Wall clock time and date at job start Sat Mar 6 2021 04:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36500 * 125.80198 * 2 1 4 4 C 1.47227 * 127.20426 * 0.02562 * 3 2 1 5 5 O 1.21535 * 119.99843 * 359.71817 * 4 3 2 6 6 O 1.34771 * 120.00070 * 179.71046 * 4 3 2 7 7 C 1.45202 * 117.00135 * 179.97438 * 6 4 3 8 8 C 1.50698 * 109.47391 * 179.97438 * 7 6 4 9 9 C 1.38228 * 120.00200 * 270.28656 * 8 7 6 10 10 C 1.38238 * 120.00120 * 180.23540 * 9 8 7 11 11 C 1.38234 * 119.99675 * 359.47825 * 10 9 8 12 12 Si 1.86803 * 119.99940 * 180.28096 * 11 10 9 13 13 C 1.86301 * 109.46852 * 90.00443 * 12 11 10 14 14 C 1.86305 * 109.47191 * 210.00145 * 12 11 10 15 15 C 1.86296 * 109.47316 * 330.00190 * 12 11 10 16 16 C 1.38234 * 120.00240 * 0.26327 * 11 10 9 17 17 C 1.38234 * 119.99739 * 90.00021 * 8 7 6 18 18 C 1.47067 * 105.59442 * 179.75601 * 3 2 1 19 19 C 1.34159 * 105.94697 * 0.23457 * 18 3 2 20 20 C 1.50700 * 125.42405 * 179.97438 * 19 18 3 21 21 O 1.42907 * 109.47208 * 299.99988 * 20 19 18 22 22 Si 1.86298 * 109.47124 * 180.02562 * 20 19 18 23 23 H 1.48503 * 109.47058 * 59.99933 * 22 20 19 24 24 H 1.48504 * 109.47253 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47062 * 300.00353 * 22 20 19 26 26 O 1.33627 * 125.81339 * 180.16257 * 2 1 3 27 27 H 1.09001 * 109.47011 * 90.01137 * 1 2 3 28 28 H 1.09010 * 109.46774 * 210.00038 * 1 2 3 29 29 H 1.08991 * 109.47955 * 330.00264 * 1 2 3 30 30 H 1.09007 * 109.46820 * 60.00183 * 7 6 4 31 31 H 1.08998 * 109.47701 * 300.00573 * 7 6 4 32 32 H 1.08004 * 120.00256 * 359.97438 * 9 8 7 33 33 H 1.08002 * 120.00519 * 179.76445 * 10 9 8 34 34 H 1.08992 * 109.47179 * 60.00150 * 13 12 11 35 35 H 1.09007 * 109.47049 * 179.97438 * 13 12 11 36 36 H 1.08994 * 109.47120 * 299.99515 * 13 12 11 37 37 H 1.09002 * 109.46698 * 60.00064 * 14 12 11 38 38 H 1.08998 * 109.47017 * 180.02562 * 14 12 11 39 39 H 1.09004 * 109.46851 * 300.00496 * 14 12 11 40 40 H 1.09006 * 109.46796 * 60.00075 * 15 12 11 41 41 H 1.08998 * 109.47288 * 179.97438 * 15 12 11 42 42 H 1.09002 * 109.47253 * 300.00352 * 15 12 11 43 43 H 1.07997 * 120.00460 * 180.02562 * 16 11 10 44 44 H 1.08001 * 120.00310 * 0.02562 * 17 8 7 45 45 H 1.07995 * 127.02466 * 180.19951 * 18 3 2 46 46 H 1.09003 * 109.47346 * 59.99789 * 20 19 18 47 47 H 0.96700 * 113.99752 * 300.00164 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.1071 0.0000 4 6 1.8752 2.5151 0.0005 5 8 0.6910 2.7886 -0.0042 6 8 2.7944 3.5006 0.0063 7 6 2.2980 4.8651 0.0059 8 6 3.4613 5.8230 0.0135 9 6 3.9925 6.2558 1.2140 10 6 5.0565 7.1383 1.2210 11 6 5.5963 7.5795 0.0273 12 14 7.0392 8.7659 0.0367 13 6 8.6343 7.8034 0.0426 14 6 6.9686 9.8416 -1.4828 15 6 6.9536 9.8358 1.5594 16 6 5.0686 7.1425 -1.1733 17 6 4.0011 6.2642 -1.1802 18 6 3.6856 0.5991 0.0060 19 6 3.5860 -0.7388 0.0037 20 6 4.7457 -1.7011 0.0075 21 8 5.5476 -1.4853 -1.1555 22 14 4.1020 -3.4494 0.0015 23 1 3.2798 -3.6699 -1.2153 24 1 5.2449 -4.3977 0.0046 25 1 3.2684 -3.6740 1.2096 26 8 2.2889 -1.0836 -0.0031 27 1 -0.3633 -0.0002 -1.0277 28 1 -0.3633 -0.8901 0.5139 29 1 -0.3635 0.8899 0.5137 30 1 1.6866 5.0296 0.8933 31 1 1.6951 5.0322 -0.8866 32 1 3.5735 5.9078 2.1467 33 1 5.4691 7.4795 2.1590 34 1 8.6843 7.1776 -0.8483 35 1 9.4763 8.4957 0.0476 36 1 8.6757 7.1742 0.9316 37 1 6.0352 10.4046 -1.4863 38 1 7.8107 10.5335 -1.4776 39 1 7.0186 9.2155 -2.3738 40 1 6.9950 9.2063 2.4484 41 1 7.7958 10.5277 1.5651 42 1 6.0203 10.3988 1.5559 43 1 5.4905 7.4869 -2.1059 44 1 3.5888 5.9228 -2.1182 45 1 4.5937 1.1836 0.0107 46 1 5.3495 -1.5389 0.9004 47 1 5.0740 -1.6124 -1.9889 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13308380_9435856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:30:38 Heat of formation + Delta-G solvation = -116.805122 kcal Electronic energy + Delta-G solvation = -27278.928787 eV Core-core repulsion = 23324.149068 eV Total energy + Delta-G solvation = -3954.779719 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.140 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.93899 -41.45831 -39.98045 -38.05953 -37.63572 -34.42362 -33.29041 -32.99055 -31.91316 -29.63886 -29.41505 -28.28691 -28.26373 -27.71382 -25.96385 -24.54936 -23.51442 -22.75860 -22.07763 -20.79249 -19.14405 -18.53899 -18.00831 -17.93949 -17.41460 -17.27126 -16.71121 -16.03222 -16.00687 -15.80265 -15.70440 -14.86121 -14.49713 -14.45923 -14.38863 -14.16455 -14.11368 -14.08388 -14.00676 -13.88190 -13.80899 -13.71014 -13.45434 -13.10536 -13.09695 -13.01859 -12.95873 -12.82995 -12.70283 -12.23230 -12.11888 -12.09052 -11.79307 -11.75579 -11.10020 -10.91992 -10.79990 -10.75144 -10.63595 -9.83483 -9.74617 -9.72334 -0.09379 0.07258 0.49366 0.66509 1.04294 1.23584 1.46442 1.59280 1.70432 1.81782 1.83524 1.90338 2.03349 2.13638 2.66732 2.92071 3.13834 3.42336 3.51351 3.62677 3.74362 3.75224 4.00926 4.08927 4.18707 4.23837 4.34808 4.45719 4.50576 4.50916 4.55817 4.65787 4.68190 4.85425 4.85551 4.89563 4.90229 4.90797 4.91363 4.95833 5.00235 5.09311 5.13263 5.20151 5.38278 5.54006 5.56580 5.60134 5.68803 5.71380 5.74860 6.08981 6.53626 6.54356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.108 3.892 3 C -0.263 4.263 4 C 0.542 3.458 5 O -0.529 6.529 6 O -0.349 6.349 7 C 0.110 3.890 8 C -0.106 4.106 9 C -0.120 4.120 10 C -0.102 4.102 11 C -0.371 4.371 12 Si 1.128 2.872 13 C -0.464 4.464 14 C -0.462 4.462 15 C -0.462 4.462 16 C -0.102 4.102 17 C -0.120 4.120 18 C -0.133 4.133 19 C -0.061 4.061 20 C -0.036 4.036 21 O -0.538 6.538 22 Si 0.992 3.008 23 H -0.260 1.260 24 H -0.253 1.253 25 H -0.262 1.262 26 O -0.171 6.171 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.127 0.873 33 H 0.142 0.858 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.142 0.858 44 H 0.127 0.873 45 H 0.170 0.830 46 H 0.154 0.846 47 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.084 0.075 -0.102 2.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.054 3.946 3 C -0.266 4.266 4 C 0.389 3.611 5 O -0.421 6.421 6 O -0.266 6.266 7 C 0.037 3.963 8 C -0.106 4.106 9 C -0.138 4.138 10 C -0.119 4.119 11 C -0.410 4.410 12 Si 1.315 2.685 13 C -0.570 4.570 14 C -0.569 4.569 15 C -0.569 4.569 16 C -0.119 4.119 17 C -0.138 4.138 18 C -0.152 4.152 19 C -0.109 4.109 20 C -0.146 4.146 21 O -0.346 6.346 22 Si 0.814 3.186 23 H -0.184 1.184 24 H -0.176 1.176 25 H -0.186 1.186 26 O -0.068 6.068 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.145 0.855 33 H 0.160 0.840 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.160 0.840 44 H 0.145 0.855 45 H 0.187 0.813 46 H 0.171 0.829 47 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 1.757 -0.884 0.327 1.994 hybrid contribution -0.684 0.581 -0.385 0.977 sum 1.073 -0.303 -0.058 1.116 Atomic orbital electron populations 1.20851 0.81682 1.06154 1.05878 1.23300 0.94936 0.82445 0.93900 1.20329 0.95108 0.90325 1.20798 1.20067 0.83459 0.85585 0.71956 1.90821 1.18499 1.84729 1.48046 1.86636 1.39495 1.16535 1.83886 1.21953 0.94547 0.76051 1.03753 1.19556 0.97969 0.98344 0.94704 1.21376 0.97124 0.97988 0.97326 1.21404 0.95177 0.95918 0.99444 1.28124 1.11315 1.07819 0.93760 0.77160 0.61803 0.63257 0.66235 1.26295 1.17140 1.09165 1.04393 1.26274 1.04746 1.10245 1.15657 1.26273 1.04761 1.10186 1.15698 1.21403 0.95197 0.95968 0.99377 1.21377 0.97045 0.97987 0.97406 1.22745 0.96345 0.93467 1.02605 1.23101 0.82785 0.96002 1.08976 1.24530 0.89822 1.06594 0.93611 1.86558 1.38599 1.93302 1.16110 0.85017 0.78921 0.73392 0.81241 1.18373 1.17624 1.18585 1.83714 1.17069 1.34690 1.71307 0.87448 0.87568 0.88104 0.89924 0.89924 0.85500 0.84022 0.91452 0.90596 0.91441 0.91239 0.90598 0.90917 0.90910 0.90597 0.91237 0.84033 0.85508 0.81259 0.82889 0.75627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.07 9.89 71.24 0.70 0.77 16 2 C 0.11 0.44 7.38 25.28 0.19 0.63 16 3 C -0.26 -1.83 6.32 -19.00 -0.12 -1.95 16 4 C 0.54 5.16 7.95 70.18 0.56 5.72 16 5 O -0.53 -6.38 14.64 19.72 0.29 -6.10 16 6 O -0.35 -3.04 10.12 -56.82 -0.57 -3.61 16 7 C 0.11 0.62 5.60 71.24 0.40 1.02 16 8 C -0.11 -0.54 5.52 -19.87 -0.11 -0.65 16 9 C -0.12 -0.45 9.70 22.27 0.22 -0.23 16 10 C -0.10 -0.12 9.29 22.27 0.21 0.09 16 11 C -0.37 0.08 4.59 22.27 0.10 0.19 16 12 Si 1.13 -6.41 12.32 68.60 0.85 -5.56 16 13 C -0.46 1.55 8.65 113.37 0.98 2.53 16 14 C -0.46 2.04 8.53 113.37 0.97 3.01 16 15 C -0.46 2.05 8.53 113.37 0.97 3.02 16 16 C -0.10 -0.12 9.29 22.27 0.21 0.09 16 17 C -0.12 -0.45 9.70 22.27 0.22 -0.24 16 18 C -0.13 -0.57 10.91 23.66 0.26 -0.32 16 19 C -0.06 -0.12 6.20 24.75 0.15 0.04 16 20 C -0.04 0.09 2.97 71.24 0.21 0.30 16 21 O -0.54 0.95 12.86 -148.98 -1.92 -0.96 16 22 Si 0.99 -2.10 27.37 68.60 1.88 -0.23 16 23 H -0.26 0.10 7.11 99.48 0.71 0.80 16 24 H -0.25 0.18 7.11 99.48 0.71 0.89 16 25 H -0.26 -0.10 7.11 99.48 0.71 0.60 16 26 O -0.17 -0.57 8.88 4.71 0.04 -0.53 16 27 H 0.11 -0.32 8.14 -2.39 -0.02 -0.34 16 28 H 0.11 -0.52 8.14 -2.38 -0.02 -0.54 16 29 H 0.10 0.18 6.49 -2.39 -0.02 0.17 16 30 H 0.08 0.39 8.08 -2.38 -0.02 0.37 16 31 H 0.08 0.39 8.08 -2.39 -0.02 0.37 16 32 H 0.13 0.18 8.06 -2.91 -0.02 0.15 16 33 H 0.14 -0.48 7.43 -2.91 -0.02 -0.50 16 34 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 35 H 0.07 -0.31 7.96 -2.38 -0.02 -0.33 16 36 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 37 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 38 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 39 H 0.07 -0.34 7.69 -2.38 -0.02 -0.36 16 40 H 0.07 -0.35 7.69 -2.38 -0.02 -0.36 16 41 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 42 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 43 H 0.14 -0.47 7.43 -2.91 -0.02 -0.49 16 44 H 0.13 0.18 8.06 -2.91 -0.02 0.16 16 45 H 0.17 0.50 8.06 -2.91 -0.02 0.48 16 46 H 0.15 -0.90 7.96 -2.39 -0.02 -0.92 16 47 H 0.39 -3.08 8.70 -74.06 -0.64 -3.73 16 Total: 0.00 -16.02 404.29 7.75 -8.27 By element: Atomic # 1 Polarization: -6.36 SS G_CDS: 1.08 Total: -5.28 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 6.11 Total: 14.00 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -2.16 Total: -11.20 kcal Atomic # 14 Polarization: -8.51 SS G_CDS: 2.72 Total: -5.79 kcal Total: -16.02 7.75 -8.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13308380_9435856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.534 kcal (2) G-P(sol) polarization free energy of solvation -16.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds