Wall clock time and date at job start Sat Mar 6 2021 02:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36503 * 125.80681 * 2 1 4 4 C 1.47230 * 127.19945 * 0.02562 * 3 2 1 5 5 O 1.21535 * 120.00687 * 0.20010 * 4 3 2 6 6 O 1.34778 * 120.00014 * 180.19384 * 4 3 2 7 7 C 1.45193 * 117.00059 * 180.02562 * 6 4 3 8 8 C 1.53008 * 109.47333 * 180.02562 * 7 6 4 9 9 H 1.08998 * 109.46794 * 54.99238 * 8 7 6 10 10 C 1.52989 * 109.47359 * 175.00098 * 8 7 6 11 11 C 1.52998 * 109.47397 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.46794 * 299.99886 * 11 10 8 13 13 H 1.09002 * 109.46566 * 299.99619 * 12 11 10 14 14 O 1.42903 * 109.47305 * 179.97438 * 12 11 10 15 15 C 1.53002 * 109.47222 * 59.99480 * 12 11 10 16 16 C 1.52997 * 109.47256 * 300.00349 * 15 12 11 17 17 C 1.47054 * 105.59946 * 180.15811 * 3 2 1 18 18 C 1.34163 * 105.94627 * 359.63344 * 17 3 2 19 19 C 1.50706 * 125.42500 * 180.20661 * 18 17 3 20 20 O 1.42898 * 109.46988 * 64.99828 * 19 18 17 21 21 Si 1.86295 * 109.46817 * 184.99934 * 19 18 17 22 22 O 1.33620 * 125.81086 * 179.75149 * 2 1 3 23 23 H 1.08996 * 109.46488 * 180.27494 * 1 2 3 24 24 H 1.09000 * 109.46775 * 300.27040 * 1 2 3 25 25 H 1.08997 * 109.47041 * 60.27463 * 1 2 3 26 26 H 1.09001 * 109.47217 * 299.99666 * 7 6 4 27 27 H 1.08998 * 109.47661 * 59.99848 * 7 6 4 28 28 H 1.09005 * 109.47346 * 299.99727 * 10 8 7 29 29 H 1.09002 * 109.47666 * 59.99333 * 10 8 7 30 30 H 1.09002 * 109.47253 * 59.99085 * 11 10 8 31 31 H 1.08994 * 109.47988 * 179.97438 * 11 10 8 32 32 H 0.96692 * 114.00281 * 179.97438 * 14 12 11 33 33 H 1.09004 * 109.46600 * 60.00168 * 15 12 11 34 34 H 1.09001 * 109.47038 * 180.02562 * 15 12 11 35 35 H 1.09002 * 109.47162 * 300.00246 * 16 15 12 36 36 H 1.09003 * 109.46931 * 180.02562 * 16 15 12 37 37 H 1.08002 * 127.02970 * 179.90034 * 17 3 2 38 38 H 1.08996 * 109.47026 * 304.99756 * 19 18 17 39 39 H 0.96705 * 113.99620 * 179.97438 * 20 19 18 40 40 H 1.48503 * 109.99957 * 178.68312 * 21 19 18 41 41 H 1.48505 * 110.00190 * 299.99605 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3056 1.1070 0.0000 4 6 1.8753 2.5150 0.0005 5 8 0.6912 2.7887 0.0047 6 8 2.7946 3.5006 -0.0035 7 6 2.2982 4.8651 -0.0021 8 6 3.4794 5.8376 -0.0078 9 1 4.1309 5.6129 -0.8523 10 6 2.9593 7.2710 -0.1321 11 6 4.1403 8.2436 -0.1371 12 6 4.9267 8.0976 1.1673 13 1 4.2747 8.3221 2.0115 14 8 6.0302 9.0055 1.1624 15 6 5.4468 6.6641 1.2916 16 6 4.2656 5.6916 1.2966 17 6 3.6857 0.5991 -0.0039 18 6 3.5860 -0.7388 0.0024 19 6 4.7458 -1.7012 0.0059 20 8 5.4770 -1.5614 1.2257 21 14 4.1061 -3.4449 -0.1385 22 8 2.2889 -1.0836 0.0047 23 1 -0.3632 -1.0277 0.0049 24 1 -0.3633 0.5180 0.8876 25 1 -0.3633 0.5095 -0.8924 26 1 1.6877 5.0305 -0.8898 27 1 1.6946 5.0313 0.8901 28 1 2.3987 7.3749 -1.0611 29 1 2.3077 7.4957 0.7124 30 1 4.7923 8.0191 -0.9813 31 1 3.7699 9.2648 -0.2261 32 1 6.5740 8.9679 1.9611 33 1 6.0987 6.4397 0.4473 34 1 6.0066 6.5601 2.2211 35 1 3.6137 5.9162 2.1408 36 1 4.6362 4.6704 1.3856 37 1 4.5939 1.1835 -0.0065 38 1 5.4010 -1.4835 -0.8375 39 1 6.2393 -2.1522 1.2971 40 1 5.2416 -4.4016 -0.1682 41 1 3.2114 -3.7541 1.0057 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_13308380_16737258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 02:31:25 Heat of formation + Delta-G solvation = -164.051165 kcal Electronic energy + Delta-G solvation = -24162.362142 eV Core-core repulsion = 20396.199013 eV Total energy + Delta-G solvation = -3766.163129 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.139 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.78556 -41.21139 -40.01288 -38.15943 -37.64737 -36.48874 -34.23410 -33.31083 -31.91058 -31.87795 -29.64034 -27.12706 -25.70575 -24.37415 -23.82744 -22.63211 -22.10061 -20.99981 -20.41610 -18.95067 -18.64881 -18.20705 -17.69437 -17.57344 -17.06237 -16.89183 -16.35057 -15.98206 -15.72632 -15.51922 -15.18403 -14.83740 -14.39144 -14.27791 -14.13247 -14.05296 -13.94972 -13.80270 -13.57084 -13.27165 -13.20536 -13.08687 -12.70065 -12.54040 -12.18501 -12.12869 -11.87172 -11.71205 -11.52699 -11.42505 -11.14302 -10.93152 -10.73483 -10.70638 -9.62823 -5.04118 0.11890 0.77445 1.07992 1.27737 1.60059 1.73510 1.90266 2.07992 3.11599 3.14447 3.40587 3.54875 3.59122 3.66385 3.71427 3.85067 4.03522 4.07683 4.10566 4.14652 4.23734 4.30851 4.34305 4.41478 4.45523 4.46130 4.49988 4.53467 4.62256 4.74446 4.75457 4.90013 5.00741 5.02842 5.04555 5.10849 5.11356 5.19643 5.27590 5.35896 5.49226 5.90450 6.22437 6.69660 6.84281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.107 3.893 3 C -0.240 4.240 4 C 0.543 3.457 5 O -0.509 6.509 6 O -0.347 6.347 7 C 0.073 3.927 8 C -0.089 4.089 9 H 0.086 0.914 10 C -0.110 4.110 11 C -0.111 4.111 12 C 0.102 3.898 13 H 0.055 0.945 14 O -0.569 6.569 15 C -0.152 4.152 16 C -0.112 4.112 17 C -0.123 4.123 18 C -0.015 4.015 19 C -0.037 4.037 20 O -0.533 6.533 21 Si 0.699 3.301 22 O -0.162 6.162 23 H 0.085 0.915 24 H 0.100 0.900 25 H 0.101 0.899 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.379 0.621 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.164 0.836 38 H 0.099 0.901 39 H 0.389 0.611 40 H -0.251 1.251 41 H -0.251 1.251 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.071 -2.172 -1.516 2.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.054 3.946 3 C -0.242 4.242 4 C 0.389 3.611 5 O -0.399 6.399 6 O -0.264 6.264 7 C -0.001 4.001 8 C -0.107 4.107 9 H 0.104 0.896 10 C -0.148 4.148 11 C -0.148 4.148 12 C 0.044 3.956 13 H 0.073 0.927 14 O -0.375 6.375 15 C -0.189 4.189 16 C -0.150 4.150 17 C -0.143 4.143 18 C -0.063 4.063 19 C -0.145 4.145 20 O -0.342 6.342 21 Si 0.597 3.403 22 O -0.059 6.059 23 H 0.104 0.896 24 H 0.119 0.881 25 H 0.120 0.880 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.226 0.774 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.182 0.818 38 H 0.116 0.884 39 H 0.238 0.762 40 H -0.176 1.176 41 H -0.175 1.175 Dipole moment (debyes) X Y Z Total from point charges -0.095 -2.545 -1.612 3.014 hybrid contribution 1.323 0.267 1.283 1.862 sum 1.228 -2.278 -0.328 2.609 Atomic orbital electron populations 1.20638 0.82958 1.04597 1.05561 1.22896 0.94051 0.82644 0.94988 1.20172 0.94012 0.90634 1.19424 1.19823 0.83652 0.85078 0.72573 1.90862 1.17887 1.84475 1.46699 1.86535 1.39347 1.16363 1.84147 1.23172 0.96822 0.77141 1.02958 1.21265 0.96072 0.93454 0.99910 0.89577 1.21474 0.97676 0.92540 1.03095 1.21437 0.96407 0.99926 0.97062 1.21855 0.87701 0.87954 0.98128 0.92707 1.86516 1.43003 1.62367 1.45618 1.22276 0.98526 0.95340 1.02796 1.21532 0.96687 1.00021 0.96751 1.22607 0.96607 0.92935 1.02114 1.21009 0.81917 0.94145 1.09194 1.23814 0.91671 1.09025 0.90039 1.86570 1.45538 1.64469 1.37640 0.94472 0.83104 0.72884 0.89821 1.83677 1.16408 1.34592 1.71272 0.89645 0.88125 0.88023 0.90795 0.90912 0.90632 0.91177 0.90917 0.90781 0.77396 0.90907 0.91524 0.91727 0.90705 0.81825 0.88354 0.76201 1.17577 1.17466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.05 9.14 36.01 0.33 0.38 16 2 C 0.11 0.20 7.38 -34.93 -0.26 -0.05 16 3 C -0.24 -0.72 6.32 -103.30 -0.65 -1.37 16 4 C 0.54 2.03 7.95 34.38 0.27 2.31 16 5 O -0.51 -2.62 15.46 -19.29 -0.30 -2.92 16 6 O -0.35 -0.91 9.67 -40.70 -0.39 -1.31 16 7 C 0.07 0.05 4.85 37.16 0.18 0.23 16 8 C -0.09 0.05 2.44 -90.62 -0.22 -0.17 16 9 H 0.09 -0.02 8.14 -51.93 -0.42 -0.44 16 10 C -0.11 0.14 5.20 -26.74 -0.14 0.00 16 11 C -0.11 0.01 5.57 -26.73 -0.15 -0.14 16 12 C 0.10 0.00 3.47 -26.73 -0.09 -0.09 16 13 H 0.05 -0.03 8.14 -51.93 -0.42 -0.45 16 14 O -0.57 -0.70 13.32 -35.23 -0.47 -1.17 16 15 C -0.15 0.09 5.54 -26.73 -0.15 -0.05 16 16 C -0.11 0.05 5.10 -26.73 -0.14 -0.08 16 17 C -0.12 -0.26 10.93 -37.44 -0.41 -0.67 16 18 C -0.02 -0.03 6.22 -35.74 -0.22 -0.25 16 19 C -0.04 0.03 2.96 36.01 0.11 0.13 16 20 O -0.53 -0.12 12.86 -35.23 -0.45 -0.57 16 21 Si 0.70 -0.88 32.09 -169.99 -5.46 -6.33 16 22 O -0.16 -0.32 8.89 7.73 0.07 -0.25 16 23 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 24 H 0.10 -0.04 8.07 -51.93 -0.42 -0.46 16 25 H 0.10 -0.09 8.10 -51.93 -0.42 -0.51 16 26 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 27 H 0.07 0.06 8.14 -51.93 -0.42 -0.37 16 28 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 29 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 30 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 31 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 32 H 0.38 -0.98 9.08 45.56 0.41 -0.57 16 33 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 34 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 35 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 36 H 0.07 0.02 7.82 -51.93 -0.41 -0.38 16 37 H 0.16 0.15 8.06 -52.49 -0.42 -0.27 16 38 H 0.10 -0.32 7.96 -51.93 -0.41 -0.74 16 39 H 0.39 -1.65 8.74 45.56 0.40 -1.25 16 40 H -0.25 0.03 7.11 56.52 0.40 0.43 16 41 H -0.25 -0.66 7.11 56.52 0.40 -0.26 16 LS Contribution 345.11 15.07 5.20 5.20 Total: 0.00 -7.86 345.11 -8.88 -16.74 By element: Atomic # 1 Polarization: -4.02 SS G_CDS: -5.54 Total: -9.56 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -1.54 Total: 0.17 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -1.55 Total: -6.22 kcal Atomic # 14 Polarization: -0.88 SS G_CDS: -5.46 Total: -6.33 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -7.86 -8.88 -16.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13308380_16737258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.312 kcal (2) G-P(sol) polarization free energy of solvation -7.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds