.18 -0.67 8.37 71.98 0.60 -0.07 16 21 C -0.15 0.20 7.44 31.21 0.23 0.43 16 22 C -0.13 -0.84 10.91 23.66 0.26 -0.58 16 23 C -0.04 -0.22 6.24 24.76 0.15 -0.07 16 24 C -0.04 0.08 2.97 71.24 0.21 0.29 16 25 O -0.56 1.35 12.84 -148.98 -1.91 -0.56 16 26 Si 0.81 -2.05 32.08 68.60 2.20 0.15 16 27 O -0.18 -1.56 8.88 4.60 0.04 -1.52 16 28 H 0.11 -0.04 8.14 -2.38 -0.02 -0.06 16 29 H 0.10 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.11 0.32 6.49 -2.38 -0.02 0.30 16 31 H 0.08 0.00 7.85 -2.38 -0.02 -0.02 16 32 H 0.08 0.00 8.14 -2.39 -0.02 -0.02 16 33 H 0.11 -0.92 8.08 -2.39 -0.02 -0.94 16 34 H 0.10 -0.69 8.14 -2.39 -0.02 -0.71 16 35 H 0.42 -1.76 8.84 -92.71 -0.82 -2.58 16 36 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.09 0.00 8.14 -2.38 -0.02 -0.02 16 38 H 0.06 0.56 5.88 -2.39 -0.01 0.55 16 39 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 40 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 41 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 42 H 0.06 0.58 5.88 -2.39 -0.01 0.56 16 43 H 0.09 0.01 8.14 -2.39 -0.02 0.00 16 44 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 45 H 0.07 0.07 8.14 -2.38 -0.02 0.06 16 46 H 0.09 -0.17 7.91 -2.39 -0.02 -0.18 16 47 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 48 H 0.13 -1.02 7.96 -2.39 -0.02 -1.04 16 49 H 0.41 -5.83 8.74 -74.06 -0.65 -6.48 16 50 H -0.29 -1.12 7.11 99.48 0.71 -0.41 16 51 H -0.31 -2.09 7.11 99.48 0.71 -1.39 16 Total: 0.00 -25.21 423.40 2.03 -23.17 By element: Atomic # 1 Polarization: -12.23 SS G_CDS: -0.47 Total: -12.70 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 5.83 Total: 13.07 kcal Atomic # 7 Polarization: -0.30 SS G_CDS: -3.04 Total: -3.34 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -2.48 Total: -20.36 kcal Atomic # 14 Polarization: -2.05 SS G_CDS: 2.20 Total: 0.15 kcal Total: -25.21 2.03 -23.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13308380_15734238.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.738 kcal (2) G-P(sol) polarization free energy of solvation -25.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds