Wall clock time and date at job start Sat Mar 6 2021 04:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36500 * 125.80198 * 2 1 4 4 C 1.47227 * 127.20426 * 0.02562 * 3 2 1 5 5 O 1.21535 * 119.99843 * 359.71817 * 4 3 2 6 6 O 1.34771 * 120.00070 * 179.71046 * 4 3 2 7 7 C 1.45202 * 117.00135 * 179.97438 * 6 4 3 8 8 C 1.50698 * 109.47391 * 179.97438 * 7 6 4 9 9 C 1.38228 * 120.00200 * 270.28656 * 8 7 6 10 10 C 1.38238 * 120.00120 * 180.23540 * 9 8 7 11 11 C 1.38234 * 119.99675 * 359.47825 * 10 9 8 12 12 Si 1.86803 * 119.99940 * 180.28096 * 11 10 9 13 13 C 1.86301 * 109.46852 * 90.00443 * 12 11 10 14 14 C 1.86305 * 109.47191 * 210.00145 * 12 11 10 15 15 C 1.86296 * 109.47316 * 330.00190 * 12 11 10 16 16 C 1.38234 * 120.00240 * 0.26327 * 11 10 9 17 17 C 1.38234 * 119.99739 * 90.00021 * 8 7 6 18 18 C 1.47067 * 105.59442 * 179.75601 * 3 2 1 19 19 C 1.34159 * 105.94697 * 0.23457 * 18 3 2 20 20 C 1.50700 * 125.42405 * 179.97438 * 19 18 3 21 21 O 1.42907 * 109.47208 * 299.99988 * 20 19 18 22 22 Si 1.86298 * 109.47124 * 180.02562 * 20 19 18 23 23 H 1.48503 * 109.47058 * 59.99933 * 22 20 19 24 24 H 1.48504 * 109.47253 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47062 * 300.00353 * 22 20 19 26 26 O 1.33627 * 125.81339 * 180.16257 * 2 1 3 27 27 H 1.09001 * 109.47011 * 90.01137 * 1 2 3 28 28 H 1.09010 * 109.46774 * 210.00038 * 1 2 3 29 29 H 1.08991 * 109.47955 * 330.00264 * 1 2 3 30 30 H 1.09007 * 109.46820 * 60.00183 * 7 6 4 31 31 H 1.08998 * 109.47701 * 300.00573 * 7 6 4 32 32 H 1.08004 * 120.00256 * 359.97438 * 9 8 7 33 33 H 1.08002 * 120.00519 * 179.76445 * 10 9 8 34 34 H 1.08992 * 109.47179 * 60.00150 * 13 12 11 35 35 H 1.09007 * 109.47049 * 179.97438 * 13 12 11 36 36 H 1.08994 * 109.47120 * 299.99515 * 13 12 11 37 37 H 1.09002 * 109.46698 * 60.00064 * 14 12 11 38 38 H 1.08998 * 109.47017 * 180.02562 * 14 12 11 39 39 H 1.09004 * 109.46851 * 300.00496 * 14 12 11 40 40 H 1.09006 * 109.46796 * 60.00075 * 15 12 11 41 41 H 1.08998 * 109.47288 * 179.97438 * 15 12 11 42 42 H 1.09002 * 109.47253 * 300.00352 * 15 12 11 43 43 H 1.07997 * 120.00460 * 180.02562 * 16 11 10 44 44 H 1.08001 * 120.00310 * 0.02562 * 17 8 7 45 45 H 1.07995 * 127.02466 * 180.19951 * 18 3 2 46 46 H 1.09003 * 109.47346 * 59.99789 * 20 19 18 47 47 H 0.96700 * 113.99752 * 300.00164 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.1071 0.0000 4 6 1.8752 2.5151 0.0005 5 8 0.6910 2.7886 -0.0042 6 8 2.7944 3.5006 0.0063 7 6 2.2980 4.8651 0.0059 8 6 3.4613 5.8230 0.0135 9 6 3.9925 6.2558 1.2140 10 6 5.0565 7.1383 1.2210 11 6 5.5963 7.5795 0.0273 12 14 7.0392 8.7659 0.0367 13 6 8.6343 7.8034 0.0426 14 6 6.9686 9.8416 -1.4828 15 6 6.9536 9.8358 1.5594 16 6 5.0686 7.1425 -1.1733 17 6 4.0011 6.2642 -1.1802 18 6 3.6856 0.5991 0.0060 19 6 3.5860 -0.7388 0.0037 20 6 4.7457 -1.7011 0.0075 21 8 5.5476 -1.4853 -1.1555 22 14 4.1020 -3.4494 0.0015 23 1 3.2798 -3.6699 -1.2153 24 1 5.2449 -4.3977 0.0046 25 1 3.2684 -3.6740 1.2096 26 8 2.2889 -1.0836 -0.0031 27 1 -0.3633 -0.0002 -1.0277 28 1 -0.3633 -0.8901 0.5139 29 1 -0.3635 0.8899 0.5137 30 1 1.6866 5.0296 0.8933 31 1 1.6951 5.0322 -0.8866 32 1 3.5735 5.9078 2.1467 33 1 5.4691 7.4795 2.1590 34 1 8.6843 7.1776 -0.8483 35 1 9.4763 8.4957 0.0476 36 1 8.6757 7.1742 0.9316 37 1 6.0352 10.4046 -1.4863 38 1 7.8107 10.5335 -1.4776 39 1 7.0186 9.2155 -2.3738 40 1 6.9950 9.2063 2.4484 41 1 7.7958 10.5277 1.5651 42 1 6.0203 10.3988 1.5559 43 1 5.4905 7.4869 -2.1059 44 1 3.5888 5.9228 -2.1182 45 1 4.5937 1.1836 0.0107 46 1 5.3495 -1.5389 0.9004 47 1 5.0740 -1.6124 -1.9889 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_13308380_9435856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:30:39 Heat of formation + Delta-G solvation = -126.164004 kcal Electronic energy + Delta-G solvation = -27279.334619 eV Core-core repulsion = 23324.149068 eV Total energy + Delta-G solvation = -3955.185550 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.82701 -41.21770 -39.91988 -38.11205 -37.39108 -34.28547 -33.25072 -32.91965 -31.89263 -29.66994 -29.53023 -28.45638 -28.41545 -27.61292 -25.89157 -24.44694 -23.48780 -22.63754 -21.99768 -20.63373 -19.04332 -18.41358 -17.91314 -17.85254 -17.25908 -17.19687 -16.62322 -16.00491 -15.98998 -15.77762 -15.65857 -14.84881 -14.46406 -14.39515 -14.38000 -14.21469 -14.11820 -14.07054 -14.01410 -13.90735 -13.83613 -13.76365 -13.47403 -13.27333 -13.20397 -13.10933 -13.00859 -12.88533 -12.67025 -12.23981 -12.10048 -12.05444 -11.58760 -11.54603 -11.04272 -10.95313 -10.91708 -10.84471 -10.67382 -9.78719 -9.69658 -9.65698 0.07946 0.12733 0.54016 0.76776 0.98360 1.27458 1.41059 1.61464 1.69025 1.76918 1.83895 1.86236 2.02851 2.04467 2.53333 2.96097 3.12787 3.34800 3.63076 3.70349 3.82560 3.89760 4.07555 4.11946 4.24856 4.27061 4.35946 4.42860 4.46825 4.49938 4.59578 4.66488 4.69447 4.70548 4.72701 4.74360 4.75900 4.75991 4.76562 4.99176 5.01231 5.14655 5.19233 5.35137 5.43005 5.48351 5.48969 5.53909 5.61210 5.61810 5.84871 6.10233 6.32292 6.80348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.106 3.894 3 C -0.239 4.239 4 C 0.543 3.457 5 O -0.510 6.510 6 O -0.342 6.342 7 C 0.110 3.890 8 C -0.090 4.090 9 C -0.105 4.105 10 C -0.092 4.092 11 C -0.360 4.360 12 Si 1.060 2.940 13 C -0.449 4.449 14 C -0.450 4.450 15 C -0.450 4.450 16 C -0.092 4.092 17 C -0.105 4.105 18 C -0.122 4.122 19 C -0.065 4.065 20 C -0.039 4.039 21 O -0.528 6.528 22 Si 0.957 3.043 23 H -0.248 1.248 24 H -0.244 1.244 25 H -0.246 1.246 26 O -0.168 6.168 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.167 0.833 46 H 0.138 0.862 47 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.292 0.011 -0.068 1.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 C -0.242 4.242 4 C 0.389 3.611 5 O -0.400 6.400 6 O -0.259 6.259 7 C 0.037 3.963 8 C -0.091 4.091 9 C -0.123 4.123 10 C -0.110 4.110 11 C -0.402 4.402 12 Si 1.251 2.749 13 C -0.557 4.557 14 C -0.557 4.557 15 C -0.557 4.557 16 C -0.109 4.109 17 C -0.123 4.123 18 C -0.141 4.141 19 C -0.113 4.113 20 C -0.150 4.150 21 O -0.333 6.333 22 Si 0.776 3.224 23 H -0.171 1.171 24 H -0.167 1.167 25 H -0.169 1.169 26 O -0.065 6.065 27 H 0.114 0.886 28 H 0.105 0.895 29 H 0.129 0.871 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.142 0.858 44 H 0.139 0.861 45 H 0.184 0.816 46 H 0.155 0.845 47 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 0.965 -0.939 0.372 1.396 hybrid contribution -0.456 0.606 -0.384 0.850 sum 0.509 -0.333 -0.012 0.608 Atomic orbital electron populations 1.20765 0.83096 1.05717 1.05057 1.22907 0.94067 0.82722 0.95019 1.20195 0.94142 0.90541 1.19316 1.19860 0.83650 0.85112 0.72463 1.90844 1.17877 1.84382 1.46907 1.86640 1.39301 1.15940 1.84045 1.21879 0.94221 0.76596 1.03612 1.19473 0.97569 0.97891 0.94125 1.21159 0.96539 0.97461 0.97172 1.21081 0.95420 0.96173 0.98287 1.27493 1.10718 1.07793 0.94166 0.78186 0.64192 0.65140 0.67338 1.26121 1.16005 1.08857 1.04684 1.26136 1.04697 1.09882 1.15023 1.26136 1.04712 1.09826 1.15067 1.21081 0.95429 0.96213 0.98226 1.21161 0.96456 0.97458 0.97246 1.22666 0.96613 0.92984 1.01870 1.22739 0.82637 0.95896 1.10029 1.24392 0.90279 1.07322 0.92961 1.86583 1.38083 1.93331 1.15337 0.85531 0.80134 0.73954 0.82746 1.17148 1.16703 1.16936 1.83692 1.16720 1.34738 1.71398 0.88571 0.89549 0.87092 0.90077 0.90069 0.86096 0.85844 0.91133 0.91020 0.91138 0.91049 0.90925 0.91153 0.91157 0.90924 0.91047 0.85840 0.86093 0.81580 0.84481 0.77068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.04 9.89 36.00 0.36 0.40 16 2 C 0.11 0.19 7.38 -34.94 -0.26 -0.07 16 3 C -0.24 -0.70 6.32 -103.29 -0.65 -1.35 16 4 C 0.54 2.14 7.95 34.38 0.27 2.42 16 5 O -0.51 -2.65 14.64 -19.29 -0.28 -2.93 16 6 O -0.34 -1.20 10.12 -40.69 -0.41 -1.61 16 7 C 0.11 0.22 5.60 36.00 0.20 0.42 16 8 C -0.09 -0.17 5.52 -104.63 -0.58 -0.75 16 9 C -0.11 -0.15 9.70 -39.58 -0.38 -0.53 16 10 C -0.09 -0.05 9.29 -39.58 -0.37 -0.41 16 11 C -0.36 0.01 4.59 -39.58 -0.18 -0.17 16 12 Si 1.06 -2.61 12.32 -169.99 -2.09 -4.71 16 13 C -0.45 0.62 8.65 101.05 0.87 1.49 16 14 C -0.45 0.81 8.53 101.05 0.86 1.67 16 15 C -0.45 0.81 8.53 101.05 0.86 1.67 16 16 C -0.09 -0.05 9.29 -39.58 -0.37 -0.42 16 17 C -0.11 -0.15 9.70 -39.58 -0.38 -0.53 16 18 C -0.12 -0.22 10.91 -37.44 -0.41 -0.63 16 19 C -0.07 -0.06 6.20 -35.75 -0.22 -0.28 16 20 C -0.04 0.04 2.97 36.01 0.11 0.15 16 21 O -0.53 0.33 12.86 -35.23 -0.45 -0.13 16 22 Si 0.96 -0.89 27.37 -169.99 -4.65 -5.55 16 23 H -0.25 0.03 7.11 56.52 0.40 0.43 16 24 H -0.24 0.04 7.11 56.52 0.40 0.45 16 25 H -0.25 -0.05 7.11 56.52 0.40 0.36 16 26 O -0.17 -0.27 8.88 7.72 0.07 -0.21 16 27 H 0.10 -0.14 8.14 -51.93 -0.42 -0.56 16 28 H 0.09 -0.19 8.14 -51.92 -0.42 -0.61 16 29 H 0.11 0.05 6.49 -51.93 -0.34 -0.29 16 30 H 0.08 0.11 8.08 -51.93 -0.42 -0.31 16 31 H 0.08 0.11 8.08 -51.93 -0.42 -0.31 16 32 H 0.12 0.01 8.06 -52.48 -0.42 -0.41 16 33 H 0.12 -0.18 7.43 -52.49 -0.39 -0.57 16 34 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 35 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 36 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 37 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 38 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 39 H 0.07 -0.14 7.69 -51.93 -0.40 -0.53 16 40 H 0.07 -0.14 7.69 -51.93 -0.40 -0.54 16 41 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 42 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 43 H 0.12 -0.18 7.43 -52.49 -0.39 -0.57 16 44 H 0.12 0.02 8.06 -52.49 -0.42 -0.41 16 45 H 0.17 0.17 8.06 -52.49 -0.42 -0.25 16 46 H 0.14 -0.34 7.96 -51.93 -0.41 -0.76 16 47 H 0.38 -1.41 8.70 45.56 0.40 -1.02 16 LS Contribution 404.29 15.07 6.09 6.09 Total: 0.00 -6.94 404.29 -8.58 -15.52 By element: Atomic # 1 Polarization: -2.98 SS G_CDS: -6.58 Total: -9.56 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -0.27 Total: 3.08 kcal Atomic # 8 Polarization: -3.80 SS G_CDS: -1.08 Total: -4.88 kcal Atomic # 14 Polarization: -3.51 SS G_CDS: -6.75 Total: -10.25 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -6.94 -8.58 -15.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13308380_9435856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.649 kcal (2) G-P(sol) polarization free energy of solvation -6.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds