Wall clock time and date at job start Sat Mar 6 2021 02:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42888 * 113.99926 * 2 1 4 4 C 1.52997 * 112.85201 * 294.12919 * 3 2 1 5 5 F 1.39902 * 109.47429 * 195.75065 * 4 3 2 6 6 F 1.39899 * 109.47131 * 315.74989 * 4 3 2 7 7 F 1.39896 * 109.47137 * 75.75487 * 4 3 2 8 8 C 1.53782 * 113.61240 * 162.82492 * 3 2 1 9 9 C 1.53783 * 87.08089 * 270.88384 * 8 3 2 10 10 H 1.09005 * 113.68834 * 220.00730 * 9 8 3 11 11 C 1.53001 * 113.61429 * 89.11875 * 9 8 3 12 12 O 1.45192 * 109.47356 * 87.50268 * 11 9 8 13 13 C 1.34772 * 117.00192 * 179.97438 * 12 11 9 14 14 O 1.21532 * 119.99719 * 359.97438 * 13 12 11 15 15 C 1.47233 * 120.00278 * 179.97438 * 13 12 11 16 16 C 1.36496 * 127.19936 * 179.97438 * 15 13 12 17 17 C 1.50698 * 125.80995 * 0.02562 * 16 15 13 18 18 O 1.33627 * 108.37813 * 180.02562 * 16 15 13 19 19 C 1.34217 * 110.92796 * 359.97438 * 18 16 15 20 20 C 1.50699 * 125.42559 * 179.97438 * 19 18 16 21 21 O 1.42907 * 109.46756 * 120.02869 * 20 19 18 22 22 Si 1.86308 * 109.47429 * 0.02986 * 20 19 18 23 23 C 1.34156 * 109.14261 * 0.26429 * 19 18 16 24 24 C 1.53778 * 113.61700 * 65.32952 * 3 2 1 25 25 H 1.09003 * 109.46316 * 303.09224 * 1 2 3 26 26 H 1.08996 * 109.47259 * 63.09008 * 1 2 3 27 27 H 1.08998 * 109.47112 * 183.09304 * 1 2 3 28 28 H 1.09002 * 113.61790 * 156.33333 * 8 3 2 29 29 H 1.09001 * 113.61815 * 25.43401 * 8 3 2 30 30 H 1.09003 * 109.46778 * 327.50118 * 11 9 8 31 31 H 1.08998 * 109.46510 * 207.50249 * 11 9 8 32 32 H 1.09001 * 109.46664 * 179.97438 * 17 16 15 33 33 H 1.08993 * 109.46990 * 299.97353 * 17 16 15 34 34 H 1.09003 * 109.46847 * 59.97975 * 17 16 15 35 35 H 1.08998 * 109.47117 * 240.02744 * 20 19 18 36 36 H 0.96701 * 113.99804 * 299.99488 * 21 20 19 37 37 H 1.48494 * 109.99652 * 58.67686 * 22 20 19 38 38 H 1.48499 * 109.99942 * 180.02562 * 22 20 19 39 39 H 1.08002 * 127.02354 * 179.73902 * 23 19 18 40 40 H 1.09000 * 113.61532 * 334.56326 * 24 3 2 41 41 H 1.09004 * 113.61765 * 203.66227 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7254 2.0826 -1.2867 5 9 2.5970 3.1733 -1.3754 6 9 1.9148 1.2435 -2.3900 7 9 0.4040 2.5417 -1.2713 8 6 3.4906 1.3205 0.4161 9 6 3.0004 1.4807 1.8649 10 1 3.5975 2.1761 2.4549 11 6 2.7581 0.1502 2.5805 12 8 3.9935 -0.3003 3.1961 13 6 3.9511 -1.4656 3.8717 14 8 2.9098 -2.0881 3.9447 15 6 5.1661 -1.9847 4.5213 16 6 5.2893 -3.1397 5.2382 17 6 4.1867 -4.1301 5.5111 18 8 6.5541 -3.2428 5.6569 19 6 7.2830 -2.1944 5.2433 20 6 8.7466 -1.9800 5.5312 21 8 9.4690 -1.9110 4.3001 22 14 9.3930 -3.3981 6.5520 23 6 6.4994 -1.3646 4.5382 24 6 1.7236 2.1074 1.2804 25 1 -0.3632 0.5611 0.8610 26 1 -0.3633 0.4651 -0.9163 27 1 -0.3633 -1.0261 0.0554 28 1 4.0403 2.1847 0.0430 29 1 4.0059 0.3780 0.2311 30 1 2.4191 -0.5936 1.8595 31 1 1.9971 0.2846 3.3491 32 1 4.5780 -4.9541 6.1078 33 1 3.3820 -3.6368 6.0561 34 1 3.8028 -4.5157 4.5666 35 1 8.8760 -1.0478 6.0811 36 1 9.3988 -2.7085 3.7577 37 1 9.1933 -4.6784 5.8267 38 1 10.8354 -3.1982 6.8433 39 1 6.7890 -0.4326 4.0757 40 1 0.8122 1.8001 1.7932 41 1 1.7900 3.1868 1.1436 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13308380_17321610.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 02:48:27 Heat of formation + Delta-G solvation = -252.888988 kcal Electronic energy + Delta-G solvation = -32011.341054 eV Core-core repulsion = 26832.963701 eV Total energy + Delta-G solvation = -5178.377353 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.111 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.27766 -48.80720 -48.75104 -43.86908 -41.75710 -40.89186 -38.18411 -37.79829 -36.89431 -34.32527 -33.22691 -30.84588 -29.51479 -28.26818 -27.60554 -26.80206 -25.95813 -24.54196 -23.36049 -22.59366 -20.92972 -20.44589 -19.81261 -19.56813 -19.25679 -19.07627 -18.44068 -17.92974 -17.45962 -17.39623 -17.14671 -16.74084 -16.50140 -15.98333 -15.86874 -15.68728 -15.67334 -15.61404 -15.24975 -15.13541 -14.93783 -14.86765 -14.70059 -14.39071 -14.26752 -14.16156 -13.96546 -13.88411 -13.73666 -13.32564 -13.17068 -12.97653 -12.87837 -12.77219 -12.39299 -12.17786 -12.06663 -11.79126 -11.69624 -11.60914 -11.06127 -10.83405 -10.76707 -9.70322 -4.92261 -0.01479 0.71560 1.17405 1.28115 1.50565 1.58920 1.70887 1.89145 1.93459 2.06413 2.53869 2.60134 2.85890 3.12994 3.25697 3.27560 3.36341 3.43417 3.59901 3.66818 3.83332 4.05648 4.20672 4.21898 4.24517 4.33750 4.37441 4.43273 4.48234 4.50751 4.56973 4.58608 4.61140 4.66621 4.70638 4.76379 4.80329 4.98497 5.09355 5.14214 5.31428 5.68644 5.80285 6.34721 6.63049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.348 6.348 3 C 0.033 3.967 4 C 0.434 3.566 5 F -0.175 7.175 6 F -0.189 7.189 7 F -0.184 7.184 8 C -0.113 4.113 9 C -0.092 4.092 10 H 0.122 0.878 11 C 0.078 3.922 12 O -0.350 6.350 13 C 0.541 3.459 14 O -0.529 6.529 15 C -0.263 4.263 16 C 0.108 3.892 17 C -0.082 4.082 18 O -0.163 6.163 19 C -0.058 4.058 20 C -0.035 4.035 21 O -0.534 6.534 22 Si 0.777 3.223 23 C -0.133 4.133 24 C -0.133 4.133 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.109 0.891 28 H 0.129 0.871 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.157 0.843 36 H 0.391 0.609 37 H -0.292 1.292 38 H -0.283 1.283 39 H 0.171 0.829 40 H 0.105 0.895 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.237 0.522 5.029 5.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.267 6.267 3 C -0.010 4.010 4 C 0.379 3.621 5 F -0.156 7.156 6 F -0.170 7.170 7 F -0.165 7.165 8 C -0.150 4.150 9 C -0.111 4.111 10 H 0.140 0.860 11 C 0.004 3.996 12 O -0.266 6.266 13 C 0.388 3.612 14 O -0.421 6.421 15 C -0.266 4.266 16 C 0.055 3.945 17 C -0.138 4.138 18 O -0.060 6.060 19 C -0.106 4.106 20 C -0.144 4.144 21 O -0.343 6.343 22 Si 0.680 3.320 23 C -0.153 4.153 24 C -0.170 4.170 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.128 0.872 28 H 0.147 0.853 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.174 0.826 36 H 0.241 0.759 37 H -0.219 1.219 38 H -0.209 1.209 39 H 0.189 0.811 40 H 0.123 0.877 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.375 -0.076 5.421 5.434 hybrid contribution -0.583 0.267 -2.134 2.228 sum -0.207 0.191 3.287 3.299 Atomic orbital electron populations 1.23271 0.78708 1.05196 1.01829 1.88081 1.22133 1.22589 1.93852 1.24226 1.00662 0.86276 0.89830 1.21474 0.74182 0.78714 0.87706 1.93174 1.69478 1.56333 1.96627 1.93187 1.94853 1.71442 1.57521 1.93181 1.36720 1.89786 1.96844 1.23348 0.90519 1.05772 0.95369 1.22049 0.98209 0.95654 0.95153 0.85976 1.23099 0.83469 0.96110 0.96885 1.86499 1.39557 1.37425 1.63123 1.20021 0.87097 0.78680 0.75371 1.90843 1.32608 1.58936 1.59704 1.20331 0.94091 1.00219 1.11949 1.23298 0.84072 0.95290 0.91887 1.20728 0.91855 0.96310 1.04898 1.83718 1.19152 1.42055 1.61090 1.22864 0.96008 0.88019 1.03679 1.24588 0.82959 1.14511 0.92351 1.86650 1.71276 1.44336 1.32025 0.93520 0.79606 0.72731 0.86143 1.22771 0.89755 1.01521 1.01204 1.23646 0.99664 1.01672 0.92031 0.91128 0.93453 0.87230 0.85262 0.89390 0.90223 0.90192 0.87560 0.87873 0.88452 0.82555 0.75939 1.21860 1.20933 0.81129 0.87702 0.85295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 10.33 113.37 1.17 1.16 16 2 O -0.35 -0.79 8.36 -148.98 -1.25 -2.04 16 3 C 0.03 -0.01 0.84 -10.27 -0.01 -0.02 16 4 C 0.43 1.20 2.52 71.98 0.18 1.38 16 5 F -0.17 -0.40 15.82 44.97 0.71 0.31 16 6 F -0.19 -1.33 17.11 44.97 0.77 -0.56 16 7 F -0.18 -0.57 15.34 44.97 0.69 0.12 16 8 C -0.11 0.24 6.89 31.12 0.21 0.46 16 9 C -0.09 0.35 4.21 -10.27 -0.04 0.31 16 10 H 0.12 -0.77 8.14 -2.38 -0.02 -0.79 16 11 C 0.08 0.07 5.06 71.98 0.36 0.44 16 12 O -0.35 -1.61 10.13 -56.83 -0.58 -2.18 16 13 C 0.54 3.83 7.95 70.19 0.56 4.38 16 14 O -0.53 -5.40 15.46 19.73 0.30 -5.10 16 15 C -0.26 -1.23 6.32 -19.01 -0.12 -1.35 16 16 C 0.11 0.21 7.38 25.28 0.19 0.40 16 17 C -0.08 0.21 9.14 71.24 0.65 0.86 16 18 O -0.16 -0.15 8.88 4.68 0.04 -0.11 16 19 C -0.06 0.00 6.20 24.75 0.15 0.15 16 20 C -0.04 0.11 2.97 71.24 0.21 0.32 16 21 O -0.53 0.29 12.87 -148.98 -1.92 -1.63 16 22 Si 0.78 -2.57 32.09 68.60 2.20 -0.37 16 23 C -0.13 -0.28 10.91 23.65 0.26 -0.02 16 24 C -0.13 0.70 6.52 31.12 0.20 0.91 16 25 H 0.07 -0.35 6.60 -2.39 -0.02 -0.36 16 26 H 0.05 -0.01 6.56 -2.39 -0.02 -0.03 16 27 H 0.11 -0.38 8.14 -2.39 -0.02 -0.40 16 28 H 0.13 -0.62 7.03 -2.39 -0.02 -0.63 16 29 H 0.09 0.01 8.10 -2.39 -0.02 -0.01 16 30 H 0.08 0.30 6.12 -2.39 -0.01 0.29 16 31 H 0.08 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.11 -0.75 8.14 -2.39 -0.02 -0.77 16 33 H 0.10 -0.28 8.08 -2.39 -0.02 -0.30 16 34 H 0.10 -0.16 8.08 -2.39 -0.02 -0.18 16 35 H 0.16 -1.08 7.96 -2.39 -0.02 -1.10 16 36 H 0.39 -2.16 8.70 -74.06 -0.64 -2.81 16 37 H -0.29 -0.79 7.11 99.48 0.71 -0.09 16 38 H -0.28 -0.71 7.11 99.48 0.71 0.00 16 39 H 0.17 0.03 8.06 -2.91 -0.02 0.01 16 40 H 0.10 -0.73 6.64 -2.39 -0.02 -0.74 16 41 H 0.13 -1.03 8.04 -2.38 -0.02 -1.05 16 Total: 0.00 -16.61 360.04 5.45 -11.16 By element: Atomic # 1 Polarization: -9.48 SS G_CDS: 0.49 Total: -8.99 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 3.98 Total: 9.38 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -3.39 Total: -11.05 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 2.17 Total: -0.13 kcal Atomic # 14 Polarization: -2.57 SS G_CDS: 2.20 Total: -0.37 kcal Total: -16.61 5.45 -11.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13308380_17321610.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -241.730 kcal (2) G-P(sol) polarization free energy of solvation -16.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds