Wall clock time and date at job start Sat Mar 6 2021 03:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36496 * 125.80717 * 2 1 4 4 C 1.47231 * 127.20133 * 359.97438 * 3 2 1 5 5 O 1.21532 * 120.00209 * 0.02562 * 4 3 2 6 6 O 1.34774 * 119.99836 * 180.02562 * 4 3 2 7 7 C 1.45194 * 117.00102 * 180.02562 * 6 4 3 8 8 Si 1.86300 * 109.47111 * 74.99758 * 7 6 4 9 9 C 1.86307 * 109.46831 * 60.00348 * 8 7 6 10 10 C 1.86304 * 109.47197 * 179.97438 * 8 7 6 11 11 C 1.86295 * 109.47300 * 300.00515 * 8 7 6 12 12 C 1.47058 * 105.59677 * 179.97438 * 3 2 1 13 13 C 1.34164 * 105.94897 * 359.97438 * 12 3 2 14 14 C 1.50704 * 125.42657 * 179.97438 * 13 12 3 15 15 O 1.42900 * 109.47058 * 299.99952 * 14 13 12 16 16 Si 1.86295 * 109.46899 * 180.02562 * 14 13 12 17 17 H 1.48501 * 109.47379 * 60.00179 * 16 14 13 18 18 H 1.48500 * 109.46995 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47167 * 300.00334 * 16 14 13 20 20 O 1.33628 * 125.80853 * 179.97438 * 2 1 3 21 21 H 1.08999 * 109.47161 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47120 * 300.00140 * 1 2 3 23 23 H 1.08995 * 109.47555 * 60.00124 * 1 2 3 24 24 H 1.09004 * 109.47485 * 195.00259 * 7 6 4 25 25 H 1.09005 * 109.47076 * 315.00084 * 7 6 4 26 26 H 1.09004 * 109.46961 * 59.99991 * 9 8 7 27 27 H 1.08997 * 109.47033 * 179.97438 * 9 8 7 28 28 H 1.09001 * 109.47201 * 299.99954 * 9 8 7 29 29 H 1.09005 * 109.46898 * 60.00382 * 10 8 7 30 30 H 1.08995 * 109.46898 * 180.02562 * 10 8 7 31 31 H 1.08997 * 109.47189 * 300.00671 * 10 8 7 32 32 H 1.08997 * 109.47632 * 59.99642 * 11 8 7 33 33 H 1.09007 * 109.46898 * 179.97438 * 11 8 7 34 34 H 1.08998 * 109.47166 * 299.99371 * 11 8 7 35 35 H 1.07999 * 127.02824 * 180.25994 * 12 3 2 36 36 H 1.08999 * 109.47033 * 59.99830 * 14 13 12 37 37 H 0.96697 * 114.00189 * 300.00072 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.1070 0.0000 4 6 1.8753 2.5150 -0.0005 5 8 0.6912 2.7886 -0.0006 6 8 2.7946 3.5005 -0.0010 7 6 2.2983 4.8650 -0.0009 8 14 1.6594 5.2933 1.6959 9 6 3.0394 5.1344 2.9374 10 6 1.0232 7.0444 1.6962 11 6 0.2776 4.1297 2.1512 12 6 3.6856 0.5989 0.0006 13 6 3.5859 -0.7390 0.0015 14 6 4.7456 -1.7014 0.0019 15 8 5.5421 -1.4880 -1.1652 16 14 4.1017 -3.4496 0.0024 17 1 3.2738 -3.6726 -1.2101 18 1 5.2445 -4.3979 0.0021 19 1 3.2737 -3.6717 1.2148 20 8 2.2888 -1.0837 0.0005 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 3.1068 5.5458 -0.2673 25 1 1.4909 4.9580 -0.7273 26 1 3.8479 5.8153 2.6710 27 1 2.6658 5.3855 3.9301 28 1 3.4121 4.1101 2.9373 29 1 0.2159 7.1378 0.9698 30 1 0.6499 7.2950 2.6891 31 1 1.8320 7.7248 1.4300 32 1 0.6501 3.1054 2.1511 33 1 -0.0959 4.3801 3.1442 34 1 -0.5299 4.2227 1.4249 35 1 4.5938 1.1833 0.0047 36 1 5.3535 -1.5374 0.8916 37 1 5.0646 -1.6168 -1.9962 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13308380_4858416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:09:55 Heat of formation + Delta-G solvation = -131.010854 kcal Electronic energy + Delta-G solvation = -19476.698779 eV Core-core repulsion = 16345.282853 eV Total energy + Delta-G solvation = -3131.415926 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.88897 -41.23239 -38.03867 -37.41792 -34.33713 -33.21866 -29.85628 -29.50003 -28.42560 -28.37116 -28.13051 -25.82114 -24.35784 -22.55393 -20.67970 -19.05088 -18.38254 -17.94653 -17.52528 -17.21359 -16.83074 -15.87769 -15.83581 -14.90659 -14.55900 -14.48201 -14.33100 -14.07883 -14.04269 -13.91076 -13.88967 -13.79674 -13.38009 -13.24228 -13.06348 -13.02811 -12.91899 -12.80791 -12.54138 -12.22861 -12.07854 -11.64543 -11.02683 -10.86047 -10.77354 -10.61750 -10.38418 -9.69413 -0.00500 0.71553 1.05597 1.25811 1.46623 1.52346 1.58137 1.70718 1.87021 1.90748 1.95501 2.11461 2.56281 3.17724 3.44993 3.66025 3.81115 4.05906 4.24153 4.37400 4.49115 4.53355 4.58556 4.67570 4.69421 4.75448 4.77213 4.80318 4.81321 4.82292 4.87894 5.05363 5.13847 5.31178 5.51384 5.59607 5.64029 5.79361 6.54838 6.71599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.100 3.900 3 C -0.260 4.260 4 C 0.522 3.478 5 O -0.507 6.507 6 O -0.337 6.337 7 C -0.257 4.257 8 Si 1.056 2.944 9 C -0.456 4.456 10 C -0.450 4.450 11 C -0.452 4.452 12 C -0.135 4.135 13 C -0.064 4.064 14 C -0.035 4.035 15 O -0.538 6.538 16 Si 0.991 3.009 17 H -0.261 1.261 18 H -0.253 1.253 19 H -0.262 1.262 20 O -0.173 6.173 21 H 0.101 0.899 22 H 0.101 0.899 23 H 0.102 0.898 24 H 0.129 0.871 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.173 0.827 36 H 0.154 0.846 37 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.522 -0.180 0.398 0.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.047 3.953 3 C -0.263 4.263 4 C 0.369 3.631 5 O -0.399 6.399 6 O -0.253 6.253 7 C -0.374 4.374 8 Si 1.249 2.751 9 C -0.563 4.563 10 C -0.558 4.558 11 C -0.558 4.558 12 C -0.154 4.154 13 C -0.111 4.111 14 C -0.145 4.145 15 O -0.346 6.346 16 Si 0.813 3.187 17 H -0.185 1.185 18 H -0.177 1.177 19 H -0.186 1.186 20 O -0.070 6.070 21 H 0.120 0.880 22 H 0.119 0.881 23 H 0.120 0.880 24 H 0.147 0.853 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.191 0.809 36 H 0.172 0.828 37 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 0.273 -1.112 0.777 1.384 hybrid contribution -0.329 0.679 -0.573 0.947 sum -0.056 -0.433 0.204 0.482 Atomic orbital electron populations 1.20715 0.81807 1.05662 1.05565 1.23268 0.94899 0.82559 0.94570 1.20402 0.94907 0.90791 1.20163 1.20038 0.84026 0.85702 0.73376 1.90828 1.18039 1.84310 1.46696 1.86477 1.38616 1.16456 1.83705 1.28743 1.06795 0.80329 1.21541 0.78837 0.65799 0.67119 0.63391 1.26178 1.13705 1.04480 1.11980 1.26060 1.06851 1.17730 1.05185 1.26472 1.14417 1.10142 1.04741 1.22808 0.96570 0.93428 1.02589 1.23095 0.82766 0.96107 1.09170 1.24498 0.89975 1.06492 0.93505 1.86553 1.38677 1.93298 1.16039 0.85041 0.78906 0.73597 0.81179 1.18484 1.17658 1.18636 1.83709 1.17103 1.34820 1.71397 0.88041 0.88055 0.87999 0.85304 0.90520 0.90294 0.90673 0.92018 0.90976 0.90389 0.90096 0.93036 0.91552 0.91462 0.80933 0.82820 0.75658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.08 9.14 71.23 0.65 0.73 16 2 C 0.10 0.38 7.38 25.28 0.19 0.57 16 3 C -0.26 -1.57 6.32 -19.01 -0.12 -1.69 16 4 C 0.52 3.89 6.73 70.19 0.47 4.36 16 5 O -0.51 -4.44 11.37 19.73 0.22 -4.22 16 6 O -0.34 -1.94 9.83 -56.85 -0.56 -2.49 16 7 C -0.26 -0.17 5.40 113.37 0.61 0.44 16 8 Si 1.06 -2.23 12.12 68.60 0.83 -1.40 16 9 C -0.46 0.45 8.65 113.37 0.98 1.43 16 10 C -0.45 1.42 8.65 113.37 0.98 2.40 16 11 C -0.45 -1.41 7.10 113.37 0.80 -0.61 16 12 C -0.13 -0.47 10.91 23.66 0.26 -0.22 16 13 C -0.06 -0.10 6.20 24.76 0.15 0.05 16 14 C -0.03 0.09 2.98 71.24 0.21 0.31 16 15 O -0.54 1.08 12.86 -148.98 -1.92 -0.83 16 16 Si 0.99 -2.04 27.37 68.60 1.88 -0.16 16 17 H -0.26 0.05 7.11 99.48 0.71 0.75 16 18 H -0.25 0.17 7.11 99.48 0.71 0.87 16 19 H -0.26 -0.14 7.11 99.48 0.71 0.57 16 20 O -0.17 -0.57 8.88 4.72 0.04 -0.53 16 21 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 22 H 0.10 -0.08 8.08 -2.39 -0.02 -0.10 16 23 H 0.10 -0.10 8.08 -2.39 -0.02 -0.12 16 24 H 0.13 -0.49 7.96 -2.39 -0.02 -0.51 16 25 H 0.08 0.12 7.52 -2.38 -0.02 0.10 16 26 H 0.08 -0.19 7.96 -2.39 -0.02 -0.21 16 27 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 28 H 0.06 0.07 7.96 -2.39 -0.02 0.05 16 29 H 0.07 -0.20 7.96 -2.38 -0.02 -0.21 16 30 H 0.08 -0.25 7.96 -2.39 -0.02 -0.27 16 31 H 0.08 -0.38 7.96 -2.39 -0.02 -0.40 16 32 H 0.05 0.31 6.28 -2.39 -0.01 0.30 16 33 H 0.07 0.11 7.96 -2.38 -0.02 0.09 16 34 H 0.07 0.34 7.42 -2.39 -0.02 0.33 16 35 H 0.17 0.24 8.06 -2.91 -0.02 0.22 16 36 H 0.15 -0.96 7.96 -2.39 -0.02 -0.98 16 37 H 0.39 -3.13 8.70 -74.06 -0.64 -3.77 16 Total: 0.00 -12.69 317.16 6.87 -5.82 By element: Atomic # 1 Polarization: -5.14 SS G_CDS: 1.17 Total: -3.97 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 5.19 Total: 7.77 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -2.21 Total: -8.07 kcal Atomic # 14 Polarization: -4.26 SS G_CDS: 2.71 Total: -1.55 kcal Total: -12.69 6.87 -5.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13308380_4858416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.192 kcal (2) G-P(sol) polarization free energy of solvation -12.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds