Wall clock time and date at job start Sat Mar 6 2021 03:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86297 * 109.47332 * 2 1 4 4 C 1.50705 * 109.46945 * 239.99711 * 2 1 3 5 5 C 1.33747 * 125.11741 * 300.00179 * 4 2 1 6 6 C 1.37790 * 115.07811 * 179.75332 * 5 4 2 7 7 C 1.34994 * 114.70194 * 0.49939 * 6 5 4 8 8 C 1.47543 * 125.27822 * 179.79329 * 7 6 5 9 9 C 1.39836 * 119.99316 * 179.71603 * 8 7 6 10 10 C 1.36543 * 120.00374 * 179.72187 * 9 8 7 11 11 C 1.39885 * 119.99702 * 0.25918 * 10 9 8 12 12 C 1.47416 * 120.01359 * 179.97438 * 11 10 9 13 13 O 1.21524 * 119.99240 * 0.02562 * 12 11 10 14 14 O 1.34764 * 120.00525 * 180.02562 * 12 11 10 15 15 C 1.45205 * 116.99697 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46686 * 180.02562 * 15 14 12 17 17 H 1.08995 * 109.47574 * 54.99403 * 16 15 14 18 18 C 1.52999 * 109.47116 * 174.99684 * 16 15 14 19 19 C 1.53002 * 109.47087 * 179.97438 * 18 16 15 20 20 C 1.52995 * 109.47146 * 299.99697 * 19 18 16 21 21 H 1.08995 * 109.47225 * 300.00253 * 20 19 18 22 22 O 1.42906 * 109.47030 * 179.97438 * 20 19 18 23 23 C 1.53008 * 109.46943 * 60.00352 * 20 19 18 24 24 C 1.53000 * 109.46805 * 294.99547 * 16 15 14 25 25 C 1.39902 * 119.98495 * 0.02562 * 11 10 9 26 26 C 1.36534 * 119.99138 * 359.97438 * 25 11 10 27 27 S 1.75857 * 125.11642 * 120.02456 * 4 2 1 28 28 H 0.96703 * 114.00160 * 60.00400 * 1 2 3 29 29 H 1.09001 * 109.47287 * 119.99838 * 2 1 3 30 30 H 1.48505 * 109.99868 * 298.67994 * 3 2 1 31 31 H 1.48495 * 110.00038 * 59.99723 * 3 2 1 32 32 H 1.07998 * 122.46214 * 0.02562 * 5 4 2 33 33 H 1.08003 * 122.64791 * 180.31397 * 6 5 4 34 34 H 1.08002 * 120.00046 * 0.02562 * 9 8 7 35 35 H 1.07999 * 120.00236 * 180.27814 * 10 9 8 36 36 H 1.08999 * 109.46959 * 299.99037 * 15 14 12 37 37 H 1.08997 * 109.47266 * 59.99748 * 15 14 12 38 38 H 1.08999 * 109.46855 * 299.99740 * 18 16 15 39 39 H 1.09003 * 109.46941 * 59.99734 * 18 16 15 40 40 H 1.09003 * 109.47124 * 60.00242 * 19 18 16 41 41 H 1.08997 * 109.46745 * 179.97438 * 19 18 16 42 42 H 0.96704 * 113.99940 * 180.02562 * 22 20 19 43 43 H 1.08995 * 109.47241 * 59.99910 * 23 20 19 44 44 H 1.08999 * 109.46917 * 179.97438 * 23 20 19 45 45 H 1.09001 * 109.47466 * 299.99777 * 24 16 15 46 46 H 1.08997 * 109.47367 * 60.00470 * 24 16 15 47 47 H 1.08002 * 120.00265 * 179.97438 * 25 11 10 48 48 H 1.08002 * 119.99477 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.6720 -1.9849 -1.5428 6 6 2.2331 -2.4228 -2.7226 7 6 2.9677 -1.4975 -3.3756 8 6 3.6734 -1.7159 -4.6528 9 6 4.4004 -0.6738 -5.2368 10 6 5.0582 -0.8773 -6.4159 11 6 5.0003 -2.1267 -7.0425 12 6 5.7098 -2.3466 -8.3158 13 8 6.3456 -1.4425 -8.8210 14 8 5.6535 -3.5501 -8.9195 15 6 6.3768 -3.6946 -10.1703 16 6 6.1965 -5.1179 -10.7021 17 1 5.1333 -5.3424 -10.7864 18 6 6.8532 -5.2348 -12.0791 19 6 6.6735 -6.6582 -12.6106 20 6 7.3296 -7.6490 -11.6470 21 1 8.3928 -7.4242 -11.5627 22 8 7.1612 -8.9786 -12.1431 23 6 6.6729 -7.5321 -10.2699 24 6 6.8522 -6.1091 -9.7386 25 6 4.2679 -3.1672 -6.4610 26 6 3.6104 -2.9631 -5.2819 27 16 2.9471 0.0111 -2.4715 28 1 -0.3933 0.4417 -0.7651 29 1 1.7924 -0.5138 0.8900 30 1 1.5879 2.4585 -1.2243 31 1 1.5615 2.4678 1.2084 32 1 1.0637 -2.6225 -0.9185 33 1 2.0983 -3.4280 -3.0941 34 1 4.4457 0.2905 -4.7527 35 1 5.6234 -0.0739 -6.8646 36 1 5.9883 -2.9831 -10.8989 37 1 7.4361 -3.5006 -10.0020 38 1 6.3860 -4.5286 -12.7655 39 1 7.9165 -5.0103 -11.9947 40 1 5.6102 -6.8831 -12.6948 41 1 7.1409 -6.7413 -13.5917 42 1 7.5532 -9.6608 -11.5809 43 1 5.6097 -7.7570 -10.3541 44 1 7.1400 -8.2384 -9.5835 45 1 7.9156 -5.8847 -9.6543 46 1 6.3844 -6.0259 -8.7576 47 1 4.2227 -4.1318 -6.9447 48 1 3.0453 -3.7665 -4.8328 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_13308396_16737258.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:17:48 Heat of formation + Delta-G solvation = -122.350093 kcal Electronic energy + Delta-G solvation = -29994.676579 eV Core-core repulsion = 25685.950243 eV Total energy + Delta-G solvation = -4308.726336 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.127 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.67009 -40.47914 -39.96221 -39.20662 -37.75168 -37.47324 -36.53946 -33.71734 -32.46211 -31.92387 -31.91096 -30.59937 -27.72184 -26.53754 -24.87214 -24.05715 -23.85703 -23.54641 -22.41521 -21.89641 -20.95368 -20.36295 -19.19220 -18.82510 -18.24115 -17.94886 -17.62609 -17.45463 -16.72500 -16.50619 -16.37221 -16.21895 -15.95594 -15.62885 -15.55017 -15.26034 -14.99594 -14.74093 -14.62263 -14.48671 -14.26111 -13.98244 -13.82172 -13.69386 -13.65919 -13.32938 -13.30647 -13.20778 -13.09459 -12.60944 -12.57596 -12.38302 -12.21459 -12.17550 -11.92674 -11.75357 -11.59853 -11.56661 -11.44513 -11.17631 -10.92628 -10.76535 -10.70699 -10.27643 -9.61771 -9.13365 -5.14891 -1.01060 0.13699 0.25778 0.31804 0.68667 1.13349 1.39247 1.49033 1.56497 1.79746 1.83028 2.71779 3.10634 3.19144 3.32941 3.48820 3.54724 3.58172 3.65785 3.67541 3.74078 3.77666 3.99795 4.07602 4.11959 4.18874 4.21304 4.27413 4.29305 4.32423 4.38224 4.41170 4.42161 4.47297 4.50452 4.57232 4.71102 4.82433 4.86242 4.91224 4.96945 4.98745 5.01942 5.07438 5.07895 5.15175 5.17865 5.21794 5.24193 5.32848 5.38568 5.43812 5.62201 6.22714 6.67298 6.73532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.523 6.523 2 C -0.033 4.033 3 Si 0.649 3.351 4 C -0.215 4.215 5 C -0.105 4.105 6 C -0.115 4.115 7 C -0.153 4.153 8 C 0.024 3.976 9 C -0.126 4.126 10 C -0.044 4.044 11 C -0.128 4.128 12 C 0.510 3.490 13 O -0.504 6.504 14 O -0.350 6.350 15 C 0.072 3.928 16 C -0.089 4.089 17 H 0.086 0.914 18 C -0.111 4.111 19 C -0.111 4.111 20 C 0.102 3.898 21 H 0.055 0.945 22 O -0.569 6.569 23 C -0.152 4.152 24 C -0.112 4.112 25 C -0.052 4.052 26 C -0.117 4.117 27 S 0.135 5.865 28 H 0.378 0.622 29 H 0.129 0.871 30 H -0.240 1.240 31 H -0.234 1.234 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.133 0.867 35 H 0.143 0.857 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.379 0.621 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.143 0.857 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.136 -1.618 1.842 2.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.330 6.330 2 C -0.146 4.146 3 Si 0.547 3.453 4 C -0.333 4.333 5 C -0.135 4.135 6 C -0.146 4.146 7 C -0.269 4.269 8 C 0.022 3.978 9 C -0.144 4.144 10 C -0.062 4.062 11 C -0.130 4.130 12 C 0.355 3.645 13 O -0.393 6.393 14 O -0.267 6.267 15 C -0.001 4.001 16 C -0.107 4.107 17 H 0.105 0.895 18 C -0.148 4.148 19 C -0.149 4.149 20 C 0.044 3.956 21 H 0.073 0.927 22 O -0.375 6.375 23 C -0.190 4.190 24 C -0.150 4.150 25 C -0.071 4.071 26 C -0.137 4.137 27 S 0.403 5.597 28 H 0.226 0.774 29 H 0.146 0.854 30 H -0.164 1.164 31 H -0.157 1.157 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.151 0.849 35 H 0.161 0.839 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.226 0.774 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.161 0.839 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.529 0.966 1.553 2.384 hybrid contribution -1.256 -1.818 0.089 2.211 sum 0.273 -0.851 1.642 1.870 Atomic orbital electron populations 1.86631 1.17145 1.79911 1.49280 1.24384 0.83860 1.10061 0.96247 0.95231 0.91835 0.75158 0.83069 1.25062 1.06953 0.99029 1.02234 1.20013 1.01259 0.94869 0.97372 1.20418 0.98335 1.00593 0.95235 1.23084 1.06161 0.98147 0.99556 1.18374 0.94409 0.94033 0.90967 1.20928 0.98438 0.98908 0.96170 1.20935 0.95858 0.95770 0.93618 1.19206 1.03388 0.96031 0.94363 1.21068 0.78448 0.80419 0.84614 1.90874 1.40030 1.43439 1.64958 1.86514 1.68227 1.34273 1.37704 1.23190 0.96496 0.97887 0.82565 1.21273 1.01981 0.92348 0.95130 0.89545 1.21478 1.01453 0.96819 0.95074 1.21438 1.02003 0.92666 0.98751 1.21851 0.98201 0.82848 0.92741 0.92695 1.86522 1.82024 1.16133 1.52817 1.22270 1.02397 0.97397 0.96901 1.21524 1.00998 0.93450 0.98991 1.21168 0.92958 0.98710 0.94218 1.20947 1.00668 0.96450 0.95633 1.84166 1.48572 1.12362 1.14615 0.77384 0.85391 1.16385 1.15684 0.83587 0.83656 0.84872 0.83929 0.90774 0.90821 0.90635 0.91157 0.90911 0.90773 0.77388 0.90903 0.91486 0.91687 0.90706 0.83896 0.84560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.21 12.86 -35.23 -0.45 -0.66 16 2 C -0.03 0.03 2.96 36.01 0.11 0.14 16 3 Si 0.65 -0.78 30.96 -169.99 -5.26 -6.04 16 4 C -0.22 0.10 5.73 -35.88 -0.21 -0.10 16 5 C -0.10 0.04 10.00 -41.32 -0.41 -0.37 16 6 C -0.12 0.07 9.64 -40.90 -0.39 -0.32 16 7 C -0.15 0.00 6.37 -36.94 -0.24 -0.24 16 8 C 0.02 0.00 5.88 -104.91 -0.62 -0.61 16 9 C -0.13 -0.01 9.54 -39.60 -0.38 -0.38 16 10 C -0.04 -0.03 9.53 -39.58 -0.38 -0.41 16 11 C -0.13 -0.16 5.88 -104.92 -0.62 -0.77 16 12 C 0.51 1.35 7.89 34.47 0.27 1.62 16 13 O -0.50 -2.64 16.12 -19.28 -0.31 -2.95 16 14 O -0.35 -0.42 9.00 -40.67 -0.37 -0.78 16 15 C 0.07 0.00 4.85 37.16 0.18 0.18 16 16 C -0.09 0.12 2.44 -90.62 -0.22 -0.10 16 17 H 0.09 -0.09 8.14 -51.93 -0.42 -0.52 16 18 C -0.11 0.19 5.20 -26.73 -0.14 0.05 16 19 C -0.11 0.06 5.57 -26.73 -0.15 -0.09 16 20 C 0.10 -0.05 3.47 -26.73 -0.09 -0.15 16 21 H 0.06 -0.05 8.14 -51.93 -0.42 -0.48 16 22 O -0.57 -0.46 13.32 -35.23 -0.47 -0.93 16 23 C -0.15 0.21 5.54 -26.75 -0.15 0.06 16 24 C -0.11 0.16 5.10 -26.75 -0.14 0.03 16 25 C -0.05 0.02 9.56 -39.57 -0.38 -0.35 16 26 C -0.12 0.10 9.48 -39.60 -0.38 -0.27 16 27 S 0.14 -0.07 19.46 -107.50 -2.09 -2.17 16 28 H 0.38 -0.87 8.70 45.56 0.40 -0.47 16 29 H 0.13 -0.24 7.96 -51.93 -0.41 -0.65 16 30 H -0.24 -0.15 7.11 56.52 0.40 0.25 16 31 H -0.23 -0.35 7.11 56.52 0.40 0.05 16 32 H 0.15 -0.18 8.06 -52.49 -0.42 -0.60 16 33 H 0.15 -0.37 6.88 -52.48 -0.36 -0.73 16 34 H 0.13 -0.18 7.26 -52.49 -0.38 -0.56 16 35 H 0.14 0.06 7.64 -52.49 -0.40 -0.34 16 36 H 0.07 0.01 8.14 -51.93 -0.42 -0.42 16 37 H 0.07 0.01 8.14 -51.93 -0.42 -0.42 16 38 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 39 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 40 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 41 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 42 H 0.38 -1.14 9.08 45.56 0.41 -0.73 16 43 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 44 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 45 H 0.06 -0.10 8.14 -51.93 -0.42 -0.52 16 46 H 0.07 -0.09 7.82 -51.93 -0.41 -0.49 16 47 H 0.14 -0.28 7.59 -52.49 -0.40 -0.68 16 48 H 0.14 -0.40 6.74 -52.49 -0.35 -0.75 16 LS Contribution 407.83 15.07 6.15 6.15 Total: 0.00 -7.26 407.83 -13.30 -20.56 By element: Atomic # 1 Polarization: -4.91 SS G_CDS: -6.17 Total: -11.08 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -4.32 Total: -2.09 kcal Atomic # 8 Polarization: -3.73 SS G_CDS: -1.60 Total: -5.32 kcal Atomic # 14 Polarization: -0.78 SS G_CDS: -5.26 Total: -6.04 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -2.09 Total: -2.17 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -7.26 -13.30 -20.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13308396_16737258.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.791 kcal (2) G-P(sol) polarization free energy of solvation -7.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds