Wall clock time and date at job start Sat Mar 6 2021 05:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86299 * 109.46996 * 2 1 4 4 C 1.86299 * 109.46971 * 240.00046 * 2 1 3 5 5 C 1.86798 * 109.46871 * 120.00035 * 2 1 3 6 6 C 1.38238 * 119.99902 * 89.99871 * 5 2 1 7 7 C 1.38238 * 120.00072 * 180.02562 * 6 5 2 8 8 C 1.38241 * 119.99590 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99576 * 179.97438 * 8 7 6 10 10 O 1.45198 * 109.47036 * 89.99862 * 9 8 7 11 11 C 1.34773 * 117.00235 * 179.97438 * 10 9 8 12 12 O 1.21513 * 119.99429 * 0.02562 * 11 10 9 13 13 C 1.47409 * 120.00310 * 180.02562 * 11 10 9 14 14 C 1.39895 * 120.00864 * 359.71888 * 13 11 10 15 15 C 1.36539 * 119.99567 * 179.76464 * 14 13 11 16 16 C 1.39841 * 120.00659 * 0.51598 * 15 14 13 17 17 C 1.47539 * 119.99500 * 179.72024 * 16 15 14 18 18 C 1.34992 * 125.27472 * 0.02562 * 17 16 15 19 19 C 1.37788 * 114.70073 * 179.97438 * 18 17 16 20 20 C 1.33753 * 115.08053 * 359.97438 * 19 18 17 21 21 C 1.50703 * 125.11846 * 179.97438 * 20 19 18 22 22 O 1.42902 * 109.47024 * 65.00354 * 21 20 19 23 23 Si 1.86296 * 109.47154 * 184.99989 * 21 20 19 24 24 H 1.48503 * 109.46819 * 60.00422 * 23 21 20 25 25 H 1.48501 * 109.47297 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47347 * 300.00375 * 23 21 20 27 27 S 1.75862 * 109.76095 * 359.77572 * 20 19 18 28 28 C 1.39837 * 120.00918 * 359.74071 * 16 15 14 29 29 C 1.36541 * 120.00901 * 0.02562 * 28 16 15 30 30 C 1.38233 * 120.00269 * 0.24973 * 8 7 6 31 31 C 1.38230 * 120.00102 * 270.02233 * 5 2 1 32 32 H 1.09001 * 109.47306 * 299.99797 * 1 2 3 33 33 H 1.09000 * 109.47398 * 59.99687 * 1 2 3 34 34 H 1.08997 * 109.47535 * 180.02562 * 1 2 3 35 35 H 1.08996 * 109.46916 * 179.97438 * 3 2 1 36 36 H 1.08991 * 109.47456 * 300.00089 * 3 2 1 37 37 H 1.09001 * 109.46932 * 60.00528 * 3 2 1 38 38 H 1.08997 * 109.46934 * 299.99738 * 4 2 1 39 39 H 1.08991 * 109.46995 * 60.00209 * 4 2 1 40 40 H 1.09000 * 109.46605 * 179.97438 * 4 2 1 41 41 H 1.08002 * 119.99952 * 0.02562 * 6 5 2 42 42 H 1.07991 * 120.00062 * 179.97438 * 7 6 5 43 43 H 1.09002 * 109.47060 * 210.00086 * 9 8 7 44 44 H 1.09001 * 109.47380 * 330.00174 * 9 8 7 45 45 H 1.08003 * 120.00140 * 0.02562 * 14 13 11 46 46 H 1.08002 * 119.99810 * 180.26011 * 15 14 13 47 47 H 1.08000 * 122.65557 * 359.94269 * 18 17 16 48 48 H 1.07997 * 122.46163 * 179.97438 * 19 18 17 49 49 H 1.08997 * 109.47137 * 305.00725 * 21 20 19 50 50 H 0.96704 * 114.00187 * 59.99486 * 22 21 20 51 51 H 1.08005 * 119.99451 * 180.02562 * 28 16 15 52 52 H 1.08001 * 120.00217 * 180.02562 * 29 28 16 53 53 H 1.08003 * 119.99927 * 179.72604 * 30 8 7 54 54 H 1.08000 * 120.00286 * 359.97438 * 31 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4856 -0.8806 1.5252 6 6 2.7159 -2.2432 1.4910 7 6 3.1762 -2.8950 2.6198 8 6 3.4055 -2.1842 3.7831 9 6 3.9067 -2.8949 5.0139 10 8 5.3587 -2.8950 5.0152 11 6 5.9696 -3.4952 6.0558 12 8 5.3069 -4.0048 6.9376 13 6 7.4416 -3.5333 6.1242 14 6 8.2047 -2.9518 5.1061 15 6 9.5681 -2.9831 5.1721 16 6 10.2019 -3.6059 6.2520 17 6 11.6752 -3.6450 6.3200 18 6 12.5122 -3.1154 5.4028 19 6 13.8513 -3.2770 5.6842 20 6 14.1171 -3.9316 6.8199 21 6 15.4974 -4.2336 7.3438 22 8 16.1623 -3.0108 7.6673 23 14 15.3641 -5.2909 8.8719 24 1 14.6732 -6.5617 8.5357 25 1 16.7243 -5.5891 9.3878 26 1 14.5885 -4.5654 9.9097 27 16 12.6132 -4.3816 7.6127 28 6 9.4394 -4.1920 7.2671 29 6 8.0759 -4.1568 7.2040 30 6 3.1698 -0.8226 3.8190 31 6 2.7155 -0.1698 2.6883 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0276 0.0005 35 1 3.5739 1.7564 0.0005 36 1 2.1207 2.2703 -0.8899 37 1 2.1207 2.2702 0.8901 38 1 2.1206 -1.9059 -1.5211 39 1 2.1207 -0.3644 -2.4110 40 1 3.5740 -0.8778 -1.5213 41 1 2.5363 -2.7986 0.5823 42 1 3.3557 -3.9596 2.5932 43 1 3.5426 -2.3812 5.9036 44 1 3.5433 -3.9225 5.0134 45 1 7.7153 -2.4744 4.2700 46 1 10.1572 -2.5305 4.3882 47 1 12.1602 -2.6057 4.5181 48 1 14.6293 -2.9027 5.0353 49 1 16.0667 -4.7661 6.5820 50 1 15.7106 -2.4836 8.3405 51 1 9.9291 -4.6725 8.1012 52 1 7.4871 -4.6091 7.9883 53 1 3.3448 -0.2681 4.7291 54 1 2.5356 0.8948 2.7151 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13308396_9435856.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:03:51 Heat of formation + Delta-G solvation = -68.839486 kcal Electronic energy + Delta-G solvation = -33283.691098 eV Core-core repulsion = 28786.619823 eV Total energy + Delta-G solvation = -4497.071275 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 426.128 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.83872 -40.45933 -39.90479 -39.11206 -37.66921 -37.37018 -33.81622 -33.00316 -32.38724 -31.90135 -30.61485 -29.43587 -28.27877 -28.26170 -27.96551 -26.90376 -24.89258 -24.04133 -23.54704 -23.50204 -22.27318 -22.00298 -20.33050 -19.30681 -18.89522 -18.33340 -17.67301 -17.63364 -17.33148 -16.65941 -16.31761 -16.20389 -16.05857 -16.00521 -15.86145 -15.48354 -15.04553 -14.72557 -14.65696 -14.46531 -14.36827 -14.17110 -14.13829 -14.04135 -13.96224 -13.81146 -13.71244 -13.62389 -13.39717 -13.35159 -13.16692 -13.14452 -13.09673 -12.95169 -12.72598 -12.57595 -12.40077 -12.26707 -12.11745 -12.07763 -11.82976 -11.75992 -11.51246 -10.91710 -10.86014 -10.78802 -10.74384 -10.53375 -10.28253 -9.82271 -9.71521 -9.59789 -9.13185 -1.03854 0.08166 0.10530 0.25529 0.32498 0.50583 0.70369 1.09564 1.27860 1.35658 1.46811 1.54554 1.79135 1.84120 1.84811 2.03826 2.13391 2.67375 2.67768 2.92490 3.32609 3.43815 3.51611 3.64517 3.73416 3.74045 3.74681 3.77647 4.08463 4.11631 4.19608 4.20452 4.28141 4.39180 4.52017 4.52648 4.55518 4.58105 4.69284 4.85300 4.85668 4.85993 4.90166 4.91145 4.91502 4.91993 4.95169 4.96958 5.01387 5.11396 5.14562 5.17307 5.24006 5.27226 5.39231 5.44849 5.55188 5.57769 5.60701 5.62067 5.69196 5.72395 6.09910 6.50789 6.59891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.127 2.873 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.371 4.371 6 C -0.101 4.101 7 C -0.119 4.119 8 C -0.105 4.105 9 C 0.109 3.891 10 O -0.346 6.346 11 C 0.511 3.489 12 O -0.536 6.536 13 C -0.146 4.146 14 C -0.047 4.047 15 C -0.113 4.113 16 C 0.021 3.979 17 C -0.161 4.161 18 C -0.110 4.110 19 C -0.105 4.105 20 C -0.215 4.215 21 C -0.032 4.032 22 O -0.544 6.544 23 Si 0.911 3.089 24 H -0.246 1.246 25 H -0.239 1.239 26 H -0.240 1.240 27 S 0.093 5.907 28 C -0.132 4.132 29 C -0.050 4.050 30 C -0.119 4.119 31 C -0.101 4.101 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.142 0.858 42 H 0.127 0.873 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.156 0.844 46 H 0.163 0.837 47 H 0.169 0.831 48 H 0.162 0.838 49 H 0.140 0.860 50 H 0.390 0.610 51 H 0.139 0.861 52 H 0.139 0.861 53 H 0.127 0.873 54 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.425 2.651 -4.472 5.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.314 2.686 3 C -0.569 4.569 4 C -0.569 4.569 5 C -0.410 4.410 6 C -0.119 4.119 7 C -0.137 4.137 8 C -0.105 4.105 9 C 0.036 3.964 10 O -0.262 6.262 11 C 0.358 3.642 12 O -0.428 6.428 13 C -0.147 4.147 14 C -0.065 4.065 15 C -0.133 4.133 16 C 0.020 3.980 17 C -0.278 4.278 18 C -0.140 4.140 19 C -0.136 4.136 20 C -0.333 4.333 21 C -0.146 4.146 22 O -0.351 6.351 23 Si 0.733 3.267 24 H -0.170 1.170 25 H -0.162 1.162 26 H -0.163 1.163 27 S 0.360 5.640 28 C -0.151 4.151 29 C -0.068 4.068 30 C -0.137 4.137 31 C -0.119 4.119 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.159 0.841 42 H 0.145 0.855 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.173 0.827 46 H 0.180 0.820 47 H 0.186 0.814 48 H 0.180 0.820 49 H 0.158 0.842 50 H 0.239 0.761 51 H 0.157 0.843 52 H 0.157 0.843 53 H 0.145 0.855 54 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.240 0.954 -2.470 2.924 hybrid contribution -0.342 0.711 -0.533 0.952 sum 0.898 1.665 -3.003 3.549 Atomic orbital electron populations 1.26300 1.21677 1.04453 1.04575 0.77184 0.65124 0.64713 0.61610 1.26269 1.06481 1.19273 1.04891 1.26269 1.06481 1.08475 1.15692 1.28091 1.02076 0.99596 1.11209 1.21398 0.97190 0.95194 0.98116 1.21367 0.99081 1.00435 0.92810 1.19536 1.01928 0.94640 0.94412 1.21943 0.75794 1.01483 0.97180 1.86613 1.23809 1.70853 1.44960 1.21411 0.89624 0.74277 0.78920 1.90845 1.67431 1.44844 1.39633 1.19252 0.88401 1.07426 0.99661 1.21326 0.93841 0.94436 0.96903 1.21209 0.94215 0.99633 0.98241 1.18538 0.89466 0.95420 0.94623 1.23032 0.95575 1.08564 1.00650 1.20724 0.92156 1.00592 1.00567 1.20236 0.97054 0.99454 0.96809 1.25229 0.98561 1.08412 1.01081 1.24309 0.88709 0.93088 1.08464 1.86519 1.51357 1.33633 1.63578 0.86027 0.82772 0.80106 0.77775 1.16952 1.16215 1.16283 1.84365 0.97650 1.57352 1.24621 1.21021 0.93239 1.01373 0.99460 1.20961 0.94623 0.94925 0.96313 1.21368 0.99091 0.93529 0.99705 1.21396 0.97215 1.00826 0.92457 0.91433 0.90651 0.91432 0.91197 0.90637 0.90914 0.90910 0.90641 0.91197 0.84063 0.85485 0.90106 0.90111 0.82679 0.81950 0.81394 0.82042 0.84238 0.76071 0.84286 0.84290 0.85477 0.84062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.87 8.65 113.37 0.98 2.85 16 2 Si 1.13 -7.19 12.32 68.60 0.85 -6.35 16 3 C -0.46 2.34 8.53 113.37 0.97 3.31 16 4 C -0.46 2.34 8.53 113.37 0.97 3.31 16 5 C -0.37 0.46 4.59 22.27 0.10 0.56 16 6 C -0.10 -0.01 9.29 22.27 0.21 0.20 16 7 C -0.12 -0.30 9.70 22.27 0.22 -0.08 16 8 C -0.11 -0.41 5.52 -19.86 -0.11 -0.52 16 9 C 0.11 0.52 5.60 71.24 0.40 0.92 16 10 O -0.35 -2.25 9.44 -56.84 -0.54 -2.79 16 11 C 0.51 4.38 7.89 70.24 0.55 4.93 16 12 O -0.54 -7.42 16.12 19.79 0.32 -7.10 16 13 C -0.15 -0.72 5.88 -20.06 -0.12 -0.84 16 14 C -0.05 -0.03 9.56 22.27 0.21 0.19 16 15 C -0.11 0.17 9.48 22.26 0.21 0.38 16 16 C 0.02 0.02 5.88 -20.05 -0.12 -0.09 16 17 C -0.16 -0.08 6.37 23.98 0.15 0.07 16 18 C -0.11 0.25 9.64 21.42 0.21 0.45 16 19 C -0.11 0.22 10.03 21.14 0.21 0.43 16 20 C -0.22 0.21 5.71 24.67 0.14 0.35 16 21 C -0.03 0.09 2.96 71.24 0.21 0.30 16 22 O -0.54 0.88 12.88 -148.98 -1.92 -1.04 16 23 Si 0.91 -1.14 26.25 68.60 1.80 0.66 16 24 H -0.25 -0.15 7.11 99.48 0.71 0.55 16 25 H -0.24 -0.17 7.11 99.48 0.71 0.53 16 26 H -0.24 0.12 7.11 99.48 0.71 0.83 16 27 S 0.09 0.08 19.48 -56.49 -1.10 -1.02 16 28 C -0.13 -0.29 9.54 22.26 0.21 -0.08 16 29 C -0.05 -0.21 9.53 22.27 0.21 0.00 16 30 C -0.12 -0.30 9.70 22.27 0.22 -0.08 16 31 C -0.10 -0.01 9.29 22.27 0.21 0.20 16 32 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 33 H 0.07 -0.35 7.96 -2.39 -0.02 -0.36 16 34 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 35 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 36 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 37 H 0.07 -0.39 7.69 -2.39 -0.02 -0.41 16 38 H 0.07 -0.39 7.68 -2.39 -0.02 -0.41 16 39 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 40 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 41 H 0.14 -0.61 7.43 -2.91 -0.02 -0.63 16 42 H 0.13 0.04 8.06 -2.92 -0.02 0.01 16 43 H 0.08 0.36 8.08 -2.39 -0.02 0.34 16 44 H 0.08 0.36 8.08 -2.39 -0.02 0.34 16 45 H 0.16 -0.34 7.59 -2.91 -0.02 -0.36 16 46 H 0.16 -1.15 6.74 -2.91 -0.02 -1.17 16 47 H 0.17 -1.21 6.88 -2.91 -0.02 -1.23 16 48 H 0.16 -0.78 8.06 -2.91 -0.02 -0.80 16 49 H 0.14 -0.72 7.96 -2.39 -0.02 -0.74 16 50 H 0.39 -2.89 8.70 -74.05 -0.64 -3.53 16 51 H 0.14 0.01 7.26 -2.91 -0.02 -0.01 16 52 H 0.14 0.58 7.64 -2.91 -0.02 0.56 16 53 H 0.13 0.03 8.06 -2.91 -0.02 0.01 16 54 H 0.14 -0.61 7.43 -2.91 -0.02 -0.63 16 Total: 0.00 -16.67 468.75 6.68 -9.99 By element: Atomic # 1 Polarization: -10.14 SS G_CDS: 1.03 Total: -9.11 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 6.24 Total: 16.75 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -2.14 Total: -10.93 kcal Atomic # 14 Polarization: -8.33 SS G_CDS: 2.65 Total: -5.69 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -1.10 Total: -1.02 kcal Total: -16.67 6.68 -9.99 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13308396_9435856.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.848 kcal (2) G-P(sol) polarization free energy of solvation -16.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds