Wall clock time and date at job start Sat Mar 6 2021 03:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86297 * 109.47332 * 2 1 4 4 C 1.50705 * 109.46945 * 239.99711 * 2 1 3 5 5 C 1.33747 * 125.11741 * 300.00179 * 4 2 1 6 6 C 1.37790 * 115.07811 * 179.75332 * 5 4 2 7 7 C 1.34994 * 114.70194 * 0.49939 * 6 5 4 8 8 C 1.47543 * 125.27822 * 179.79329 * 7 6 5 9 9 C 1.39836 * 119.99316 * 179.71603 * 8 7 6 10 10 C 1.36543 * 120.00374 * 179.72187 * 9 8 7 11 11 C 1.39885 * 119.99702 * 0.25918 * 10 9 8 12 12 C 1.47416 * 120.01359 * 179.97438 * 11 10 9 13 13 O 1.21524 * 119.99240 * 0.02562 * 12 11 10 14 14 O 1.34764 * 120.00525 * 180.02562 * 12 11 10 15 15 C 1.45205 * 116.99697 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46686 * 180.02562 * 15 14 12 17 17 H 1.08995 * 109.47574 * 54.99403 * 16 15 14 18 18 C 1.52999 * 109.47116 * 174.99684 * 16 15 14 19 19 C 1.53002 * 109.47087 * 179.97438 * 18 16 15 20 20 C 1.52995 * 109.47146 * 299.99697 * 19 18 16 21 21 H 1.08995 * 109.47225 * 300.00253 * 20 19 18 22 22 O 1.42906 * 109.47030 * 179.97438 * 20 19 18 23 23 C 1.53008 * 109.46943 * 60.00352 * 20 19 18 24 24 C 1.53000 * 109.46805 * 294.99547 * 16 15 14 25 25 C 1.39902 * 119.98495 * 0.02562 * 11 10 9 26 26 C 1.36534 * 119.99138 * 359.97438 * 25 11 10 27 27 S 1.75857 * 125.11642 * 120.02456 * 4 2 1 28 28 H 0.96703 * 114.00160 * 60.00400 * 1 2 3 29 29 H 1.09001 * 109.47287 * 119.99838 * 2 1 3 30 30 H 1.48505 * 109.99868 * 298.67994 * 3 2 1 31 31 H 1.48495 * 110.00038 * 59.99723 * 3 2 1 32 32 H 1.07998 * 122.46214 * 0.02562 * 5 4 2 33 33 H 1.08003 * 122.64791 * 180.31397 * 6 5 4 34 34 H 1.08002 * 120.00046 * 0.02562 * 9 8 7 35 35 H 1.07999 * 120.00236 * 180.27814 * 10 9 8 36 36 H 1.08999 * 109.46959 * 299.99037 * 15 14 12 37 37 H 1.08997 * 109.47266 * 59.99748 * 15 14 12 38 38 H 1.08999 * 109.46855 * 299.99740 * 18 16 15 39 39 H 1.09003 * 109.46941 * 59.99734 * 18 16 15 40 40 H 1.09003 * 109.47124 * 60.00242 * 19 18 16 41 41 H 1.08997 * 109.46745 * 179.97438 * 19 18 16 42 42 H 0.96704 * 113.99940 * 180.02562 * 22 20 19 43 43 H 1.08995 * 109.47241 * 59.99910 * 23 20 19 44 44 H 1.08999 * 109.46917 * 179.97438 * 23 20 19 45 45 H 1.09001 * 109.47466 * 299.99777 * 24 16 15 46 46 H 1.08997 * 109.47367 * 60.00470 * 24 16 15 47 47 H 1.08002 * 120.00265 * 179.97438 * 25 11 10 48 48 H 1.08002 * 119.99477 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.6720 -1.9849 -1.5428 6 6 2.2331 -2.4228 -2.7226 7 6 2.9677 -1.4975 -3.3756 8 6 3.6734 -1.7159 -4.6528 9 6 4.4004 -0.6738 -5.2368 10 6 5.0582 -0.8773 -6.4159 11 6 5.0003 -2.1267 -7.0425 12 6 5.7098 -2.3466 -8.3158 13 8 6.3456 -1.4425 -8.8210 14 8 5.6535 -3.5501 -8.9195 15 6 6.3768 -3.6946 -10.1703 16 6 6.1965 -5.1179 -10.7021 17 1 5.1333 -5.3424 -10.7864 18 6 6.8532 -5.2348 -12.0791 19 6 6.6735 -6.6582 -12.6106 20 6 7.3296 -7.6490 -11.6470 21 1 8.3928 -7.4242 -11.5627 22 8 7.1612 -8.9786 -12.1431 23 6 6.6729 -7.5321 -10.2699 24 6 6.8522 -6.1091 -9.7386 25 6 4.2679 -3.1672 -6.4610 26 6 3.6104 -2.9631 -5.2819 27 16 2.9471 0.0111 -2.4715 28 1 -0.3933 0.4417 -0.7651 29 1 1.7924 -0.5138 0.8900 30 1 1.5879 2.4585 -1.2243 31 1 1.5615 2.4678 1.2084 32 1 1.0637 -2.6225 -0.9185 33 1 2.0983 -3.4280 -3.0941 34 1 4.4457 0.2905 -4.7527 35 1 5.6234 -0.0739 -6.8646 36 1 5.9883 -2.9831 -10.8989 37 1 7.4361 -3.5006 -10.0020 38 1 6.3860 -4.5286 -12.7655 39 1 7.9165 -5.0103 -11.9947 40 1 5.6102 -6.8831 -12.6948 41 1 7.1409 -6.7413 -13.5917 42 1 7.5532 -9.6608 -11.5809 43 1 5.6097 -7.7570 -10.3541 44 1 7.1400 -8.2384 -9.5835 45 1 7.9156 -5.8847 -9.6543 46 1 6.3844 -6.0259 -8.7576 47 1 4.2227 -4.1318 -6.9447 48 1 3.0453 -3.7665 -4.8328 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13308396_16737258.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:17:47 Heat of formation + Delta-G solvation = -116.657959 kcal Electronic energy + Delta-G solvation = -29994.429750 eV Core-core repulsion = 25685.950243 eV Total energy + Delta-G solvation = -4308.479507 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.127 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.77919 -40.43759 -39.93746 -39.15875 -37.83103 -37.47132 -36.55995 -33.70316 -32.42386 -31.89406 -31.82081 -30.56138 -27.70808 -26.50533 -24.83937 -24.01998 -23.77517 -23.49431 -22.37203 -21.94709 -20.87269 -20.30360 -19.20218 -18.84997 -18.21359 -18.02752 -17.60954 -17.55545 -16.66282 -16.46040 -16.31858 -16.17543 -15.92828 -15.61639 -15.49023 -15.24671 -14.98447 -14.67179 -14.57176 -14.44605 -14.26685 -13.99817 -13.78734 -13.66833 -13.62349 -13.31820 -13.21867 -13.14903 -13.08015 -12.58564 -12.54594 -12.42494 -12.13522 -12.11497 -11.95996 -11.73326 -11.63878 -11.53637 -11.49422 -11.09480 -10.90106 -10.70371 -10.67511 -10.23231 -9.54993 -9.09533 -5.08428 -0.99600 0.14051 0.30490 0.38062 0.75351 1.19630 1.34498 1.49462 1.52530 1.81162 1.85311 2.72797 3.20628 3.30236 3.35957 3.52229 3.62980 3.65319 3.72685 3.74326 3.79807 3.81776 4.04794 4.14868 4.16528 4.23336 4.28241 4.35367 4.36533 4.39607 4.48240 4.48951 4.51552 4.54621 4.57049 4.62543 4.81428 4.90022 4.94979 4.99283 5.03568 5.06926 5.09342 5.15366 5.17777 5.18034 5.22763 5.28637 5.32418 5.33474 5.45282 5.46476 5.67034 6.37409 6.58600 6.86726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.034 4.034 3 Si 0.710 3.290 4 C -0.216 4.216 5 C -0.112 4.112 6 C -0.112 4.112 7 C -0.165 4.165 8 C 0.021 3.979 9 C -0.131 4.131 10 C -0.052 4.052 11 C -0.146 4.146 12 C 0.510 3.490 13 O -0.538 6.538 14 O -0.346 6.346 15 C 0.070 3.930 16 C -0.081 4.081 17 H 0.085 0.915 18 C -0.106 4.106 19 C -0.112 4.112 20 C 0.099 3.901 21 H 0.060 0.940 22 O -0.591 6.591 23 C -0.145 4.145 24 C -0.110 4.110 25 C -0.047 4.047 26 C -0.116 4.116 27 S 0.130 5.870 28 H 0.388 0.612 29 H 0.140 0.860 30 H -0.266 1.266 31 H -0.273 1.273 32 H 0.154 0.846 33 H 0.166 0.834 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.393 0.607 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.074 0.926 47 H 0.159 0.841 48 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.878 -2.811 2.471 3.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.147 4.147 3 Si 0.612 3.388 4 C -0.334 4.334 5 C -0.142 4.142 6 C -0.143 4.143 7 C -0.282 4.282 8 C 0.019 3.981 9 C -0.150 4.150 10 C -0.070 4.070 11 C -0.147 4.147 12 C 0.357 3.643 13 O -0.430 6.430 14 O -0.262 6.262 15 C -0.004 4.004 16 C -0.100 4.100 17 H 0.103 0.897 18 C -0.144 4.144 19 C -0.150 4.150 20 C 0.041 3.959 21 H 0.078 0.922 22 O -0.399 6.399 23 C -0.183 4.183 24 C -0.147 4.147 25 C -0.065 4.065 26 C -0.135 4.135 27 S 0.398 5.602 28 H 0.237 0.763 29 H 0.157 0.843 30 H -0.191 1.191 31 H -0.198 1.198 32 H 0.172 0.828 33 H 0.183 0.817 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.243 0.757 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.177 0.823 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.278 -0.254 2.179 2.538 hybrid contribution -1.222 -1.445 -0.076 1.894 sum 0.056 -1.699 2.103 2.704 Atomic orbital electron populations 1.86603 1.17810 1.80201 1.50133 1.24477 0.83370 1.10140 0.96678 0.94480 0.90971 0.73798 0.79503 1.25128 1.06891 0.99186 1.02197 1.20186 1.01389 0.94954 0.97657 1.20659 0.97450 1.01336 0.94851 1.23155 1.06863 0.98430 0.99772 1.18530 0.94144 0.94389 0.91056 1.21036 0.98445 0.99541 0.95975 1.20973 0.96218 0.95778 0.94030 1.19272 1.04437 0.96847 0.94194 1.21374 0.77816 0.80242 0.84832 1.90850 1.41721 1.44458 1.65978 1.86513 1.68133 1.33562 1.38041 1.23296 0.96306 0.98660 0.82103 1.21216 1.01987 0.91478 0.95285 0.89674 1.21444 1.01805 0.96266 0.94859 1.21444 1.01455 0.93364 0.98697 1.21921 0.98566 0.82390 0.93025 0.92163 1.86483 1.82457 1.17058 1.53901 1.22199 1.01904 0.97590 0.96606 1.21506 1.01114 0.93311 0.98803 1.21340 0.92119 0.98794 0.94223 1.21216 1.00350 0.96700 0.95255 1.84177 1.48696 1.12581 1.14784 0.76263 0.84260 1.19109 1.19797 0.82809 0.81704 0.84066 0.84370 0.91043 0.90960 0.90170 0.90639 0.91686 0.91318 0.75726 0.91628 0.90526 0.91415 0.90778 0.82343 0.82170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.24 12.86 -148.98 -1.92 -2.16 16 2 C -0.03 0.08 2.96 71.24 0.21 0.29 16 3 Si 0.71 -1.44 30.96 68.60 2.12 0.68 16 4 C -0.22 0.35 5.73 24.67 0.14 0.49 16 5 C -0.11 0.23 10.00 21.14 0.21 0.44 16 6 C -0.11 0.31 9.64 21.42 0.21 0.52 16 7 C -0.17 0.14 6.37 23.98 0.15 0.29 16 8 C 0.02 -0.01 5.88 -20.05 -0.12 -0.13 16 9 C -0.13 -0.06 9.54 22.26 0.21 0.16 16 10 C -0.05 -0.13 9.53 22.27 0.21 0.08 16 11 C -0.15 -0.43 5.88 -20.06 -0.12 -0.55 16 12 C 0.51 3.19 7.89 70.24 0.55 3.74 16 13 O -0.54 -6.50 16.12 19.76 0.32 -6.18 16 14 O -0.35 -0.95 9.00 -56.75 -0.51 -1.46 16 15 C 0.07 0.03 4.85 71.98 0.35 0.38 16 16 C -0.08 0.22 2.44 -10.79 -0.03 0.19 16 17 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 18 C -0.11 0.36 5.20 30.59 0.16 0.52 16 19 C -0.11 0.10 5.57 30.59 0.17 0.27 16 20 C 0.10 -0.12 3.47 30.60 0.11 -0.01 16 21 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 22 O -0.59 -0.92 13.32 -148.98 -1.98 -2.91 16 23 C -0.15 0.47 5.54 30.58 0.17 0.64 16 24 C -0.11 0.37 5.10 30.58 0.16 0.52 16 25 C -0.05 0.08 9.56 22.27 0.21 0.29 16 26 C -0.12 0.35 9.48 22.26 0.21 0.56 16 27 S 0.13 -0.17 19.46 -56.49 -1.10 -1.27 16 28 H 0.39 -1.83 8.70 -74.06 -0.64 -2.48 16 29 H 0.14 -0.64 7.96 -2.39 -0.02 -0.66 16 30 H -0.27 -0.54 7.11 99.48 0.71 0.17 16 31 H -0.27 -1.16 7.11 99.48 0.71 -0.45 16 32 H 0.15 -0.59 8.06 -2.91 -0.02 -0.61 16 33 H 0.17 -1.22 6.88 -2.91 -0.02 -1.24 16 34 H 0.14 -0.29 7.26 -2.91 -0.02 -0.31 16 35 H 0.14 0.37 7.64 -2.91 -0.02 0.35 16 36 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 39 H 0.07 -0.32 8.14 -2.39 -0.02 -0.33 16 40 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 42 H 0.39 -2.46 9.08 -74.05 -0.67 -3.13 16 43 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 45 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 46 H 0.07 -0.21 7.82 -2.39 -0.02 -0.23 16 47 H 0.16 -0.83 7.59 -2.91 -0.02 -0.85 16 48 H 0.16 -1.32 6.74 -2.91 -0.02 -1.34 16 Total: 0.00 -16.95 407.83 -0.18 -17.13 By element: Atomic # 1 Polarization: -12.25 SS G_CDS: -0.28 Total: -12.54 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 3.17 Total: 8.70 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -4.09 Total: -12.70 kcal Atomic # 14 Polarization: -1.44 SS G_CDS: 2.12 Total: 0.68 kcal Atomic # 16 Polarization: -0.17 SS G_CDS: -1.10 Total: -1.27 kcal Total: -16.95 -0.18 -17.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13308396_16737258.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.529 kcal (2) G-P(sol) polarization free energy of solvation -16.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds