Wall clock time and date at job start Sat Mar 6 2021 02:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36503 * 125.80681 * 2 1 4 4 C 1.47230 * 127.19945 * 0.02562 * 3 2 1 5 5 O 1.21535 * 120.00687 * 0.20010 * 4 3 2 6 6 O 1.34778 * 120.00014 * 180.19384 * 4 3 2 7 7 C 1.45193 * 117.00059 * 180.02562 * 6 4 3 8 8 C 1.53008 * 109.47333 * 180.02562 * 7 6 4 9 9 H 1.08998 * 109.46794 * 54.99238 * 8 7 6 10 10 C 1.52989 * 109.47359 * 175.00098 * 8 7 6 11 11 C 1.52998 * 109.47397 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.46794 * 299.99886 * 11 10 8 13 13 H 1.09002 * 109.46566 * 299.99619 * 12 11 10 14 14 O 1.42903 * 109.47305 * 179.97438 * 12 11 10 15 15 C 1.53002 * 109.47222 * 59.99480 * 12 11 10 16 16 C 1.52997 * 109.47256 * 300.00349 * 15 12 11 17 17 C 1.47054 * 105.59946 * 180.15811 * 3 2 1 18 18 C 1.34163 * 105.94627 * 359.63344 * 17 3 2 19 19 C 1.50706 * 125.42500 * 180.20661 * 18 17 3 20 20 O 1.42898 * 109.46988 * 64.99828 * 19 18 17 21 21 Si 1.86295 * 109.46817 * 184.99934 * 19 18 17 22 22 O 1.33620 * 125.81086 * 179.75149 * 2 1 3 23 23 H 1.08996 * 109.46488 * 180.27494 * 1 2 3 24 24 H 1.09000 * 109.46775 * 300.27040 * 1 2 3 25 25 H 1.08997 * 109.47041 * 60.27463 * 1 2 3 26 26 H 1.09001 * 109.47217 * 299.99666 * 7 6 4 27 27 H 1.08998 * 109.47661 * 59.99848 * 7 6 4 28 28 H 1.09005 * 109.47346 * 299.99727 * 10 8 7 29 29 H 1.09002 * 109.47666 * 59.99333 * 10 8 7 30 30 H 1.09002 * 109.47253 * 59.99085 * 11 10 8 31 31 H 1.08994 * 109.47988 * 179.97438 * 11 10 8 32 32 H 0.96692 * 114.00281 * 179.97438 * 14 12 11 33 33 H 1.09004 * 109.46600 * 60.00168 * 15 12 11 34 34 H 1.09001 * 109.47038 * 180.02562 * 15 12 11 35 35 H 1.09002 * 109.47162 * 300.00246 * 16 15 12 36 36 H 1.09003 * 109.46931 * 180.02562 * 16 15 12 37 37 H 1.08002 * 127.02970 * 179.90034 * 17 3 2 38 38 H 1.08996 * 109.47026 * 304.99756 * 19 18 17 39 39 H 0.96705 * 113.99620 * 179.97438 * 20 19 18 40 40 H 1.48503 * 109.99957 * 178.68312 * 21 19 18 41 41 H 1.48505 * 110.00190 * 299.99605 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3056 1.1070 0.0000 4 6 1.8753 2.5150 0.0005 5 8 0.6912 2.7887 0.0047 6 8 2.7946 3.5006 -0.0035 7 6 2.2982 4.8651 -0.0021 8 6 3.4794 5.8376 -0.0078 9 1 4.1309 5.6129 -0.8523 10 6 2.9593 7.2710 -0.1321 11 6 4.1403 8.2436 -0.1371 12 6 4.9267 8.0976 1.1673 13 1 4.2747 8.3221 2.0115 14 8 6.0302 9.0055 1.1624 15 6 5.4468 6.6641 1.2916 16 6 4.2656 5.6916 1.2966 17 6 3.6857 0.5991 -0.0039 18 6 3.5860 -0.7388 0.0024 19 6 4.7458 -1.7012 0.0059 20 8 5.4770 -1.5614 1.2257 21 14 4.1061 -3.4449 -0.1385 22 8 2.2889 -1.0836 0.0047 23 1 -0.3632 -1.0277 0.0049 24 1 -0.3633 0.5180 0.8876 25 1 -0.3633 0.5095 -0.8924 26 1 1.6877 5.0305 -0.8898 27 1 1.6946 5.0313 0.8901 28 1 2.3987 7.3749 -1.0611 29 1 2.3077 7.4957 0.7124 30 1 4.7923 8.0191 -0.9813 31 1 3.7699 9.2648 -0.2261 32 1 6.5740 8.9679 1.9611 33 1 6.0987 6.4397 0.4473 34 1 6.0066 6.5601 2.2211 35 1 3.6137 5.9162 2.1408 36 1 4.6362 4.6704 1.3856 37 1 4.5939 1.1835 -0.0065 38 1 5.4010 -1.4835 -0.8375 39 1 6.2393 -2.1522 1.2971 40 1 5.2416 -4.4016 -0.1682 41 1 3.2114 -3.7541 1.0057 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13308380_16737258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 02:31:24 Heat of formation + Delta-G solvation = -162.454027 kcal Electronic energy + Delta-G solvation = -24162.292885 eV Core-core repulsion = 20396.199013 eV Total energy + Delta-G solvation = -3766.093872 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.139 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.89658 -41.40497 -40.03797 -38.11689 -37.80672 -36.56423 -34.36606 -33.35284 -31.94685 -31.84448 -29.63536 -27.19848 -25.75193 -24.45771 -23.79955 -22.71984 -22.15692 -21.01179 -20.53276 -18.97218 -18.74210 -18.21916 -17.82885 -17.71449 -17.16139 -16.97818 -16.39040 -15.95641 -15.76024 -15.51060 -15.24093 -14.87016 -14.44798 -14.29557 -14.22611 -14.05431 -13.95212 -13.85625 -13.61880 -13.23722 -13.18987 -13.11202 -12.71664 -12.57263 -12.20802 -12.14923 -11.95696 -11.74494 -11.66288 -11.52910 -11.12202 -11.06432 -10.73008 -10.65406 -9.72478 -4.94550 -0.04507 0.66910 1.14973 1.23456 1.57466 1.67316 1.86889 1.94485 3.12964 3.20002 3.48766 3.51632 3.59761 3.61098 3.71734 3.79304 4.03109 4.04133 4.13916 4.23152 4.25360 4.31422 4.33363 4.44823 4.45491 4.47540 4.53837 4.55034 4.58482 4.70468 4.78969 4.93509 5.03372 5.04983 5.06889 5.10615 5.13173 5.15533 5.26959 5.30658 5.42778 5.79574 6.50939 6.61355 6.84729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.107 3.893 3 C -0.263 4.263 4 C 0.542 3.458 5 O -0.529 6.529 6 O -0.350 6.350 7 C 0.070 3.930 8 C -0.081 4.081 9 H 0.083 0.917 10 C -0.105 4.105 11 C -0.112 4.112 12 C 0.100 3.900 13 H 0.061 0.939 14 O -0.590 6.590 15 C -0.145 4.145 16 C -0.110 4.110 17 C -0.133 4.133 18 C -0.023 4.023 19 C -0.042 4.042 20 O -0.555 6.555 21 Si 0.770 3.230 22 O -0.167 6.167 23 H 0.105 0.895 24 H 0.098 0.902 25 H 0.105 0.895 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.393 0.607 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.172 0.828 38 H 0.130 0.870 39 H 0.406 0.594 40 H -0.262 1.262 41 H -0.308 1.308 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.454 -2.388 -1.802 3.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.054 3.946 3 C -0.266 4.266 4 C 0.389 3.611 5 O -0.421 6.421 6 O -0.267 6.267 7 C -0.003 4.003 8 C -0.100 4.100 9 H 0.101 0.899 10 C -0.142 4.142 11 C -0.149 4.149 12 C 0.042 3.958 13 H 0.079 0.921 14 O -0.398 6.398 15 C -0.183 4.183 16 C -0.148 4.148 17 C -0.152 4.152 18 C -0.070 4.070 19 C -0.150 4.150 20 O -0.368 6.368 21 Si 0.674 3.326 22 O -0.064 6.064 23 H 0.124 0.876 24 H 0.117 0.883 25 H 0.124 0.876 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.243 0.757 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.189 0.811 38 H 0.148 0.852 39 H 0.259 0.741 40 H -0.187 1.187 41 H -0.236 1.236 Dipole moment (debyes) X Y Z Total from point charges 0.331 -2.756 -1.909 3.369 hybrid contribution 1.217 0.324 1.433 1.908 sum 1.548 -2.432 -0.477 2.922 Atomic orbital electron populations 1.20740 0.81454 1.05949 1.05543 1.23337 0.94985 0.82394 0.93889 1.20334 0.94879 0.90602 1.20764 1.19988 0.83497 0.85540 0.72066 1.90838 1.18566 1.84823 1.47912 1.86535 1.39293 1.16982 1.83867 1.23308 0.97419 0.76514 1.03056 1.21215 0.95495 0.93509 0.99777 0.89899 1.21437 0.97366 0.91608 1.03811 1.21448 0.96625 0.99995 0.96864 1.21914 0.87596 0.87989 0.98320 0.92073 1.86477 1.43600 1.62772 1.46950 1.22207 0.98295 0.94933 1.02870 1.21503 0.96804 0.99566 0.96893 1.22756 0.96568 0.93351 1.02568 1.21508 0.82275 0.94649 1.08553 1.24076 0.91518 1.08569 0.90818 1.86519 1.46588 1.65445 1.38199 0.93631 0.80062 0.71548 0.87403 1.83697 1.16770 1.34697 1.71219 0.87619 0.88347 0.87649 0.90604 0.90924 0.89892 0.90528 0.91708 0.91066 0.75733 0.91725 0.90698 0.91373 0.91549 0.81089 0.85209 0.74089 1.18731 1.23597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.08 9.14 71.24 0.65 0.73 16 2 C 0.11 0.47 7.38 25.28 0.19 0.66 16 3 C -0.26 -1.81 6.32 -19.01 -0.12 -1.93 16 4 C 0.54 4.63 7.95 70.19 0.56 5.18 16 5 O -0.53 -6.00 15.46 19.72 0.30 -5.70 16 6 O -0.35 -2.14 9.67 -56.89 -0.55 -2.69 16 7 C 0.07 0.14 4.85 71.98 0.35 0.49 16 8 C -0.08 0.07 2.44 -10.79 -0.03 0.05 16 9 H 0.08 0.00 8.14 -2.39 -0.02 -0.02 16 10 C -0.10 0.27 5.20 30.59 0.16 0.43 16 11 C -0.11 0.01 5.57 30.60 0.17 0.18 16 12 C 0.10 -0.01 3.47 30.60 0.11 0.10 16 13 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 14 O -0.59 -1.44 13.32 -148.98 -1.98 -3.43 16 15 C -0.15 0.18 5.54 30.59 0.17 0.35 16 16 C -0.11 0.09 5.10 30.59 0.16 0.24 16 17 C -0.13 -0.63 10.93 23.65 0.26 -0.37 16 18 C -0.02 -0.08 6.22 24.76 0.15 0.08 16 19 C -0.04 0.09 2.96 71.24 0.21 0.31 16 20 O -0.56 0.04 12.86 -148.98 -1.92 -1.87 16 21 Si 0.77 -2.10 32.09 68.60 2.20 0.10 16 22 O -0.17 -0.72 8.89 4.73 0.04 -0.68 16 23 H 0.11 -0.56 8.14 -2.39 -0.02 -0.58 16 24 H 0.10 -0.02 8.07 -2.39 -0.02 -0.04 16 25 H 0.11 -0.16 8.10 -2.39 -0.02 -0.18 16 26 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 27 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.08 -0.32 8.14 -2.38 -0.02 -0.34 16 29 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 30 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.39 -2.09 9.08 -74.06 -0.67 -2.76 16 33 H 0.06 0.04 8.14 -2.38 -0.02 0.02 16 34 H 0.07 -0.22 8.14 -2.39 -0.02 -0.23 16 35 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 36 H 0.07 0.08 7.82 -2.39 -0.02 0.06 16 37 H 0.17 0.38 8.06 -2.91 -0.02 0.36 16 38 H 0.13 -1.10 7.96 -2.39 -0.02 -1.12 16 39 H 0.41 -3.79 8.74 -74.05 -0.65 -4.43 16 40 H -0.26 0.27 7.11 99.48 0.71 0.98 16 41 H -0.31 -2.14 7.11 99.48 0.71 -1.43 16 Total: 0.00 -18.54 345.11 0.84 -17.70 By element: Atomic # 1 Polarization: -9.68 SS G_CDS: -0.24 Total: -9.92 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 2.98 Total: 6.49 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -4.10 Total: -14.37 kcal Atomic # 14 Polarization: -2.10 SS G_CDS: 2.20 Total: 0.10 kcal Total: -18.54 0.84 -17.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13308380_16737258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.754 kcal (2) G-P(sol) polarization free energy of solvation -18.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds