Wall clock time and date at job start Sat Mar 6 2021 06:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 O 1.42895 * 109.47503 * 239.99913 * 2 1 3 6 6 C 1.42899 * 113.99963 * 59.99687 * 5 2 1 7 7 H 1.08996 * 112.85051 * 20.34062 * 6 5 2 8 8 C 1.53783 * 113.61086 * 151.53412 * 6 5 2 9 9 C 1.53787 * 87.08252 * 139.98184 * 8 6 5 10 10 H 1.09002 * 113.61279 * 89.19432 * 9 8 6 11 11 C 1.52992 * 113.61538 * 220.01944 * 9 8 6 12 12 O 1.45203 * 109.47114 * 185.00226 * 11 9 8 13 13 C 1.34765 * 116.99954 * 180.02562 * 12 11 9 14 14 O 1.21519 * 120.00148 * 359.97438 * 13 12 11 15 15 C 1.47424 * 119.99820 * 179.97438 * 13 12 11 16 16 C 1.39889 * 120.00594 * 359.72406 * 15 13 12 17 17 C 1.36539 * 119.99273 * 179.72001 * 16 15 13 18 18 C 1.39840 * 120.00346 * 0.52855 * 17 16 15 19 19 C 1.47544 * 119.99276 * 179.74294 * 18 17 16 20 20 C 1.34997 * 125.27498 * 359.74378 * 19 18 17 21 21 C 1.37786 * 114.69847 * 179.83106 * 20 19 18 22 22 C 1.33750 * 115.08260 * 0.46000 * 21 20 19 23 23 C 1.50704 * 125.12156 * 179.78798 * 22 21 20 24 24 O 1.42905 * 109.47058 * 299.98539 * 23 22 21 25 25 Si 1.86298 * 109.47469 * 179.97438 * 23 22 21 26 26 S 1.75863 * 109.76211 * 359.75054 * 22 21 20 27 27 C 1.39840 * 120.01368 * 359.76798 * 18 17 16 28 28 C 1.36532 * 120.00530 * 359.95217 * 27 18 17 29 29 C 1.53781 * 113.61620 * 249.13844 * 6 5 2 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 33 33 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 34 34 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 36 36 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 37 37 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 38 38 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 39 39 H 1.09007 * 113.61498 * 254.52584 * 8 6 5 40 40 H 1.08990 * 113.61892 * 25.34814 * 8 6 5 41 41 H 1.09005 * 109.47121 * 304.99819 * 11 9 8 42 42 H 1.09001 * 109.47565 * 64.99494 * 11 9 8 43 43 H 1.08004 * 120.00329 * 359.97438 * 16 15 13 44 44 H 1.08003 * 119.99795 * 180.27657 * 17 16 15 45 45 H 1.07999 * 122.64902 * 0.02562 * 20 19 18 46 46 H 1.08000 * 122.46057 * 180.19141 * 21 20 19 47 47 H 1.09004 * 109.47182 * 59.97974 * 23 22 21 48 48 H 0.96701 * 113.99605 * 300.00061 * 24 23 22 49 49 H 1.48500 * 110.00170 * 180.02562 * 25 23 22 50 50 H 1.48504 * 109.99799 * 301.32010 * 25 23 22 51 51 H 1.07997 * 119.99557 * 179.97438 * 27 18 17 52 52 H 1.08004 * 120.00535 * 180.02562 * 28 27 18 53 53 H 1.09004 * 113.61554 * 334.57310 * 29 6 5 54 54 H 1.09004 * 113.61084 * 105.47070 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 2.0064 -0.6736 -1.1667 6 6 1.5847 -0.0774 -2.3950 7 1 1.2774 0.9618 -2.2775 8 6 2.5661 -0.3019 -3.5575 9 6 1.3340 -0.5115 -4.4536 10 1 0.9579 0.4087 -4.9009 11 6 1.5014 -1.6416 -5.4711 12 8 0.3409 -1.6838 -6.3429 13 6 0.3303 -2.6305 -7.3020 14 8 1.2654 -3.3993 -7.4073 15 6 -0.8159 -2.7332 -8.2235 16 6 -1.8950 -1.8519 -8.0987 17 6 -2.9538 -1.9437 -8.9560 18 6 -2.9645 -2.9256 -9.9516 19 6 -4.1113 -3.0282 -10.8742 20 6 -5.2043 -2.2362 -10.8504 21 6 -6.1436 -2.5222 -11.8169 22 6 -5.8349 -3.5439 -12.6229 23 6 -6.6979 -4.0509 -13.7496 24 8 -7.9576 -4.4801 -13.2288 25 14 -5.8501 -5.4842 -14.5848 26 16 -4.2697 -4.2061 -12.1707 27 6 -1.8886 -3.8107 -10.0726 28 6 -0.8270 -3.7158 -9.2193 29 6 0.5770 -0.9327 -3.1810 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 -1.7488 1.2493 37 1 3.1300 -0.7207 1.2495 38 1 1.6766 -0.2073 2.1393 39 1 3.1478 0.5833 -3.8150 40 1 3.1815 -1.1942 -3.4433 41 1 2.3970 -1.4646 -6.0668 42 1 1.5963 -2.5922 -4.9462 43 1 -1.8889 -1.0964 -7.3270 44 1 -3.7850 -1.2604 -8.8626 45 1 -5.3308 -1.4393 -10.1325 46 1 -7.0638 -1.9651 -11.9138 47 1 -6.8574 -3.2514 -14.4732 48 1 -7.8919 -5.1916 -12.5772 49 1 -6.6908 -5.9928 -15.6983 50 1 -4.5251 -5.0586 -15.1030 51 1 -1.8973 -4.5693 -10.8413 52 1 0.0041 -4.3991 -9.3130 53 1 0.6465 -1.9987 -2.9643 54 1 -0.4449 -0.5561 -3.1348 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13308396_14598394.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:26:02 Heat of formation + Delta-G solvation = -73.728946 kcal Electronic energy + Delta-G solvation = -33661.911974 eV Core-core repulsion = 29044.218771 eV Total energy + Delta-G solvation = -4617.693203 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 403.158 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -41.80162 -40.87989 -40.23728 -39.13705 -38.51820 -37.43294 -37.27301 -33.93619 -33.64167 -32.38978 -30.74729 -29.68354 -28.34773 -28.31657 -27.30937 -26.62953 -25.03701 -24.09148 -23.69554 -23.32309 -22.07267 -20.86160 -20.61920 -20.26943 -19.15043 -18.83676 -18.18838 -17.64234 -17.55073 -17.51884 -16.67204 -16.52268 -16.26624 -16.09456 -16.07806 -15.87016 -15.70100 -15.32351 -14.93295 -14.78573 -14.55940 -14.50528 -14.45959 -14.20208 -14.02041 -13.87804 -13.61510 -13.47399 -13.35113 -13.31021 -13.18442 -13.11865 -12.97636 -12.78827 -12.65305 -12.59876 -12.42187 -12.30550 -12.19505 -12.08658 -11.93057 -11.81749 -11.60107 -11.54050 -11.33564 -11.17043 -10.85336 -10.54298 -10.35603 -10.23455 -9.55058 -9.09719 -5.15748 -0.99885 0.13854 0.30323 0.37292 0.75264 1.21738 1.32777 1.47050 1.55991 1.80533 1.86394 2.72401 2.73044 3.32154 3.40903 3.44657 3.53040 3.59523 3.68239 3.74865 3.76809 3.81545 3.83847 3.92659 3.98803 4.09311 4.12378 4.16185 4.19608 4.24574 4.36237 4.38249 4.45130 4.49733 4.55937 4.61131 4.63680 4.68426 4.77021 4.77892 4.79533 4.84862 4.89788 4.92055 4.95119 4.98303 5.01370 5.04937 5.12368 5.14581 5.19526 5.22010 5.27752 5.31238 5.33968 5.34448 5.40736 5.46301 5.66792 6.43173 6.57107 6.66699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.098 3.902 3 C -0.177 4.177 4 C -0.140 4.140 5 O -0.383 6.383 6 C 0.060 3.940 7 H 0.105 0.895 8 C -0.126 4.126 9 C -0.100 4.100 10 H 0.120 0.880 11 C 0.078 3.922 12 O -0.346 6.346 13 C 0.509 3.491 14 O -0.539 6.539 15 C -0.146 4.146 16 C -0.046 4.046 17 C -0.115 4.115 18 C 0.021 3.979 19 C -0.165 4.165 20 C -0.112 4.112 21 C -0.111 4.111 22 C -0.219 4.219 23 C -0.025 4.025 24 O -0.547 6.547 25 Si 0.717 3.283 26 S 0.129 5.871 27 C -0.131 4.131 28 C -0.052 4.052 29 C -0.148 4.148 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.160 0.840 44 H 0.162 0.838 45 H 0.166 0.834 46 H 0.154 0.846 47 H 0.123 0.877 48 H 0.397 0.603 49 H -0.269 1.269 50 H -0.267 1.267 51 H 0.142 0.858 52 H 0.138 0.862 53 H 0.077 0.923 54 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.467 3.243 2.653 5.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.059 3.941 3 C -0.234 4.234 4 C -0.198 4.198 5 O -0.303 6.303 6 C 0.003 3.997 7 H 0.123 0.877 8 C -0.163 4.163 9 C -0.118 4.118 10 H 0.138 0.862 11 C 0.005 3.995 12 O -0.262 6.262 13 C 0.356 3.644 14 O -0.431 6.431 15 C -0.148 4.148 16 C -0.065 4.065 17 C -0.134 4.134 18 C 0.019 3.981 19 C -0.282 4.282 20 C -0.143 4.143 21 C -0.141 4.141 22 C -0.336 4.336 23 C -0.139 4.139 24 O -0.355 6.355 25 Si 0.621 3.379 26 S 0.396 5.604 27 C -0.150 4.150 28 C -0.070 4.070 29 C -0.186 4.186 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.177 0.823 44 H 0.179 0.821 45 H 0.184 0.816 46 H 0.172 0.828 47 H 0.140 0.860 48 H 0.247 0.753 49 H -0.195 1.195 50 H -0.193 1.193 51 H 0.159 0.841 52 H 0.156 0.844 53 H 0.095 0.905 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.048 1.796 0.951 2.885 hybrid contribution -0.648 1.487 0.427 1.677 sum -2.695 3.282 1.378 4.465 Atomic orbital electron populations 1.22442 0.94866 1.02563 1.03197 1.21673 0.93764 0.92493 0.86127 1.22450 1.01896 0.95757 1.03319 1.21802 1.01635 1.00733 0.95595 1.88019 1.74278 1.54326 1.13648 1.23679 0.95578 0.97553 0.82936 0.87697 1.23215 0.96294 1.03528 0.93307 1.22360 0.98577 0.98422 0.92482 0.86230 1.23198 0.85892 0.99875 0.90554 1.86522 1.45766 1.51988 1.41948 1.21423 0.86156 0.77515 0.79277 1.90849 1.37789 1.42793 1.71680 1.19271 0.94849 1.02008 0.98648 1.21349 0.90807 0.96430 0.97866 1.21221 0.99758 0.98414 0.94057 1.18537 0.91352 0.94925 0.93322 1.23137 0.99380 1.03479 1.02157 1.20660 0.92131 1.01033 1.00447 1.20182 1.01282 0.97461 0.95201 1.25194 0.99959 1.03362 1.05130 1.24420 0.87494 1.06007 0.95957 1.86496 1.26697 1.59067 1.63215 0.94196 0.77481 0.81925 0.84328 1.84161 1.15861 1.33482 1.26879 1.21029 0.93224 1.00206 1.00502 1.20971 0.98336 0.95674 0.92047 1.23641 0.99455 1.00917 0.94601 0.92549 0.91797 0.90607 0.90429 0.92278 0.91598 0.92521 0.92382 0.89719 0.89106 0.89755 0.90871 0.91600 0.82260 0.82070 0.81643 0.82839 0.85991 0.75307 1.19468 1.19278 0.84051 0.84427 0.90474 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.31 8.36 71.98 0.60 0.91 16 2 C 0.10 0.01 1.12 -10.79 -0.01 0.00 16 3 C -0.18 0.40 8.38 71.98 0.60 1.00 16 4 C -0.14 0.03 8.84 71.98 0.64 0.66 16 5 O -0.38 -1.43 10.00 -148.98 -1.49 -2.92 16 6 C 0.06 -0.04 2.80 31.12 0.09 0.05 16 7 H 0.11 -0.37 5.59 -2.39 -0.01 -0.38 16 8 C -0.13 0.18 7.47 31.12 0.23 0.42 16 9 C -0.10 0.19 4.02 -10.21 -0.04 0.15 16 10 H 0.12 -0.53 8.14 -2.39 -0.02 -0.55 16 11 C 0.08 0.18 5.32 71.98 0.38 0.57 16 12 O -0.35 -1.43 9.45 -56.75 -0.54 -1.96 16 13 C 0.51 3.83 7.89 70.24 0.55 4.39 16 14 O -0.54 -7.30 16.12 19.77 0.32 -6.98 16 15 C -0.15 -0.55 5.88 -20.06 -0.12 -0.67 16 16 C -0.05 0.05 9.56 22.27 0.21 0.26 16 17 C -0.11 0.31 9.48 22.26 0.21 0.52 16 18 C 0.02 0.00 5.88 -20.05 -0.12 -0.12 16 19 C -0.16 0.10 6.37 23.98 0.15 0.25 16 20 C -0.11 0.29 9.64 21.42 0.21 0.50 16 21 C -0.11 0.20 10.00 21.14 0.21 0.41 16 22 C -0.22 0.29 5.73 24.67 0.14 0.43 16 23 C -0.03 0.05 2.96 71.24 0.21 0.26 16 24 O -0.55 0.86 12.86 -148.98 -1.92 -1.05 16 25 Si 0.72 -1.40 30.96 68.60 2.12 0.72 16 26 S 0.13 -0.14 19.46 -56.49 -1.10 -1.24 16 27 C -0.13 -0.12 9.54 22.26 0.21 0.09 16 28 C -0.05 -0.17 9.53 22.27 0.21 0.04 16 29 C -0.15 0.12 7.39 31.18 0.23 0.35 16 30 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.06 -0.18 7.01 -2.39 -0.02 -0.20 16 32 H 0.07 -0.28 8.14 -2.38 -0.02 -0.30 16 33 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 34 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.07 -0.24 6.23 -2.39 -0.01 -0.25 16 36 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 39 H 0.09 -0.35 8.14 -2.38 -0.02 -0.37 16 40 H 0.08 0.07 8.10 -2.39 -0.02 0.05 16 41 H 0.07 0.19 8.14 -2.38 -0.02 0.18 16 42 H 0.07 0.28 7.85 -2.39 -0.02 0.26 16 43 H 0.16 -0.77 7.59 -2.91 -0.02 -0.79 16 44 H 0.16 -1.31 6.74 -2.91 -0.02 -1.33 16 45 H 0.17 -1.21 6.88 -2.91 -0.02 -1.23 16 46 H 0.15 -0.54 8.06 -2.91 -0.02 -0.56 16 47 H 0.12 -0.20 7.96 -2.38 -0.02 -0.22 16 48 H 0.40 -3.62 8.70 -74.06 -0.64 -4.26 16 49 H -0.27 -1.10 7.11 99.48 0.71 -0.39 16 50 H -0.27 -0.76 7.11 99.48 0.71 -0.05 16 51 H 0.14 -0.23 7.26 -2.91 -0.02 -0.25 16 52 H 0.14 0.48 7.64 -2.91 -0.02 0.46 16 53 H 0.08 0.17 7.90 -2.39 -0.02 0.15 16 54 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 Total: 0.00 -16.36 452.27 2.52 -13.84 By element: Atomic # 1 Polarization: -11.19 SS G_CDS: 0.31 Total: -10.88 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 4.81 Total: 10.47 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -3.62 Total: -12.91 kcal Atomic # 14 Polarization: -1.40 SS G_CDS: 2.12 Total: 0.72 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -1.10 Total: -1.24 kcal Total: -16.36 2.52 -13.84 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13308396_14598394.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.888 kcal (2) G-P(sol) polarization free energy of solvation -16.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds