Wall clock time and date at job start Sat Mar 6 2021 04:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.46819 * 2 1 4 4 C 1.86307 * 109.46917 * 240.00663 * 2 1 3 5 5 C 1.86292 * 109.47458 * 120.00237 * 2 1 3 6 6 O 1.45206 * 109.46957 * 60.00321 * 5 2 1 7 7 C 1.34760 * 117.00007 * 74.99918 * 6 5 2 8 8 O 1.21511 * 120.00271 * 0.02562 * 7 6 5 9 9 C 1.47419 * 119.99822 * 179.97438 * 7 6 5 10 10 C 1.39892 * 120.00774 * 180.02562 * 9 7 6 11 11 C 1.36541 * 119.99537 * 180.02562 * 10 9 7 12 12 C 1.39837 * 120.00742 * 359.97438 * 11 10 9 13 13 C 1.47543 * 119.99479 * 180.02562 * 12 11 10 14 14 C 1.34991 * 125.27380 * 179.97438 * 13 12 11 15 15 C 1.37786 * 114.70061 * 180.02562 * 14 13 12 16 16 C 1.33754 * 115.08260 * 359.97438 * 15 14 13 17 17 C 1.50701 * 125.12149 * 179.73407 * 16 15 14 18 18 O 1.42902 * 109.46564 * 65.00583 * 17 16 15 19 19 Si 1.86300 * 109.47095 * 185.00083 * 17 16 15 20 20 H 1.48499 * 109.46854 * 60.00500 * 19 17 16 21 21 H 1.48498 * 109.47185 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47402 * 300.00549 * 19 17 16 23 23 S 1.75867 * 109.75945 * 0.02562 * 16 15 14 24 24 C 1.39839 * 120.00992 * 0.29175 * 12 11 10 25 25 C 1.36543 * 120.00780 * 359.44659 * 24 12 11 26 26 H 1.09000 * 109.46937 * 299.99022 * 1 2 3 27 27 H 1.08997 * 109.47761 * 60.00045 * 1 2 3 28 28 H 1.09001 * 109.46662 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46984 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47394 * 300.00372 * 3 2 1 31 31 H 1.09000 * 109.46568 * 60.00751 * 3 2 1 32 32 H 1.09000 * 109.46650 * 299.99472 * 4 2 1 33 33 H 1.09000 * 109.47326 * 59.99609 * 4 2 1 34 34 H 1.08997 * 109.46863 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.47651 * 300.00304 * 5 2 1 36 36 H 1.09003 * 109.47139 * 179.97438 * 5 2 1 37 37 H 1.08003 * 120.00247 * 359.97438 * 10 9 7 38 38 H 1.08003 * 119.99448 * 179.97438 * 11 10 9 39 39 H 1.07995 * 122.65326 * 0.04016 * 14 13 12 40 40 H 1.07997 * 122.46477 * 180.02562 * 15 14 13 41 41 H 1.08997 * 109.46948 * 305.00378 * 17 16 15 42 42 H 0.96700 * 114.00487 * 60.00239 * 18 17 16 43 43 H 1.08004 * 119.99846 * 179.73269 * 24 12 11 44 44 H 1.08004 * 120.00454 * 180.27422 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8781 -1.5213 5 6 2.4841 -0.8782 1.5210 6 8 2.0002 -2.2473 1.5209 7 6 2.5967 -3.1070 0.6718 8 8 3.4970 -2.7233 -0.0485 9 6 2.1579 -4.5133 0.6175 10 6 2.7774 -5.4061 -0.2635 11 6 2.3704 -6.7084 -0.3139 12 6 1.3347 -7.1500 0.5155 13 6 0.8955 -8.5575 0.4612 14 6 -0.0894 -9.0963 1.2109 15 6 -0.3195 -10.4355 0.9829 16 6 0.4651 -10.9959 0.0559 17 6 0.4118 -12.4416 -0.3663 18 8 -0.8449 -12.7089 -0.9918 19 14 1.7908 -12.7883 -1.5700 20 1 3.0967 -12.5104 -0.9199 21 1 1.7378 -14.2127 -1.9865 22 1 1.6367 -11.9180 -2.7633 23 16 1.5741 -9.7935 -0.5901 24 6 0.7115 -6.2565 1.3923 25 6 1.1216 -4.9553 1.4469 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.5739 1.7566 -0.0005 30 1 2.1205 2.2704 -0.8899 31 1 2.1206 2.2702 0.8901 32 1 2.1207 -1.9058 -1.5213 33 1 2.1206 -0.3642 -2.4112 34 1 3.5739 -0.8777 -1.5215 35 1 2.1208 -0.3645 2.4111 36 1 3.5741 -0.8786 1.5207 37 1 3.5770 -5.0650 -0.9043 38 1 2.8484 -7.3975 -0.9943 39 1 -0.6525 -8.5229 1.9323 40 1 -1.0783 -10.9918 1.5131 41 1 0.5249 -13.0803 0.5097 42 1 -1.0134 -12.1750 -1.7803 43 1 -0.0913 -6.5968 2.0296 44 1 0.6432 -4.2663 2.1273 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13308396_4858416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:38:27 Heat of formation + Delta-G solvation = -82.957232 kcal Electronic energy + Delta-G solvation = -25042.986926 eV Core-core repulsion = 21369.283260 eV Total energy + Delta-G solvation = -3673.703666 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 350.097 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.70002 -40.26405 -39.10959 -37.51977 -37.30350 -33.68038 -32.39580 -30.68857 -29.65327 -28.46173 -28.36293 -28.28393 -26.91568 -24.77200 -23.95325 -23.48207 -21.96394 -20.31574 -19.22048 -18.80793 -18.04659 -17.64430 -17.43924 -16.67426 -16.29667 -16.20031 -15.90274 -15.61088 -15.16664 -14.74814 -14.69607 -14.46188 -14.41651 -14.07411 -13.98837 -13.88789 -13.79328 -13.61848 -13.41817 -13.37697 -13.23899 -13.12591 -13.05198 -12.96476 -12.59384 -12.52097 -12.39963 -12.25444 -12.05665 -11.62832 -11.50393 -10.85786 -10.82712 -10.77284 -10.53062 -10.38344 -10.24794 -9.59496 -9.10296 -0.99443 0.14687 0.28769 0.33189 0.70953 1.09748 1.31799 1.36409 1.46761 1.51113 1.58851 1.82645 1.84669 1.89443 2.07860 2.56344 2.72665 3.36921 3.45085 3.65778 3.75094 3.77305 3.81105 4.15422 4.24539 4.27154 4.40565 4.54535 4.56324 4.60171 4.69778 4.74161 4.77400 4.80682 4.81835 4.82809 4.87382 4.88456 4.98340 5.04922 5.16129 5.21990 5.28090 5.34288 5.46127 5.52483 5.60509 5.63022 5.66117 6.60096 6.67899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.060 2.940 3 C -0.451 4.451 4 C -0.457 4.457 5 C -0.256 4.256 6 O -0.333 6.333 7 C 0.490 3.510 8 O -0.514 6.514 9 C -0.144 4.144 10 C -0.054 4.054 11 C -0.133 4.133 12 C 0.017 3.983 13 C -0.160 4.160 14 C -0.111 4.111 15 C -0.105 4.105 16 C -0.216 4.216 17 C -0.031 4.031 18 O -0.544 6.544 19 Si 0.912 3.088 20 H -0.246 1.246 21 H -0.239 1.239 22 H -0.240 1.240 23 S 0.090 5.910 24 C -0.114 4.114 25 C -0.052 4.052 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.134 0.866 36 H 0.073 0.927 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.169 0.831 40 H 0.162 0.838 41 H 0.140 0.860 42 H 0.390 0.610 43 H 0.163 0.837 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.282 0.172 2.371 4.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.252 2.748 3 C -0.560 4.560 4 C -0.562 4.562 5 C -0.374 4.374 6 O -0.248 6.248 7 C 0.337 3.663 8 O -0.405 6.405 9 C -0.145 4.145 10 C -0.072 4.072 11 C -0.152 4.152 12 C 0.015 3.985 13 C -0.277 4.277 14 C -0.142 4.142 15 C -0.135 4.135 16 C -0.334 4.334 17 C -0.145 4.145 18 O -0.351 6.351 19 Si 0.734 3.266 20 H -0.170 1.170 21 H -0.162 1.162 22 H -0.163 1.163 23 S 0.357 5.643 24 C -0.133 4.133 25 C -0.070 4.070 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.152 0.848 36 H 0.092 0.908 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.186 0.814 40 H 0.179 0.821 41 H 0.157 0.843 42 H 0.239 0.761 43 H 0.180 0.820 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.202 -0.385 0.974 1.594 hybrid contribution -0.746 0.532 0.641 1.118 sum -1.948 0.147 1.615 2.535 Atomic orbital electron populations 1.26131 1.20226 1.04510 1.05197 0.78788 0.66770 0.66032 0.63229 1.26082 1.06415 1.18000 1.05484 1.26556 1.06087 1.07016 1.16515 1.28711 1.05171 0.83224 1.20251 1.86454 1.58831 1.21917 1.57614 1.21349 0.80181 0.87275 0.77536 1.90837 1.29803 1.78556 1.41316 1.19326 1.01982 0.90166 1.03071 1.20959 0.98005 0.92393 0.95864 1.21012 0.97880 0.95935 1.00384 1.18529 0.94492 0.90171 0.95304 1.23049 1.03765 0.96298 1.04538 1.20717 0.97519 0.95264 1.00653 1.20239 1.00671 0.94599 0.98029 1.25220 1.02911 1.00557 1.04682 1.24304 0.94937 0.90886 1.04403 1.86516 1.36083 1.65770 1.46726 0.86022 0.77712 0.83185 0.79714 1.16979 1.16243 1.16324 1.84373 1.37993 1.00905 1.41012 1.21228 1.00925 0.92272 0.98882 1.21397 0.93219 0.96474 0.95882 0.90002 0.90810 0.91667 0.91223 0.90509 0.89898 0.93164 0.91694 0.92028 0.84762 0.90800 0.84413 0.84570 0.81354 0.82059 0.84251 0.76066 0.81962 0.82156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.06 8.65 113.37 0.98 2.05 16 2 Si 1.06 -2.73 12.12 68.60 0.83 -1.90 16 3 C -0.45 1.45 8.65 113.37 0.98 2.43 16 4 C -0.46 -1.93 7.10 113.37 0.80 -1.13 16 5 C -0.26 0.14 5.40 113.37 0.61 0.76 16 6 O -0.33 -1.08 9.15 -56.71 -0.52 -1.60 16 7 C 0.49 3.17 6.66 70.24 0.47 3.64 16 8 O -0.51 -5.39 12.04 19.80 0.24 -5.15 16 9 C -0.14 -0.59 5.88 -20.06 -0.12 -0.71 16 10 C -0.05 -0.22 9.53 22.27 0.21 0.00 16 11 C -0.13 -0.31 9.54 22.26 0.21 -0.10 16 12 C 0.02 0.02 5.88 -20.05 -0.12 -0.10 16 13 C -0.16 -0.10 6.37 23.98 0.15 0.05 16 14 C -0.11 0.24 9.64 21.42 0.21 0.45 16 15 C -0.11 0.20 10.03 21.14 0.21 0.42 16 16 C -0.22 0.17 5.71 24.67 0.14 0.31 16 17 C -0.03 0.08 2.96 71.24 0.21 0.29 16 18 O -0.54 0.82 12.88 -148.98 -1.92 -1.10 16 19 Si 0.91 -0.99 26.25 68.60 1.80 0.81 16 20 H -0.25 -0.20 7.11 99.48 0.71 0.51 16 21 H -0.24 -0.21 7.11 99.48 0.71 0.50 16 22 H -0.24 0.07 7.11 99.48 0.71 0.78 16 23 S 0.09 0.10 19.47 -56.49 -1.10 -1.00 16 24 C -0.11 0.22 9.48 22.26 0.21 0.43 16 25 C -0.05 0.02 9.56 22.27 0.21 0.23 16 26 H 0.08 -0.35 7.96 -2.39 -0.02 -0.36 16 27 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 28 H 0.06 -0.05 7.96 -2.39 -0.02 -0.07 16 29 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 30 H 0.08 -0.24 7.96 -2.39 -0.02 -0.26 16 31 H 0.08 -0.43 7.96 -2.39 -0.02 -0.45 16 32 H 0.05 0.37 6.28 -2.39 -0.01 0.35 16 33 H 0.06 0.18 7.96 -2.39 -0.02 0.16 16 34 H 0.06 0.44 7.42 -2.39 -0.02 0.42 16 35 H 0.13 -0.77 7.96 -2.39 -0.02 -0.79 16 36 H 0.07 0.09 7.52 -2.39 -0.02 0.07 16 37 H 0.14 0.56 7.64 -2.91 -0.02 0.53 16 38 H 0.14 0.07 7.26 -2.91 -0.02 0.04 16 39 H 0.17 -1.22 6.88 -2.91 -0.02 -1.24 16 40 H 0.16 -0.76 8.06 -2.91 -0.02 -0.78 16 41 H 0.14 -0.70 7.96 -2.39 -0.02 -0.72 16 42 H 0.39 -2.85 8.70 -74.06 -0.64 -3.49 16 43 H 0.16 -1.23 6.74 -2.91 -0.02 -1.25 16 44 H 0.16 -0.68 7.59 -2.91 -0.02 -0.70 16 Total: 0.00 -13.90 380.02 5.84 -8.06 By element: Atomic # 1 Polarization: -8.27 SS G_CDS: 1.13 Total: -7.14 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 5.38 Total: 9.02 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -2.20 Total: -7.85 kcal Atomic # 14 Polarization: -3.72 SS G_CDS: 2.63 Total: -1.09 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -1.10 Total: -1.00 kcal Total: -13.90 5.84 -8.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13308396_4858416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.899 kcal (2) G-P(sol) polarization free energy of solvation -13.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds