Wall clock time and date at job start Sat Mar 6 2021 02:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36496 * 125.80717 * 2 1 4 4 C 1.47231 * 127.20133 * 359.97438 * 3 2 1 5 5 O 1.21532 * 120.00209 * 0.02562 * 4 3 2 6 6 O 1.34774 * 119.99836 * 180.02562 * 4 3 2 7 7 C 1.45194 * 117.00102 * 180.02562 * 6 4 3 8 8 C 1.52998 * 109.47228 * 180.02562 * 7 6 4 9 9 O 1.42903 * 109.46954 * 65.00315 * 8 7 6 10 10 C 1.42904 * 113.99498 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.46694 * 179.97438 * 10 9 8 12 12 O 1.42902 * 109.47320 * 65.00117 * 11 10 9 13 13 Si 1.63092 * 114.00061 * 180.02562 * 12 11 10 14 14 C 1.86298 * 109.47484 * 300.00032 * 13 12 11 15 15 C 1.86307 * 109.47210 * 59.99860 * 13 12 11 16 16 C 1.86300 * 109.46995 * 179.97438 * 13 12 11 17 17 C 1.52999 * 109.47216 * 60.00337 * 16 13 12 18 18 C 1.53005 * 109.47210 * 179.97438 * 16 13 12 19 19 C 1.53004 * 109.47339 * 299.99935 * 16 13 12 20 20 C 1.47058 * 105.59677 * 179.97438 * 3 2 1 21 21 C 1.34164 * 105.94897 * 359.97438 * 20 3 2 22 22 C 1.50704 * 125.42657 * 179.97438 * 21 20 3 23 23 O 1.42900 * 109.47058 * 299.99952 * 22 21 20 24 24 Si 1.86295 * 109.46899 * 180.02562 * 22 21 20 25 25 H 1.48501 * 109.47379 * 60.00179 * 24 22 21 26 26 H 1.48500 * 109.46995 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47167 * 300.00334 * 24 22 21 28 28 O 1.33628 * 125.80853 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47161 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47120 * 300.00140 * 1 2 3 31 31 H 1.08995 * 109.47555 * 60.00124 * 1 2 3 32 32 H 1.09000 * 109.47087 * 300.00403 * 7 6 4 33 33 H 1.09001 * 109.47052 * 59.99713 * 7 6 4 34 34 H 1.09003 * 109.46721 * 184.99696 * 8 7 6 35 35 H 1.08997 * 109.47285 * 305.00120 * 8 7 6 36 36 H 1.08995 * 109.47251 * 299.99422 * 10 9 8 37 37 H 1.08997 * 109.47111 * 60.00033 * 10 9 8 38 38 H 1.08995 * 109.46893 * 184.99909 * 11 10 9 39 39 H 1.09000 * 109.47142 * 305.00144 * 11 10 9 40 40 H 1.08999 * 109.47047 * 59.99491 * 14 13 12 41 41 H 1.08994 * 109.47330 * 180.02562 * 14 13 12 42 42 H 1.09009 * 109.46368 * 300.00170 * 14 13 12 43 43 H 1.09002 * 109.46637 * 60.00079 * 15 13 12 44 44 H 1.08998 * 109.46969 * 180.02562 * 15 13 12 45 45 H 1.08999 * 109.46840 * 300.00215 * 15 13 12 46 46 H 1.08994 * 109.47075 * 59.99634 * 17 16 13 47 47 H 1.08992 * 109.47257 * 179.97438 * 17 16 13 48 48 H 1.09007 * 109.46527 * 299.99829 * 17 16 13 49 49 H 1.09005 * 109.46631 * 60.00124 * 18 16 13 50 50 H 1.08992 * 109.47227 * 180.02562 * 18 16 13 51 51 H 1.09002 * 109.47216 * 300.00736 * 18 16 13 52 52 H 1.08995 * 109.46516 * 59.99997 * 19 16 13 53 53 H 1.09001 * 109.46722 * 179.97438 * 19 16 13 54 54 H 1.08997 * 109.47110 * 299.99798 * 19 16 13 55 55 H 1.07999 * 127.02824 * 180.25994 * 20 3 2 56 56 H 1.08999 * 109.47033 * 59.99830 * 22 21 20 57 57 H 0.96697 * 114.00189 * 300.00072 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.1070 0.0000 4 6 1.8753 2.5150 -0.0005 5 8 0.6912 2.7886 -0.0006 6 8 2.7946 3.5005 -0.0010 7 6 2.2983 4.8650 -0.0009 8 6 3.4795 5.8374 -0.0021 9 8 4.2081 5.7002 -1.2238 10 6 5.3378 6.5692 -1.3273 11 6 6.0387 6.3369 -2.6674 12 8 5.1678 6.7204 -3.7334 13 14 5.8082 6.5164 -5.2194 14 6 7.3541 7.5442 -5.3758 15 6 6.2291 4.7193 -5.4729 16 6 4.5728 7.0519 -6.5069 17 6 4.2267 8.5277 -6.2990 18 6 5.1738 6.8612 -7.9010 19 6 3.3035 6.2073 -6.3783 20 6 3.6856 0.5989 0.0006 21 6 3.5859 -0.7390 0.0015 22 6 4.7456 -1.7014 0.0019 23 8 5.5421 -1.4880 -1.1652 24 14 4.1017 -3.4496 0.0024 25 1 3.2738 -3.6726 -1.2101 26 1 5.2445 -4.3979 0.0021 27 1 3.2737 -3.6717 1.2148 28 8 2.2888 -1.0837 0.0005 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6908 5.0307 -0.8906 33 1 1.6915 5.0308 0.8893 34 1 3.1094 6.8587 0.0875 35 1 4.1353 5.6134 0.8392 36 1 5.0059 7.6056 -1.2654 37 1 6.0323 6.3609 -0.5135 38 1 6.9494 6.9343 -2.7095 39 1 6.2917 5.2813 -2.7669 40 1 8.0768 7.2305 -4.6225 41 1 7.7819 7.4082 -6.3691 42 1 7.1078 8.5957 -5.2275 43 1 5.3245 4.1180 -5.3814 44 1 6.6575 4.5831 -6.4658 45 1 6.9517 4.4057 -4.7196 46 1 5.1309 9.1293 -6.3906 47 1 3.5042 8.8411 -7.0525 48 1 3.7986 8.6640 -5.3058 49 1 5.4207 5.8099 -8.0494 50 1 4.4512 7.1749 -8.6542 51 1 6.0780 7.4631 -7.9923 52 1 2.8755 6.3437 -5.3852 53 1 2.5806 6.5210 -7.1313 54 1 3.5501 5.1560 -6.5265 55 1 4.5938 1.1833 0.0047 56 1 5.3535 -1.5374 0.8916 57 1 5.0646 -1.6168 -1.9962 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13308380_16896872.mol2 57 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 02:37:26 Heat of formation + Delta-G solvation = -246.286551 kcal Electronic energy + Delta-G solvation = -34932.942466 eV Core-core repulsion = 30225.937713 eV Total energy + Delta-G solvation = -4707.004753 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 388.201 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.90316 -41.30657 -39.26478 -38.04428 -37.80317 -37.16984 -36.82760 -34.37449 -33.23705 -31.99860 -29.90461 -29.45043 -29.17782 -29.05992 -27.83922 -27.38475 -26.32989 -24.85389 -23.54921 -23.44160 -22.53543 -20.74383 -20.41711 -19.13810 -18.53538 -18.20276 -17.98705 -17.82542 -17.52852 -17.01897 -16.82712 -16.33024 -16.19311 -15.87042 -15.84539 -15.55898 -15.48745 -14.85850 -14.83378 -14.74089 -14.45137 -14.37354 -14.29483 -14.05643 -13.94258 -13.93136 -13.80578 -13.52308 -13.36171 -13.17334 -12.99539 -12.96437 -12.94407 -12.91867 -12.80617 -12.63784 -12.44854 -12.37623 -12.22063 -12.07996 -11.80642 -11.77659 -11.72707 -11.67379 -11.49444 -11.17832 -11.05796 -10.61571 -10.56074 -10.28592 -10.04678 -9.71408 -0.04828 0.70364 1.06095 1.24217 1.47502 1.56191 1.58210 1.72086 1.80481 1.87422 1.91587 2.15016 2.50485 2.66819 3.16275 3.44638 3.58316 3.69124 3.85703 4.03503 4.05850 4.11536 4.12130 4.15242 4.24313 4.31799 4.36302 4.41989 4.45167 4.49784 4.51145 4.52288 4.56971 4.59348 4.62367 4.72895 4.73963 4.75473 4.79507 4.80336 4.81234 4.82963 4.85399 4.99002 5.04462 5.08298 5.08679 5.13142 5.19955 5.26905 5.33293 5.39975 5.44179 5.54132 5.60088 5.64845 5.77721 6.26693 6.54894 6.61711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.104 3.896 3 C -0.262 4.262 4 C 0.540 3.460 5 O -0.532 6.532 6 O -0.347 6.347 7 C 0.065 3.935 8 C 0.062 3.938 9 O -0.401 6.401 10 C 0.053 3.947 11 C 0.074 3.926 12 O -0.637 6.637 13 Si 1.311 2.689 14 C -0.513 4.513 15 C -0.518 4.518 16 C -0.383 4.383 17 C -0.135 4.135 18 C -0.140 4.140 19 C -0.135 4.135 20 C -0.130 4.130 21 C -0.063 4.063 22 C -0.034 4.034 23 O -0.538 6.538 24 Si 0.991 3.009 25 H -0.261 1.261 26 H -0.253 1.253 27 H -0.261 1.261 28 O -0.171 6.171 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.047 0.953 48 H 0.054 0.946 49 H 0.061 0.939 50 H 0.049 0.951 51 H 0.066 0.934 52 H 0.050 0.950 53 H 0.048 0.952 54 H 0.056 0.944 55 H 0.172 0.828 56 H 0.155 0.845 57 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.250 0.003 1.785 3.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.051 3.949 3 C -0.265 4.265 4 C 0.387 3.613 5 O -0.424 6.424 6 O -0.264 6.264 7 C -0.008 4.008 8 C -0.014 4.014 9 O -0.321 6.321 10 C -0.023 4.023 11 C -0.001 4.001 12 O -0.597 6.597 13 Si 1.441 2.559 14 C -0.615 4.615 15 C -0.619 4.619 16 C -0.425 4.425 17 C -0.192 4.192 18 C -0.197 4.197 19 C -0.192 4.192 20 C -0.149 4.149 21 C -0.111 4.111 22 C -0.144 4.144 23 O -0.346 6.346 24 Si 0.813 3.187 25 H -0.185 1.185 26 H -0.176 1.176 27 H -0.186 1.186 28 O -0.069 6.069 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.066 0.934 48 H 0.073 0.927 49 H 0.080 0.920 50 H 0.069 0.931 51 H 0.085 0.915 52 H 0.070 0.930 53 H 0.067 0.933 54 H 0.075 0.925 55 H 0.190 0.810 56 H 0.173 0.827 57 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 2.702 -0.939 2.209 3.614 hybrid contribution -0.249 0.854 -0.730 1.151 sum 2.453 -0.085 1.478 2.865 Atomic orbital electron populations 1.20720 0.81738 1.05790 1.05504 1.23278 0.94926 0.82520 0.94202 1.20359 0.95141 0.90451 1.20530 1.20056 0.83488 0.85700 0.72007 1.90833 1.18605 1.84877 1.48063 1.86597 1.39163 1.16863 1.83754 1.23342 0.97066 0.76709 1.03687 1.22669 0.92865 0.97956 0.87880 1.87989 1.43067 1.62555 1.38442 1.22856 0.88186 0.94376 0.96864 1.22323 0.91584 1.00497 0.85687 1.85389 1.55875 1.85140 1.33267 0.76289 0.61329 0.64028 0.54265 1.27021 1.18347 1.10773 1.05346 1.27132 1.05267 1.24233 1.05299 1.25920 1.07806 0.99744 1.09048 1.21522 1.01644 0.94630 1.01416 1.21597 1.00912 1.02057 0.95126 1.21514 0.97008 0.99380 1.01343 1.22761 0.96383 0.93393 1.02399 1.23108 0.82760 0.96062 1.09156 1.24511 0.89930 1.06470 0.93519 1.86551 1.38664 1.93299 1.16037 0.85039 0.78920 0.73550 0.81190 1.18537 1.17621 1.18564 1.83714 1.17118 1.34699 1.71331 0.87778 0.87992 0.88201 0.91206 0.88182 0.88676 0.90811 0.91601 0.89965 0.88744 0.91814 0.90699 0.90334 0.90867 0.91989 0.90399 0.91135 0.91763 0.93392 0.92724 0.92030 0.93141 0.91511 0.93046 0.93281 0.92540 0.81035 0.82748 0.75681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.03 9.14 71.23 0.65 0.68 16 2 C 0.10 0.47 7.38 25.28 0.19 0.65 16 3 C -0.26 -1.88 6.32 -19.01 -0.12 -2.00 16 4 C 0.54 5.25 7.95 70.19 0.56 5.81 16 5 O -0.53 -6.62 15.46 19.73 0.30 -6.31 16 6 O -0.35 -2.82 10.10 -54.19 -0.55 -3.37 16 7 C 0.07 0.23 5.85 71.98 0.42 0.65 16 8 C 0.06 -0.01 6.33 71.98 0.46 0.44 16 9 O -0.40 -1.92 10.28 -136.02 -1.40 -3.32 16 10 C 0.05 -0.05 6.32 71.98 0.45 0.40 16 11 C 0.07 -0.07 5.51 71.98 0.40 0.33 16 12 O -0.64 -1.74 8.52 -144.35 -1.23 -2.97 16 13 Si 1.31 -0.90 8.45 68.60 0.58 -0.32 16 14 C -0.51 1.11 8.50 113.37 0.96 2.07 16 15 C -0.52 -0.42 8.50 113.37 0.96 0.54 16 16 C -0.38 -0.53 0.53 -10.79 -0.01 -0.53 16 17 C -0.13 -0.23 7.85 71.98 0.56 0.34 16 18 C -0.14 0.00 7.85 71.98 0.56 0.56 16 19 C -0.14 -0.49 7.85 71.98 0.56 0.07 16 20 C -0.13 -0.55 10.91 23.66 0.26 -0.29 16 21 C -0.06 -0.12 6.20 24.76 0.15 0.03 16 22 C -0.03 0.09 2.98 71.24 0.21 0.30 16 23 O -0.54 0.96 12.86 -148.98 -1.92 -0.96 16 24 Si 0.99 -2.00 27.37 68.60 1.88 -0.12 16 25 H -0.26 0.00 7.11 99.48 0.71 0.71 16 26 H -0.25 0.17 7.11 99.48 0.71 0.88 16 27 H -0.26 -0.12 7.11 99.48 0.71 0.59 16 28 O -0.17 -0.62 8.88 4.72 0.04 -0.58 16 29 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 30 H 0.10 -0.04 8.08 -2.39 -0.02 -0.06 16 31 H 0.10 0.01 8.08 -2.39 -0.02 -0.01 16 32 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.10 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 36 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 37 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 38 H 0.09 -0.61 7.21 -2.39 -0.02 -0.63 16 39 H 0.06 -0.08 7.21 -2.39 -0.02 -0.09 16 40 H 0.07 -0.27 7.48 -2.39 -0.02 -0.29 16 41 H 0.08 -0.21 7.79 -2.39 -0.02 -0.23 16 42 H 0.07 -0.14 7.79 -2.38 -0.02 -0.16 16 43 H 0.06 0.19 7.79 -2.39 -0.02 0.18 16 44 H 0.08 -0.04 7.79 -2.39 -0.02 -0.05 16 45 H 0.07 -0.01 7.48 -2.39 -0.02 -0.02 16 46 H 0.06 -0.03 7.79 -2.39 -0.02 -0.05 16 47 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 48 H 0.05 0.14 7.97 -2.38 -0.02 0.12 16 49 H 0.06 -0.07 7.79 -2.38 -0.02 -0.09 16 50 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 51 H 0.07 -0.14 7.79 -2.39 -0.02 -0.16 16 52 H 0.05 0.27 7.96 -2.39 -0.02 0.26 16 53 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 54 H 0.06 0.16 7.79 -2.39 -0.02 0.14 16 55 H 0.17 0.41 8.06 -2.91 -0.02 0.38 16 56 H 0.16 -0.98 7.96 -2.39 -0.02 -1.00 16 57 H 0.39 -2.95 8.70 -74.06 -0.64 -3.59 16 Total: 0.00 -18.10 469.14 5.90 -12.20 By element: Atomic # 1 Polarization: -5.26 SS G_CDS: 0.94 Total: -4.32 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 7.24 Total: 10.06 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -4.75 Total: -17.50 kcal Atomic # 14 Polarization: -2.90 SS G_CDS: 2.46 Total: -0.44 kcal Total: -18.10 5.90 -12.20 kcal The number of atoms in the molecule is 57 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13308380_16896872.mol2 57 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -234.089 kcal (2) G-P(sol) polarization free energy of solvation -18.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds