Wall clock time and date at job start Sat Mar 6 2021 03:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99771 * 2 1 4 4 C 1.52994 * 112.85251 * 294.92807 * 3 2 1 5 5 F 1.39901 * 109.47214 * 65.65141 * 4 3 2 6 6 F 1.39902 * 109.47114 * 305.64877 * 4 3 2 7 7 F 1.39898 * 109.47308 * 185.65238 * 4 3 2 8 8 C 1.53781 * 113.60994 * 163.73111 * 3 2 1 9 9 C 1.53956 * 87.02166 * 270.76847 * 8 3 2 10 10 H 1.08998 * 113.74650 * 220.05184 * 9 8 3 11 11 C 1.53001 * 113.53225 * 89.18750 * 9 8 3 12 12 O 1.45210 * 109.47129 * 87.51000 * 11 9 8 13 13 C 1.34760 * 117.00112 * 179.97438 * 12 11 9 14 14 O 1.21522 * 120.00131 * 359.97438 * 13 12 11 15 15 C 1.47423 * 120.00195 * 179.97438 * 13 12 11 16 16 C 1.39891 * 120.00137 * 359.71755 * 15 13 12 17 17 C 1.36535 * 119.99134 * 179.73959 * 16 15 13 18 18 C 1.39842 * 120.00628 * 0.54420 * 17 16 15 19 19 C 1.47544 * 119.99643 * 179.76211 * 18 17 16 20 20 C 1.34989 * 125.27421 * 359.68759 * 19 18 17 21 21 C 1.37791 * 114.70168 * 179.86302 * 20 19 18 22 22 C 1.33758 * 115.07727 * 0.43093 * 21 20 19 23 23 C 1.50702 * 125.11555 * 179.79062 * 22 21 20 24 24 O 1.42909 * 109.47108 * 300.00169 * 23 22 21 25 25 Si 1.86293 * 109.46839 * 180.02562 * 23 22 21 26 26 S 1.75851 * 109.76320 * 359.77030 * 22 21 20 27 27 C 1.39841 * 120.01320 * 359.73191 * 18 17 16 28 28 C 1.36547 * 120.00229 * 359.97438 * 27 18 17 29 29 C 1.53778 * 87.11039 * 334.64105 * 9 8 3 30 30 H 1.08993 * 109.46888 * 186.65845 * 1 2 3 31 31 H 1.08995 * 109.46899 * 306.66173 * 1 2 3 32 32 H 1.08999 * 109.47162 * 66.65968 * 1 2 3 33 33 H 1.08995 * 113.61809 * 25.34858 * 8 3 2 34 34 H 1.09000 * 113.61283 * 156.25293 * 8 3 2 35 35 H 1.09000 * 109.47457 * 207.50428 * 11 9 8 36 36 H 1.08995 * 109.47402 * 327.50880 * 11 9 8 37 37 H 1.08004 * 120.00487 * 0.02562 * 16 15 13 38 38 H 1.08003 * 120.00272 * 180.27608 * 17 16 15 39 39 H 1.08004 * 122.65066 * 0.04585 * 20 19 18 40 40 H 1.07998 * 122.46168 * 180.20597 * 21 20 19 41 41 H 1.08996 * 109.47243 * 60.00354 * 23 22 21 42 42 H 0.96692 * 113.99837 * 179.97438 * 24 23 22 43 43 H 1.48504 * 110.00520 * 59.99998 * 25 23 22 44 44 H 1.48504 * 110.00169 * 181.31687 * 25 23 22 45 45 H 1.07991 * 120.00110 * 179.97438 * 27 18 17 46 46 H 1.08001 * 119.99942 * 180.02562 * 28 27 18 47 47 H 1.09003 * 113.61081 * 270.80819 * 29 9 8 48 48 H 1.08998 * 113.61634 * 139.90690 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7090 2.0900 -1.2785 5 9 0.3366 2.3507 -1.3533 6 9 2.1021 1.3378 -2.3907 7 9 2.4130 3.2988 -1.2607 8 6 3.4965 1.3180 0.3948 9 6 3.0253 1.4720 1.8523 10 1 3.6294 2.1649 2.4380 11 6 2.7941 0.1374 2.5639 12 8 4.0384 -0.3149 3.1604 13 6 4.0064 -1.4839 3.8301 14 8 2.9670 -2.1080 3.9137 15 6 5.2322 -2.0056 4.4613 16 6 6.4300 -1.2902 4.3601 17 6 7.5640 -1.7709 4.9494 18 6 7.5307 -2.9840 5.6442 19 6 8.7575 -3.5059 6.2764 20 6 9.9662 -2.9058 6.2456 21 6 10.9631 -3.5844 6.9122 22 6 10.5845 -4.7353 7.4788 23 6 11.4881 -5.6573 8.2562 24 8 12.5545 -6.1006 7.4144 25 14 10.5121 -7.1296 8.8482 26 16 8.8734 -5.0103 7.1804 27 6 6.3347 -3.7023 5.7407 28 6 5.1990 -3.2190 5.1567 29 6 1.7398 2.1001 1.2885 30 1 -0.3633 -1.0207 0.1192 31 1 -0.3633 0.6136 0.8243 32 1 -0.3633 0.4071 -0.9436 33 1 4.0086 0.3763 0.1977 34 1 4.0409 2.1839 0.0182 35 1 2.0434 0.2665 3.3435 36 1 2.4464 -0.6030 1.8435 37 1 6.4568 -0.3553 3.8199 38 1 8.4879 -1.2165 4.8751 39 1 10.1377 -1.9664 5.7410 40 1 11.9767 -3.2159 6.9697 41 1 11.8994 -5.1250 9.1138 42 1 13.1769 -6.6986 7.8502 43 1 9.9463 -7.8639 7.6880 44 1 11.3843 -8.0309 9.6433 45 1 6.3093 -4.6393 6.2770 46 1 4.2753 -3.7735 5.2315 47 1 1.8031 3.1803 1.1567 48 1 0.8358 1.7888 1.8118 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13308396_17321610.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:39:54 Heat of formation + Delta-G solvation = -203.527044 kcal Electronic energy + Delta-G solvation = -38055.623503 eV Core-core repulsion = 32335.015143 eV Total energy + Delta-G solvation = -5720.608360 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 429.099 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -51.26330 -48.80048 -48.73286 -41.90677 -41.20742 -40.18483 -39.04682 -37.81303 -37.50795 -36.88332 -33.72356 -32.37155 -31.02692 -30.41050 -28.27768 -27.78970 -26.95200 -26.76583 -24.83480 -23.98006 -23.50352 -23.24774 -22.04383 -20.68846 -20.10351 -19.79818 -19.55868 -19.25579 -19.01186 -18.72380 -18.49214 -17.82721 -17.55232 -17.18475 -16.97673 -16.50425 -16.23532 -16.06800 -15.80091 -15.66165 -15.62857 -15.59438 -15.45529 -15.23782 -15.08422 -14.95923 -14.89057 -14.83105 -14.61507 -14.48964 -14.26288 -14.20110 -14.10485 -13.77533 -13.46855 -13.29374 -13.27863 -13.14644 -13.06632 -12.77340 -12.73419 -12.40576 -12.36318 -12.18226 -12.03032 -11.75205 -11.68613 -11.60378 -11.55490 -10.86107 -10.79246 -10.50512 -10.20500 -9.54176 -9.06644 -5.09201 -0.97277 0.15083 0.33155 0.37599 0.75581 1.17373 1.37105 1.46284 1.52641 1.52939 1.82971 1.85503 2.08501 2.56084 2.62524 2.75342 2.88276 3.24362 3.29560 3.31529 3.41236 3.46706 3.61064 3.70441 3.77936 3.82786 3.84801 4.18734 4.21094 4.23530 4.25123 4.31741 4.37420 4.38448 4.46179 4.46389 4.51696 4.58042 4.61859 4.64861 4.69502 4.77698 4.82939 4.92517 4.96627 5.02517 5.09764 5.20751 5.24250 5.31574 5.36009 5.48029 5.69594 5.70564 6.52619 6.60852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.350 6.350 3 C 0.031 3.969 4 C 0.434 3.566 5 F -0.186 7.186 6 F -0.189 7.189 7 F -0.174 7.174 8 C -0.111 4.111 9 C -0.090 4.090 10 H 0.127 0.873 11 C 0.076 3.924 12 O -0.345 6.345 13 C 0.512 3.488 14 O -0.537 6.537 15 C -0.146 4.146 16 C -0.045 4.045 17 C -0.115 4.115 18 C 0.021 3.979 19 C -0.166 4.166 20 C -0.111 4.111 21 C -0.114 4.114 22 C -0.182 4.182 23 C -0.038 4.038 24 O -0.553 6.553 25 Si 0.704 3.296 26 S 0.127 5.873 27 C -0.133 4.133 28 C -0.052 4.052 29 C -0.135 4.135 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.130 0.870 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.169 0.831 40 H 0.155 0.845 41 H 0.113 0.887 42 H 0.399 0.601 43 H -0.284 1.284 44 H -0.253 1.253 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.130 0.870 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.104 3.583 5.528 7.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.268 6.268 3 C -0.012 4.012 4 C 0.379 3.621 5 F -0.167 7.167 6 F -0.170 7.170 7 F -0.155 7.155 8 C -0.148 4.148 9 C -0.108 4.108 10 H 0.145 0.855 11 C 0.002 3.998 12 O -0.261 6.261 13 C 0.358 3.642 14 O -0.429 6.429 15 C -0.147 4.147 16 C -0.063 4.063 17 C -0.135 4.135 18 C 0.019 3.981 19 C -0.283 4.283 20 C -0.142 4.142 21 C -0.144 4.144 22 C -0.300 4.300 23 C -0.150 4.150 24 O -0.363 6.363 25 Si 0.606 3.394 26 S 0.395 5.605 27 C -0.151 4.151 28 C -0.070 4.070 29 C -0.173 4.173 30 H 0.125 0.875 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.148 0.852 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.180 0.820 38 H 0.180 0.820 39 H 0.186 0.814 40 H 0.173 0.827 41 H 0.130 0.870 42 H 0.250 0.750 43 H -0.210 1.210 44 H -0.177 1.177 45 H 0.157 0.843 46 H 0.156 0.844 47 H 0.148 0.852 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.475 1.578 5.485 5.895 hybrid contribution 1.304 0.628 -1.290 1.939 sum 2.779 2.206 4.195 5.495 Atomic orbital electron populations 1.23318 0.78793 1.05069 1.02044 1.88082 1.22088 1.22714 1.93879 1.24262 1.00788 0.86144 0.89975 1.21523 0.74126 0.78871 0.87536 1.93165 1.32295 1.94386 1.96873 1.93189 1.90689 1.76277 1.56851 1.93179 1.78671 1.46974 1.96692 1.23363 0.90150 1.05900 0.95374 1.22070 0.98139 0.95429 0.95163 0.85481 1.23110 0.83306 0.96179 0.97167 1.86477 1.39024 1.36947 1.63648 1.21342 0.88649 0.78764 0.75407 1.90851 1.33898 1.59140 1.58992 1.19263 0.92089 0.98244 1.05114 1.21367 0.90178 0.99454 0.95327 1.21227 1.00022 0.94903 0.97320 1.18529 0.90437 0.94383 0.94769 1.23150 0.97264 1.00464 1.07389 1.20658 0.90483 1.02271 1.00780 1.20206 1.01531 0.94293 0.98391 1.24110 0.97136 1.00558 1.08161 1.24134 0.91948 1.03856 0.95023 1.86556 1.39486 1.68357 1.41943 0.94586 0.85058 0.78115 0.81602 1.84137 1.05096 1.20642 1.50661 1.21025 0.91592 1.00980 1.01539 1.20962 0.99239 0.93514 0.93288 1.23669 0.99675 1.01827 0.92087 0.87500 0.91213 0.93062 0.89128 0.85185 0.90439 0.90412 0.81964 0.82042 0.81360 0.82713 0.86966 0.74965 1.21038 1.17729 0.84257 0.84413 0.85166 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 10.17 113.37 1.15 1.15 16 2 O -0.35 -0.80 8.53 -148.98 -1.27 -2.07 16 3 C 0.03 -0.03 0.79 -10.27 -0.01 -0.04 16 4 C 0.43 0.99 2.61 71.98 0.19 1.18 16 5 F -0.19 -0.60 14.85 44.97 0.67 0.07 16 6 F -0.19 -1.24 17.26 44.97 0.78 -0.46 16 7 F -0.17 -0.23 15.72 44.97 0.71 0.48 16 8 C -0.11 0.40 6.92 31.18 0.22 0.61 16 9 C -0.09 0.46 4.22 -10.21 -0.04 0.42 16 10 H 0.13 -1.08 8.14 -2.39 -0.02 -1.10 16 11 C 0.08 0.01 5.06 71.98 0.36 0.38 16 12 O -0.34 -0.82 9.45 -56.71 -0.54 -1.36 16 13 C 0.51 3.27 7.89 70.24 0.55 3.83 16 14 O -0.54 -6.63 16.12 19.77 0.32 -6.31 16 15 C -0.15 -0.47 5.88 -20.06 -0.12 -0.59 16 16 C -0.05 0.07 9.56 22.27 0.21 0.28 16 17 C -0.12 0.29 9.48 22.26 0.21 0.51 16 18 C 0.02 0.01 5.88 -20.05 -0.12 -0.10 16 19 C -0.17 -0.15 6.37 23.98 0.15 0.00 16 20 C -0.11 0.13 9.64 21.42 0.21 0.33 16 21 C -0.11 -0.01 10.00 21.15 0.21 0.20 16 22 C -0.18 -0.21 5.76 24.67 0.14 -0.07 16 23 C -0.04 0.07 2.95 71.24 0.21 0.28 16 24 O -0.55 -0.24 12.83 -148.98 -1.91 -2.15 16 25 Si 0.70 -1.14 30.96 68.60 2.12 0.98 16 26 S 0.13 0.16 19.46 -56.49 -1.10 -0.94 16 27 C -0.13 -0.20 9.54 22.26 0.21 0.01 16 28 C -0.05 -0.17 9.53 22.27 0.21 0.04 16 29 C -0.14 0.80 6.64 31.12 0.21 1.00 16 30 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 31 H 0.07 -0.30 6.56 -2.39 -0.02 -0.32 16 32 H 0.05 0.01 6.31 -2.39 -0.02 -0.01 16 33 H 0.09 -0.14 8.10 -2.39 -0.02 -0.16 16 34 H 0.13 -0.85 7.30 -2.39 -0.02 -0.87 16 35 H 0.08 -0.01 8.14 -2.39 -0.02 -0.02 16 36 H 0.08 0.28 6.12 -2.39 -0.01 0.27 16 37 H 0.16 -0.94 7.59 -2.91 -0.02 -0.96 16 38 H 0.16 -1.29 6.74 -2.91 -0.02 -1.31 16 39 H 0.17 -1.09 6.88 -2.91 -0.02 -1.11 16 40 H 0.16 -0.36 8.06 -2.91 -0.02 -0.38 16 41 H 0.11 -0.76 7.96 -2.39 -0.02 -0.78 16 42 H 0.40 -3.15 8.74 -74.06 -0.65 -3.80 16 43 H -0.28 -1.77 7.11 99.48 0.71 -1.06 16 44 H -0.25 -0.17 7.11 99.48 0.71 0.54 16 45 H 0.14 -0.09 7.26 -2.91 -0.02 -0.11 16 46 H 0.14 0.46 7.64 -2.91 -0.02 0.44 16 47 H 0.13 -1.13 7.69 -2.39 -0.02 -1.15 16 48 H 0.10 -0.72 6.68 -2.39 -0.02 -0.73 16 Total: 0.00 -19.68 422.32 4.39 -15.29 By element: Atomic # 1 Polarization: -13.40 SS G_CDS: 0.44 Total: -12.95 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 4.17 Total: 9.43 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -3.40 Total: -11.89 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 2.15 Total: 0.08 kcal Atomic # 14 Polarization: -1.14 SS G_CDS: 2.12 Total: 0.98 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -1.10 Total: -0.94 kcal Total: -19.68 4.39 -15.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13308396_17321610.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.235 kcal (2) G-P(sol) polarization free energy of solvation -19.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds