Wall clock time and date at job start Sat Mar 6 2021 04:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.46819 * 2 1 4 4 C 1.86307 * 109.46917 * 240.00663 * 2 1 3 5 5 C 1.86292 * 109.47458 * 120.00237 * 2 1 3 6 6 O 1.45206 * 109.46957 * 60.00321 * 5 2 1 7 7 C 1.34760 * 117.00007 * 74.99918 * 6 5 2 8 8 O 1.21511 * 120.00271 * 0.02562 * 7 6 5 9 9 C 1.47419 * 119.99822 * 179.97438 * 7 6 5 10 10 C 1.39892 * 120.00774 * 180.02562 * 9 7 6 11 11 C 1.36541 * 119.99537 * 180.02562 * 10 9 7 12 12 C 1.39837 * 120.00742 * 359.97438 * 11 10 9 13 13 C 1.47543 * 119.99479 * 180.02562 * 12 11 10 14 14 C 1.34991 * 125.27380 * 179.97438 * 13 12 11 15 15 C 1.37786 * 114.70061 * 180.02562 * 14 13 12 16 16 C 1.33754 * 115.08260 * 359.97438 * 15 14 13 17 17 C 1.50701 * 125.12149 * 179.73407 * 16 15 14 18 18 O 1.42902 * 109.46564 * 65.00583 * 17 16 15 19 19 Si 1.86300 * 109.47095 * 185.00083 * 17 16 15 20 20 H 1.48499 * 109.46854 * 60.00500 * 19 17 16 21 21 H 1.48498 * 109.47185 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47402 * 300.00549 * 19 17 16 23 23 S 1.75867 * 109.75945 * 0.02562 * 16 15 14 24 24 C 1.39839 * 120.00992 * 0.29175 * 12 11 10 25 25 C 1.36543 * 120.00780 * 359.44659 * 24 12 11 26 26 H 1.09000 * 109.46937 * 299.99022 * 1 2 3 27 27 H 1.08997 * 109.47761 * 60.00045 * 1 2 3 28 28 H 1.09001 * 109.46662 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46984 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47394 * 300.00372 * 3 2 1 31 31 H 1.09000 * 109.46568 * 60.00751 * 3 2 1 32 32 H 1.09000 * 109.46650 * 299.99472 * 4 2 1 33 33 H 1.09000 * 109.47326 * 59.99609 * 4 2 1 34 34 H 1.08997 * 109.46863 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.47651 * 300.00304 * 5 2 1 36 36 H 1.09003 * 109.47139 * 179.97438 * 5 2 1 37 37 H 1.08003 * 120.00247 * 359.97438 * 10 9 7 38 38 H 1.08003 * 119.99448 * 179.97438 * 11 10 9 39 39 H 1.07995 * 122.65326 * 0.04016 * 14 13 12 40 40 H 1.07997 * 122.46477 * 180.02562 * 15 14 13 41 41 H 1.08997 * 109.46948 * 305.00378 * 17 16 15 42 42 H 0.96700 * 114.00487 * 60.00239 * 18 17 16 43 43 H 1.08004 * 119.99846 * 179.73269 * 24 12 11 44 44 H 1.08004 * 120.00454 * 180.27422 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8781 -1.5213 5 6 2.4841 -0.8782 1.5210 6 8 2.0002 -2.2473 1.5209 7 6 2.5967 -3.1070 0.6718 8 8 3.4970 -2.7233 -0.0485 9 6 2.1579 -4.5133 0.6175 10 6 2.7774 -5.4061 -0.2635 11 6 2.3704 -6.7084 -0.3139 12 6 1.3347 -7.1500 0.5155 13 6 0.8955 -8.5575 0.4612 14 6 -0.0894 -9.0963 1.2109 15 6 -0.3195 -10.4355 0.9829 16 6 0.4651 -10.9959 0.0559 17 6 0.4118 -12.4416 -0.3663 18 8 -0.8449 -12.7089 -0.9918 19 14 1.7908 -12.7883 -1.5700 20 1 3.0967 -12.5104 -0.9199 21 1 1.7378 -14.2127 -1.9865 22 1 1.6367 -11.9180 -2.7633 23 16 1.5741 -9.7935 -0.5901 24 6 0.7115 -6.2565 1.3923 25 6 1.1216 -4.9553 1.4469 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.5739 1.7566 -0.0005 30 1 2.1205 2.2704 -0.8899 31 1 2.1206 2.2702 0.8901 32 1 2.1207 -1.9058 -1.5213 33 1 2.1206 -0.3642 -2.4112 34 1 3.5739 -0.8777 -1.5215 35 1 2.1208 -0.3645 2.4111 36 1 3.5741 -0.8786 1.5207 37 1 3.5770 -5.0650 -0.9043 38 1 2.8484 -7.3975 -0.9943 39 1 -0.6525 -8.5229 1.9323 40 1 -1.0783 -10.9918 1.5131 41 1 0.5249 -13.0803 0.5097 42 1 -1.0134 -12.1750 -1.7803 43 1 -0.0913 -6.5968 2.0296 44 1 0.6432 -4.2663 2.1273 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_13308396_4858416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:38:28 Heat of formation + Delta-G solvation = -93.151777 kcal Electronic energy + Delta-G solvation = -25043.428995 eV Core-core repulsion = 21369.283260 eV Total energy + Delta-G solvation = -3674.145735 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 350.097 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.59841 -40.25252 -39.15785 -37.52471 -37.22111 -33.67942 -32.40135 -30.71353 -29.69853 -28.50390 -28.36351 -28.31203 -26.94872 -24.79869 -23.95508 -23.50601 -21.89967 -20.36287 -19.19546 -18.78253 -17.98001 -17.66560 -17.32523 -16.72399 -16.33090 -16.26871 -15.91097 -15.61517 -15.17542 -14.74912 -14.72919 -14.47355 -14.40889 -14.13063 -14.04561 -13.91194 -13.81882 -13.67532 -13.42336 -13.40730 -13.26147 -13.13702 -13.05307 -12.96647 -12.60935 -12.47545 -12.41949 -12.25609 -12.10215 -11.55741 -11.46335 -10.91866 -10.82196 -10.76629 -10.58736 -10.38658 -10.25349 -9.60686 -9.11362 -0.98651 0.16197 0.27963 0.30142 0.66325 1.03277 1.30042 1.36731 1.43213 1.51098 1.53269 1.80654 1.81458 1.86564 2.03405 2.52719 2.74979 3.29574 3.37431 3.61040 3.69524 3.76448 3.81052 4.14192 4.19649 4.23946 4.32159 4.43230 4.49566 4.56078 4.63367 4.66021 4.68102 4.73091 4.75396 4.84754 4.89781 4.92914 4.95510 5.02672 5.17007 5.19630 5.24074 5.39867 5.40926 5.44403 5.50385 5.64666 5.74125 6.38460 6.80917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 1.000 3.000 3 C -0.446 4.446 4 C -0.436 4.436 5 C -0.238 4.238 6 O -0.333 6.333 7 C 0.493 3.507 8 O -0.489 6.489 9 C -0.126 4.126 10 C -0.045 4.045 11 C -0.126 4.126 12 C 0.022 3.978 13 C -0.147 4.147 14 C -0.116 4.116 15 C -0.101 4.101 16 C -0.217 4.217 17 C -0.039 4.039 18 O -0.532 6.532 19 Si 0.892 3.108 20 H -0.234 1.234 21 H -0.226 1.226 22 H -0.234 1.234 23 S 0.115 5.885 24 C -0.116 4.116 25 C -0.055 4.055 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.081 0.919 37 H 0.143 0.857 38 H 0.132 0.868 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.128 0.872 42 H 0.378 0.622 43 H 0.137 0.863 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.719 -0.099 0.968 1.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.554 4.554 2 Si 1.195 2.805 3 C -0.555 4.555 4 C -0.544 4.544 5 C -0.357 4.357 6 O -0.248 6.248 7 C 0.337 3.663 8 O -0.378 6.378 9 C -0.127 4.127 10 C -0.063 4.063 11 C -0.145 4.145 12 C 0.020 3.980 13 C -0.264 4.264 14 C -0.147 4.147 15 C -0.131 4.131 16 C -0.334 4.334 17 C -0.152 4.152 18 O -0.338 6.338 19 Si 0.712 3.288 20 H -0.156 1.156 21 H -0.149 1.149 22 H -0.156 1.156 23 S 0.383 5.617 24 C -0.136 4.136 25 C -0.073 4.073 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.128 0.872 36 H 0.099 0.901 37 H 0.161 0.839 38 H 0.150 0.850 39 H 0.165 0.835 40 H 0.166 0.834 41 H 0.145 0.855 42 H 0.226 0.774 43 H 0.155 0.845 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.356 -0.643 -0.407 0.840 hybrid contribution -1.233 0.658 1.105 1.782 sum -0.877 0.016 0.698 1.121 Atomic orbital electron populations 1.26061 1.20053 1.04692 1.04576 0.79696 0.67674 0.67075 0.66026 1.26043 1.06501 1.18080 1.04834 1.26243 1.07028 1.07285 1.13888 1.28368 1.05334 0.83801 1.18155 1.86468 1.59006 1.21260 1.58114 1.21101 0.80528 0.86747 0.77876 1.90852 1.28601 1.78052 1.40287 1.19219 1.00896 0.90574 1.02059 1.20933 0.97786 0.91999 0.95587 1.20922 0.97476 0.96111 0.99953 1.18368 0.94597 0.89793 0.95259 1.22995 1.03067 0.96433 1.03939 1.20432 0.98130 0.95142 1.00956 1.20019 1.00536 0.94393 0.98137 1.25096 1.03181 1.00445 1.04707 1.24354 0.95457 0.91130 1.04259 1.86544 1.36029 1.65237 1.45953 0.86299 0.78101 0.84442 0.79991 1.15648 1.14851 1.15642 1.84281 1.37158 1.00009 1.40281 1.20948 1.00712 0.92780 0.99144 1.21197 0.93949 0.95914 0.96277 0.91069 0.90981 0.91074 0.90969 0.90656 0.91051 0.91555 0.91907 0.90421 0.87162 0.90067 0.83897 0.85018 0.83544 0.83383 0.85454 0.77419 0.84528 0.83813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.38 8.65 101.05 0.87 1.25 16 2 Si 1.00 -1.34 12.12 -169.99 -2.06 -3.40 16 3 C -0.45 0.57 8.65 101.05 0.87 1.45 16 4 C -0.44 -0.51 7.10 101.05 0.72 0.21 16 5 C -0.24 0.06 5.40 101.05 0.55 0.61 16 6 O -0.33 -0.49 9.15 -40.66 -0.37 -0.86 16 7 C 0.49 1.24 6.66 34.47 0.23 1.47 16 8 O -0.49 -2.00 12.04 -19.27 -0.23 -2.23 16 9 C -0.13 -0.19 5.88 -104.92 -0.62 -0.80 16 10 C -0.04 -0.05 9.53 -39.58 -0.38 -0.42 16 11 C -0.13 -0.07 9.54 -39.60 -0.38 -0.44 16 12 C 0.02 0.01 5.88 -104.91 -0.62 -0.61 16 13 C -0.15 -0.07 6.37 -36.94 -0.24 -0.30 16 14 C -0.12 0.05 9.64 -40.90 -0.39 -0.34 16 15 C -0.10 0.04 10.03 -41.32 -0.41 -0.38 16 16 C -0.22 0.04 5.71 -35.88 -0.20 -0.17 16 17 C -0.04 0.04 2.96 36.01 0.11 0.15 16 18 O -0.53 0.23 12.88 -35.23 -0.45 -0.22 16 19 Si 0.89 -0.74 26.25 -169.99 -4.46 -5.21 16 20 H -0.23 0.03 7.11 56.52 0.40 0.43 16 21 H -0.23 -0.01 7.11 56.52 0.40 0.39 16 22 H -0.23 0.14 7.11 56.52 0.40 0.54 16 23 S 0.12 0.03 19.47 -107.50 -2.09 -2.06 16 24 C -0.12 0.06 9.48 -39.59 -0.38 -0.32 16 25 C -0.06 0.00 9.56 -39.57 -0.38 -0.37 16 26 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 27 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 28 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 29 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 30 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 31 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 32 H 0.07 0.16 6.28 -51.93 -0.33 -0.17 16 33 H 0.06 0.03 7.96 -51.93 -0.41 -0.38 16 34 H 0.08 0.17 7.42 -51.93 -0.39 -0.21 16 35 H 0.11 -0.25 7.96 -51.93 -0.41 -0.66 16 36 H 0.08 0.02 7.52 -51.93 -0.39 -0.37 16 37 H 0.14 0.08 7.64 -52.48 -0.40 -0.32 16 38 H 0.13 -0.09 7.26 -52.48 -0.38 -0.47 16 39 H 0.15 -0.35 6.88 -52.49 -0.36 -0.71 16 40 H 0.15 -0.21 8.06 -52.49 -0.42 -0.64 16 41 H 0.13 -0.27 7.96 -51.93 -0.41 -0.68 16 42 H 0.38 -1.31 8.70 45.56 0.40 -0.91 16 43 H 0.14 -0.36 6.74 -52.48 -0.35 -0.72 16 44 H 0.14 -0.23 7.59 -52.48 -0.40 -0.63 16 LS Contribution 380.02 15.07 5.73 5.73 Total: 0.00 -5.61 380.02 -10.13 -15.74 By element: Atomic # 1 Polarization: -2.93 SS G_CDS: -5.54 Total: -8.47 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -0.64 Total: 0.98 kcal Atomic # 8 Polarization: -2.25 SS G_CDS: -1.06 Total: -3.31 kcal Atomic # 14 Polarization: -2.08 SS G_CDS: -6.52 Total: -8.60 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.09 Total: -2.06 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -5.61 -10.13 -15.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13308396_4858416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.407 kcal (2) G-P(sol) polarization free energy of solvation -5.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds