Wall clock time and date at job start Sat Mar 6 2021 05:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35987 * 116.99925 * 2 1 4 4 C 1.38559 * 120.06997 * 0.27207 * 3 2 1 5 5 C 1.38272 * 120.01855 * 180.27582 * 4 3 2 6 6 C 1.50706 * 119.92448 * 179.72414 * 5 4 3 7 7 O 1.42895 * 109.46857 * 299.72731 * 6 5 4 8 8 Si 1.86291 * 109.47341 * 179.72207 * 6 5 4 9 9 C 1.38215 * 120.15787 * 359.45087 * 5 4 3 10 10 C 1.38379 * 120.12814 * 0.27074 * 9 5 4 11 11 Cl 1.73608 * 120.00975 * 180.02562 * 10 9 5 12 12 C 1.38617 * 119.98173 * 0.02562 * 10 9 5 13 13 O 1.36023 * 120.07800 * 179.97438 * 12 10 9 14 14 C 1.42901 * 116.99970 * 90.00196 * 13 12 10 15 15 C 1.52997 * 109.47542 * 89.99818 * 14 13 12 16 16 C 1.50699 * 109.46885 * 210.00230 * 14 13 12 17 17 O 1.20829 * 119.99982 * 359.97438 * 16 14 13 18 18 O 1.34231 * 120.00119 * 179.97438 * 16 14 13 19 19 C 1.45202 * 117.00016 * 179.97438 * 18 16 14 20 20 C 1.52998 * 109.47041 * 179.97438 * 19 18 16 21 21 H 1.09000 * 112.85185 * 316.20109 * 20 19 18 22 22 C 1.53784 * 113.61366 * 87.50114 * 20 19 18 23 23 C 1.53785 * 87.08154 * 89.11515 * 22 20 19 24 24 O 1.42897 * 113.69132 * 270.87398 * 23 22 20 25 25 C 1.42905 * 114.00000 * 162.74325 * 24 23 22 26 26 C 1.52997 * 113.61561 * 139.97812 * 23 22 20 27 27 F 1.39901 * 109.47345 * 327.20642 * 26 23 22 28 28 F 1.39902 * 109.46871 * 87.19863 * 26 23 22 29 29 F 1.39896 * 109.47496 * 207.20203 * 26 23 22 30 30 C 1.53781 * 113.61752 * 184.99643 * 20 19 18 31 31 H 1.09001 * 109.47541 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47067 * 300.00298 * 1 2 3 33 33 H 1.09004 * 109.46738 * 60.00044 * 1 2 3 34 34 H 1.08002 * 119.99254 * 0.02562 * 4 3 2 35 35 H 1.09007 * 109.46454 * 59.72245 * 6 5 4 36 36 H 0.96697 * 114.00379 * 299.99601 * 7 6 5 37 37 H 1.48499 * 110.00081 * 180.02562 * 8 6 5 38 38 H 1.48502 * 110.00688 * 301.32288 * 8 6 5 39 39 H 1.07996 * 119.94074 * 180.25696 * 9 5 4 40 40 H 1.09003 * 109.46906 * 329.99176 * 14 13 12 41 41 H 1.09001 * 109.46978 * 60.00256 * 15 14 13 42 42 H 1.09000 * 109.46970 * 179.97438 * 15 14 13 43 43 H 1.08991 * 109.47096 * 299.99795 * 15 14 13 44 44 H 1.09000 * 109.47043 * 299.99391 * 19 18 16 45 45 H 1.09005 * 109.47171 * 59.99914 * 19 18 16 46 46 H 1.08997 * 113.61726 * 203.66486 * 22 20 19 47 47 H 1.08999 * 113.61544 * 334.57206 * 22 20 19 48 48 H 1.09006 * 109.46896 * 64.83785 * 25 24 23 49 49 H 1.08996 * 109.47082 * 184.84348 * 25 24 23 50 50 H 1.09001 * 109.46932 * 304.84589 * 25 24 23 51 51 H 1.09003 * 113.60965 * 25.43399 * 30 20 19 52 52 H 1.09001 * 113.61562 * 156.33481 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2931 2.3746 0.0057 5 6 1.9219 3.6061 -0.0001 6 6 1.1006 4.8696 -0.0002 7 8 0.2762 4.9017 -1.1669 8 14 2.2346 6.3476 -0.0001 9 6 3.3021 3.6810 -0.0001 10 6 4.0605 2.5236 0.0001 11 17 5.7938 2.6214 0.0007 12 6 3.4359 1.2862 -0.0004 13 8 4.1796 0.1472 -0.0008 14 6 4.5342 -0.3965 1.2723 15 6 3.4530 -1.3791 1.7265 16 6 5.8531 -1.1170 1.1610 17 8 6.4299 -1.1608 0.1002 18 8 6.3871 -1.7100 2.2403 19 6 7.6594 -2.3860 2.0592 20 6 8.1066 -2.9960 3.3891 21 1 7.9665 -2.3205 4.2331 22 6 7.5575 -4.4115 3.6332 23 6 8.8092 -4.9366 2.9103 24 8 8.6451 -5.0633 1.4965 25 6 9.8746 -5.1677 0.7756 26 6 9.4083 -6.1890 3.5535 27 9 9.2076 -6.1441 4.9373 28 9 8.7851 -7.3262 3.0286 29 9 10.7798 -6.2418 3.2826 30 6 9.5053 -3.6329 3.3354 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 0.2146 2.3193 0.0106 35 1 0.4717 4.8941 0.8899 36 1 0.7700 4.8824 -1.9981 37 1 1.4368 7.6000 0.0005 38 1 3.1194 6.3090 1.1920 39 1 3.7895 4.6447 -0.0004 40 1 4.6212 0.4101 2.0003 41 1 3.3661 -2.1857 0.9984 42 1 3.7238 -1.7941 2.6973 43 1 2.4991 -0.8580 1.8070 44 1 7.5488 -3.1755 1.3159 45 1 8.4067 -1.6689 1.7192 46 1 7.5138 -4.6873 4.6868 47 1 6.6282 -4.6170 3.1019 48 1 10.3813 -6.0919 1.0537 49 1 9.6688 -5.1739 -0.2947 50 1 10.5114 -4.3170 1.0183 51 1 10.1484 -3.2097 2.5638 52 1 9.9941 -3.6958 4.3077 There are 81 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 81 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13428716_17321610.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:44:10 Heat of formation + Delta-G solvation = -310.070785 kcal Electronic energy + Delta-G solvation = -44997.118558 eV Core-core repulsion = 38542.940635 eV Total energy + Delta-G solvation = -6454.177923 eV No. of doubly occupied orbitals = 81 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 455.118 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -51.26606 -48.79639 -48.73922 -42.16897 -41.75320 -41.10708 -39.47666 -39.18295 -37.92415 -37.68758 -36.94046 -36.87674 -33.49919 -31.58799 -31.37288 -30.65516 -28.54398 -28.27823 -27.57177 -26.79984 -26.71604 -25.58482 -23.66359 -23.41167 -22.90903 -22.06027 -20.68638 -19.81738 -19.80213 -19.55735 -19.26739 -18.95527 -18.52341 -18.31926 -18.04831 -17.63246 -17.43651 -17.17105 -16.89510 -16.52122 -16.27902 -16.11967 -15.97145 -15.92699 -15.74051 -15.67339 -15.61125 -15.49483 -15.37790 -15.17501 -14.97158 -14.91074 -14.79599 -14.58683 -14.31746 -14.23632 -14.10026 -13.91636 -13.70141 -13.34204 -13.32609 -13.22737 -13.17378 -12.94519 -12.81441 -12.70272 -12.58328 -12.47311 -12.38080 -12.15241 -12.05769 -11.92003 -11.85580 -11.72624 -11.68977 -11.53878 -11.20131 -10.82816 -10.52959 -9.89115 -9.43313 -4.99804 -0.39244 -0.03718 0.81478 0.98331 1.12160 1.25743 1.51676 1.61751 1.94197 2.06199 2.09989 2.19105 2.53585 2.58253 2.61611 2.86847 3.19963 3.27977 3.33005 3.41039 3.55117 3.56174 3.67719 3.69414 3.77041 3.83878 3.88943 4.00998 4.02476 4.18773 4.20871 4.24688 4.32076 4.33918 4.37941 4.43969 4.44701 4.49711 4.58444 4.59963 4.66904 4.67889 4.71665 4.75710 4.76292 4.81530 4.82212 4.97165 5.07571 5.14370 5.21528 5.27346 5.68700 5.84988 6.29518 6.58773 6.72184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.312 6.312 3 C 0.132 3.868 4 C -0.163 4.163 5 C -0.060 4.060 6 C -0.064 4.064 7 O -0.548 6.548 8 Si 0.755 3.245 9 C -0.135 4.135 10 C -0.020 4.020 11 Cl -0.049 7.049 12 C 0.050 3.950 13 O -0.306 6.306 14 C 0.100 3.900 15 C -0.159 4.159 16 C 0.466 3.534 17 O -0.515 6.515 18 O -0.345 6.345 19 C 0.075 3.925 20 C -0.091 4.091 21 H 0.126 0.874 22 C -0.111 4.111 23 C 0.030 3.970 24 O -0.349 6.349 25 C 0.006 3.994 26 C 0.434 3.566 27 F -0.174 7.174 28 F -0.188 7.188 29 F -0.185 7.185 30 C -0.135 4.135 31 H 0.118 0.882 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.162 0.838 35 H 0.125 0.875 36 H 0.397 0.603 37 H -0.292 1.292 38 H -0.281 1.281 39 H 0.157 0.843 40 H 0.114 0.886 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.132 0.868 47 H 0.091 0.909 48 H 0.047 0.953 49 H 0.108 0.892 50 H 0.069 0.931 51 H 0.102 0.898 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.998 3.483 2.686 5.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.225 6.225 3 C 0.084 3.916 4 C -0.182 4.182 5 C -0.061 4.061 6 C -0.174 4.174 7 O -0.356 6.356 8 Si 0.661 3.339 9 C -0.154 4.154 10 C -0.047 4.047 11 Cl -0.020 7.020 12 C 0.005 3.995 13 O -0.223 6.223 14 C 0.044 3.956 15 C -0.216 4.216 16 C 0.309 3.691 17 O -0.402 6.402 18 O -0.261 6.261 19 C 0.002 3.998 20 C -0.109 4.109 21 H 0.144 0.856 22 C -0.148 4.148 23 C -0.012 4.012 24 O -0.267 6.267 25 C -0.090 4.090 26 C 0.379 3.621 27 F -0.155 7.155 28 F -0.170 7.170 29 F -0.166 7.166 30 C -0.172 4.172 31 H 0.136 0.864 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.180 0.820 35 H 0.142 0.858 36 H 0.248 0.752 37 H -0.220 1.220 38 H -0.207 1.207 39 H 0.174 0.826 40 H 0.131 0.869 41 H 0.082 0.918 42 H 0.117 0.883 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.150 0.850 47 H 0.110 0.890 48 H 0.066 0.934 49 H 0.126 0.874 50 H 0.088 0.912 51 H 0.120 0.880 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.859 3.830 2.987 5.636 hybrid contribution 0.425 -0.894 0.191 1.008 sum -2.434 2.936 3.178 4.964 Atomic orbital electron populations 1.23470 0.75915 1.05960 1.02761 1.86215 1.23551 1.25109 1.87602 1.19201 0.90334 0.86223 0.95808 1.21314 1.01760 0.90008 1.05113 1.20233 0.92581 0.96144 0.97132 1.25077 0.99630 1.00615 0.92119 1.86488 1.36183 1.96730 1.16209 0.93711 0.78683 0.74098 0.87420 1.20905 0.93025 0.97206 1.04230 1.21076 0.85935 0.93627 1.04089 1.98416 1.08551 1.98465 1.96586 1.17727 0.87279 0.84965 1.09539 1.86224 1.70079 1.38533 1.27427 1.21850 0.89910 0.97608 0.86266 1.22232 0.97749 0.98793 1.02855 1.23520 0.86921 0.76725 0.81965 1.90705 1.62113 1.57064 1.30349 1.86401 1.38049 1.64174 1.37520 1.23130 0.81799 0.96285 0.98571 1.22045 0.95131 0.96280 0.97479 0.85570 1.23363 0.95293 0.94176 1.01975 1.24269 1.02517 0.89830 0.84606 1.88082 1.31277 1.93216 1.14089 1.23253 0.86049 1.01641 0.98010 1.21468 0.76337 0.86927 0.77324 1.93173 1.94689 1.96543 1.31122 1.93188 1.82465 1.54876 1.86448 1.93181 1.33170 1.96863 1.93432 1.23665 0.96903 0.91210 1.05451 0.86354 0.90906 0.91437 0.82037 0.85790 0.75229 1.21978 1.20746 0.82595 0.86880 0.91839 0.88276 0.89441 0.90280 0.90595 0.85004 0.89002 0.93385 0.87399 0.91238 0.88002 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.09 9.81 113.37 1.11 1.03 16 2 O -0.31 -0.21 8.18 -79.54 -0.65 -0.86 16 3 C 0.13 0.19 6.54 22.57 0.15 0.34 16 4 C -0.16 0.39 8.60 22.35 0.19 0.58 16 5 C -0.06 0.18 5.39 -19.86 -0.11 0.07 16 6 C -0.06 0.30 2.82 71.24 0.20 0.51 16 7 O -0.55 2.34 12.77 -148.98 -1.90 0.44 16 8 Si 0.76 -3.31 29.78 68.60 2.04 -1.26 16 9 C -0.14 0.17 8.45 22.30 0.19 0.35 16 10 C -0.02 -0.07 6.33 22.39 0.14 0.08 16 11 Cl -0.05 -0.26 28.50 -2.72 -0.08 -0.34 16 12 C 0.05 0.25 5.56 22.58 0.13 0.37 16 13 O -0.31 -2.61 8.48 -67.37 -0.57 -3.18 16 14 C 0.10 0.40 3.30 29.85 0.10 0.50 16 15 C -0.16 0.03 9.03 71.98 0.65 0.68 16 16 C 0.47 3.51 7.33 71.24 0.52 4.03 16 17 O -0.51 -7.55 16.25 28.39 0.46 -7.09 16 18 O -0.34 -1.10 10.12 -51.42 -0.52 -1.62 16 19 C 0.08 0.08 5.05 71.98 0.36 0.45 16 20 C -0.09 0.41 4.21 -10.27 -0.04 0.36 16 21 H 0.13 -0.96 8.14 -2.39 -0.02 -0.98 16 22 C -0.11 0.36 6.89 31.12 0.21 0.57 16 23 C 0.03 -0.02 0.84 -10.27 -0.01 -0.02 16 24 O -0.35 -0.94 8.37 -148.98 -1.25 -2.19 16 25 C 0.01 0.00 10.30 113.37 1.17 1.16 16 26 C 0.43 1.11 2.52 71.98 0.18 1.29 16 27 F -0.17 -0.30 15.81 44.97 0.71 0.41 16 28 F -0.19 -1.29 17.10 44.97 0.77 -0.53 16 29 F -0.19 -0.60 15.39 44.97 0.69 0.09 16 30 C -0.14 0.72 6.51 31.12 0.20 0.92 16 31 H 0.12 -1.08 8.14 -2.39 -0.02 -1.10 16 32 H 0.07 -0.68 7.65 -2.39 -0.02 -0.70 16 33 H 0.07 -0.52 7.68 -2.38 -0.02 -0.54 16 34 H 0.16 -0.94 6.30 -2.91 -0.02 -0.96 16 35 H 0.12 -0.66 7.96 -2.38 -0.02 -0.68 16 36 H 0.40 -4.53 8.70 -74.06 -0.64 -5.17 16 37 H -0.29 -0.85 7.11 99.48 0.71 -0.14 16 38 H -0.28 -0.09 7.11 99.48 0.71 0.61 16 39 H 0.16 -0.70 4.87 -2.91 -0.01 -0.71 16 40 H 0.11 0.06 7.91 -2.39 -0.02 0.04 16 41 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 42 H 0.10 -0.38 8.11 -2.39 -0.02 -0.40 16 43 H 0.09 -0.11 6.28 -2.39 -0.02 -0.13 16 44 H 0.08 0.35 6.12 -2.39 -0.01 0.33 16 45 H 0.08 0.08 8.13 -2.38 -0.02 0.07 16 46 H 0.13 -0.81 7.02 -2.39 -0.02 -0.83 16 47 H 0.09 -0.14 8.10 -2.39 -0.02 -0.16 16 48 H 0.05 0.02 6.69 -2.38 -0.02 0.00 16 49 H 0.11 -0.24 8.14 -2.39 -0.02 -0.26 16 50 H 0.07 -0.27 6.55 -2.39 -0.02 -0.28 16 51 H 0.10 -0.64 6.63 -2.39 -0.02 -0.66 16 52 H 0.13 -1.07 8.04 -2.39 -0.02 -1.09 16 Total: 0.00 -21.93 449.75 5.47 -16.46 By element: Atomic # 1 Polarization: -14.01 SS G_CDS: 0.41 Total: -13.60 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 5.35 Total: 13.27 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -4.43 Total: -14.51 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 2.17 Total: -0.03 kcal Atomic # 14 Polarization: -3.31 SS G_CDS: 2.04 Total: -1.26 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -0.08 Total: -0.34 kcal Total: -21.93 5.47 -16.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13428716_17321610.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -293.609 kcal (2) G-P(sol) polarization free energy of solvation -21.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -315.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -310.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds