Wall clock time and date at job start Sat Mar 6 2021 04:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39614 * 120.07247 * 2 1 4 4 C 1.47728 * 120.14802 * 0.02562 * 3 2 1 5 5 O 1.21464 * 120.00022 * 353.84407 * 4 3 2 6 6 O 1.34715 * 119.99877 * 173.84247 * 4 3 2 7 7 C 1.45192 * 117.00041 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47289 * 180.02562 * 7 6 4 9 9 H 1.08997 * 112.84876 * 316.19892 * 8 7 6 10 10 C 1.53777 * 113.61247 * 87.50291 * 8 7 6 11 11 C 1.53783 * 87.08033 * 139.98485 * 10 8 7 12 12 H 1.08994 * 113.69270 * 89.12986 * 11 10 8 13 13 O 1.42906 * 113.61511 * 220.02139 * 11 10 8 14 14 C 1.53780 * 113.61340 * 185.00008 * 8 7 6 15 15 C 1.39653 * 119.70022 * 179.97438 * 3 2 1 16 16 C 1.37914 * 119.84713 * 0.02562 * 15 3 2 17 17 C 1.50701 * 119.92683 * 180.02562 * 16 15 3 18 18 O 1.42895 * 109.47092 * 300.00565 * 17 16 15 19 19 Si 1.86293 * 109.47486 * 179.97438 * 17 16 15 20 20 C 1.38393 * 120.15270 * 359.97438 * 16 15 3 21 21 C 1.37959 * 120.08232 * 179.72182 * 2 1 3 22 22 H 1.09003 * 109.47311 * 83.17251 * 1 2 3 23 23 H 1.08994 * 109.47940 * 323.16532 * 1 2 3 24 24 H 1.09010 * 109.46992 * 203.16711 * 1 2 3 25 25 H 1.08994 * 109.47224 * 300.00299 * 7 6 4 26 26 H 1.09007 * 109.47327 * 59.99928 * 7 6 4 27 27 H 1.09005 * 113.61605 * 254.52909 * 10 8 7 28 28 H 1.09003 * 113.61778 * 25.43636 * 10 8 7 29 29 H 0.96701 * 113.99708 * 277.49927 * 13 11 10 30 30 H 1.08993 * 113.61723 * 334.56533 * 14 8 7 31 31 H 1.08999 * 113.61142 * 105.47369 * 14 8 7 32 32 H 1.08001 * 120.07444 * 179.97438 * 15 3 2 33 33 H 1.09001 * 109.46681 * 59.99844 * 17 16 15 34 34 H 0.96703 * 114.00038 * 299.98820 * 18 17 16 35 35 H 1.48499 * 109.99879 * 58.68636 * 19 17 16 36 36 H 1.48503 * 110.00167 * 180.02562 * 19 17 16 37 37 H 1.08002 * 119.84913 * 180.02562 * 20 16 15 38 38 H 1.08007 * 119.92205 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2066 1.2082 0.0000 4 6 1.4728 2.4904 0.0006 5 8 0.2634 2.4981 -0.1118 6 8 2.1451 3.6511 0.1257 7 6 1.3595 4.8721 0.1176 8 6 2.2892 6.0778 0.2686 9 1 3.0538 5.9298 1.0312 10 6 2.8425 6.6002 -1.0678 11 6 2.6352 8.0179 -0.5092 12 1 3.4946 8.4023 0.0399 13 8 2.1328 8.9453 -1.4735 14 6 1.5450 7.4176 0.3941 15 6 3.6031 1.1991 0.0005 16 6 4.2816 -0.0015 0.0005 17 6 5.7886 -0.0134 0.0017 18 8 6.2711 0.6571 -1.1643 19 14 6.3958 -1.7746 0.0022 20 6 3.5819 -1.1955 0.0005 21 6 2.1985 -1.1938 0.0058 22 1 -0.3634 0.1222 -1.0204 23 1 -0.3635 0.8224 0.6160 24 1 -0.3633 -0.9449 0.4043 25 1 0.8163 4.9483 -0.8243 26 1 0.6505 4.8535 0.9454 27 1 3.8890 6.3461 -1.2363 28 1 2.2070 6.3706 -1.9231 29 1 2.8138 9.3262 -2.0447 30 1 0.5549 7.4115 -0.0615 31 1 1.5440 7.8234 1.4058 32 1 4.1503 2.1302 0.0001 33 1 6.1552 0.4972 0.8922 34 1 5.9834 0.2562 -1.9959 35 1 5.8767 -2.4911 -1.1904 36 1 7.8806 -1.7999 0.0040 37 1 4.1183 -2.1329 0.0010 38 1 1.6585 -2.1291 0.0108 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_13429372_11354868.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:55:43 Heat of formation + Delta-G solvation = -112.835059 kcal Electronic energy + Delta-G solvation = -21538.255860 eV Core-core repulsion = 18120.307299 eV Total energy + Delta-G solvation = -3417.948561 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.80885 -40.64703 -40.01123 -38.02368 -37.34766 -36.00528 -33.96722 -32.68855 -29.76493 -29.14907 -26.82698 -25.82143 -25.13790 -23.65215 -22.67077 -21.45357 -20.60041 -18.88453 -18.66138 -18.43007 -17.46892 -17.40181 -16.86004 -16.56513 -16.31524 -16.14967 -15.83577 -15.31438 -15.16563 -14.87504 -14.52385 -14.07427 -14.01366 -13.58902 -13.53157 -13.32082 -13.02622 -12.98986 -12.88644 -12.76936 -12.43530 -12.15318 -12.12324 -11.74597 -11.68590 -11.25291 -11.12596 -10.80997 -10.67503 -10.17949 -9.77614 -5.03627 -0.40671 0.15489 1.19333 1.49533 1.52155 1.57915 1.90088 2.57058 3.12453 3.25800 3.36032 3.46054 3.49341 3.55702 3.69850 3.79730 3.83825 3.84273 4.05760 4.13826 4.19587 4.26448 4.38379 4.43055 4.57476 4.59540 4.69692 4.70180 4.70715 4.80471 4.82352 4.89826 5.03768 5.05536 5.20246 5.21209 5.26023 5.34764 5.56078 5.72493 6.32342 6.65128 6.77012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.010 4.010 3 C -0.132 4.132 4 C 0.508 3.492 5 O -0.498 6.498 6 O -0.351 6.351 7 C 0.081 3.919 8 C -0.111 4.111 9 H 0.107 0.893 10 C -0.164 4.164 11 C 0.076 3.924 12 H 0.085 0.915 13 O -0.560 6.560 14 C -0.120 4.120 15 C -0.030 4.030 16 C -0.141 4.141 17 C -0.073 4.073 18 O -0.528 6.528 19 Si 0.684 3.316 20 C -0.075 4.075 21 C -0.128 4.128 22 H 0.080 0.920 23 H 0.094 0.906 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.380 0.620 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.142 0.858 33 H 0.121 0.879 34 H 0.376 0.624 35 H -0.259 1.259 36 H -0.255 1.255 37 H 0.134 0.866 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.749 -1.898 1.811 3.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.011 4.011 3 C -0.133 4.133 4 C 0.354 3.646 5 O -0.388 6.388 6 O -0.268 6.268 7 C 0.007 3.993 8 C -0.129 4.129 9 H 0.125 0.875 10 C -0.202 4.202 11 C 0.017 3.983 12 H 0.103 0.897 13 O -0.366 6.366 14 C -0.157 4.157 15 C -0.048 4.048 16 C -0.141 4.141 17 C -0.183 4.183 18 O -0.335 6.335 19 Si 0.585 3.415 20 C -0.093 4.093 21 C -0.146 4.146 22 H 0.098 0.902 23 H 0.112 0.888 24 H 0.085 0.915 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.109 0.891 29 H 0.228 0.772 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.159 0.841 33 H 0.139 0.861 34 H 0.224 0.776 35 H -0.184 1.184 36 H -0.180 1.180 37 H 0.151 0.849 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.556 -2.222 2.091 3.425 hybrid contribution 0.304 0.656 -1.368 1.547 sum 1.859 -1.566 0.722 2.536 Atomic orbital electron populations 1.21173 0.89551 1.03649 1.03968 1.20137 0.97118 0.91184 0.92642 1.19002 0.93515 0.90085 1.10722 1.21116 0.85922 0.84415 0.73145 1.90816 1.14878 1.87619 1.45476 1.86531 1.41860 1.14894 1.83488 1.23095 0.93207 0.80001 1.02956 1.22370 0.99016 0.91960 0.99589 0.87487 1.23794 1.02393 0.96681 0.97348 1.23289 0.96869 0.87565 0.90551 0.89678 1.86529 1.38591 1.61508 1.49937 1.23071 0.99246 0.93196 1.00224 1.21297 0.92218 0.98760 0.92552 1.20253 0.96427 0.93255 1.04198 1.25027 0.91353 1.10502 0.91398 1.86612 1.75416 1.55734 1.15703 0.95047 0.81216 0.75758 0.89479 1.21309 0.94591 0.97388 0.95977 1.21022 0.93729 0.97732 1.02148 0.90175 0.88773 0.91540 0.90710 0.90629 0.90675 0.89056 0.77190 0.88703 0.90009 0.84062 0.86137 0.77589 1.18370 1.18006 0.84868 0.84352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.10 8.72 36.00 0.31 0.21 16 2 C -0.01 -0.01 5.91 -104.21 -0.62 -0.63 16 3 C -0.13 -0.26 5.87 -104.98 -0.62 -0.87 16 4 C 0.51 1.63 7.83 34.61 0.27 1.90 16 5 O -0.50 -2.45 13.14 -19.24 -0.25 -2.70 16 6 O -0.35 -0.79 9.49 -40.53 -0.38 -1.17 16 7 C 0.08 0.07 5.31 37.16 0.20 0.27 16 8 C -0.11 0.07 4.02 -89.81 -0.36 -0.29 16 9 H 0.11 -0.13 8.14 -51.93 -0.42 -0.55 16 10 C -0.16 0.08 7.46 -25.92 -0.19 -0.11 16 11 C 0.08 -0.04 5.21 -25.92 -0.14 -0.18 16 12 H 0.09 -0.16 8.14 -51.93 -0.42 -0.59 16 13 O -0.56 -0.47 13.67 -35.23 -0.48 -0.95 16 14 C -0.12 0.07 7.47 -25.92 -0.19 -0.13 16 15 C -0.03 -0.03 9.17 -39.17 -0.36 -0.38 16 16 C -0.14 0.06 5.38 -104.68 -0.56 -0.51 16 17 C -0.07 0.07 2.82 36.01 0.10 0.17 16 18 O -0.53 -0.30 12.76 -35.23 -0.45 -0.75 16 19 Si 0.68 -1.21 29.78 -169.99 -5.06 -6.27 16 20 C -0.08 0.09 8.67 -39.49 -0.34 -0.25 16 21 C -0.13 0.10 9.66 -39.64 -0.38 -0.29 16 22 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 23 H 0.09 0.23 5.87 -51.93 -0.30 -0.08 16 24 H 0.07 -0.07 8.04 -51.92 -0.42 -0.48 16 25 H 0.07 0.09 7.84 -51.93 -0.41 -0.31 16 26 H 0.08 0.05 8.14 -51.92 -0.42 -0.37 16 27 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 28 H 0.09 0.03 7.90 -51.93 -0.41 -0.38 16 29 H 0.38 -1.20 9.12 45.56 0.42 -0.79 16 30 H 0.09 0.02 8.10 -51.93 -0.42 -0.40 16 31 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 32 H 0.14 0.10 7.63 -52.49 -0.40 -0.30 16 33 H 0.12 -0.21 7.96 -51.93 -0.41 -0.62 16 34 H 0.38 -0.80 8.70 45.56 0.40 -0.41 16 35 H -0.26 -0.03 7.11 56.52 0.40 0.37 16 36 H -0.26 -0.43 7.11 56.52 0.40 -0.03 16 37 H 0.13 -0.44 4.86 -52.49 -0.26 -0.70 16 38 H 0.14 -0.40 8.05 -52.48 -0.42 -0.82 16 LS Contribution 319.49 15.07 4.81 4.81 Total: 0.00 -6.87 319.49 -9.07 -15.94 By element: Atomic # 1 Polarization: -3.45 SS G_CDS: -4.37 Total: -7.83 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -2.88 Total: -1.08 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -1.57 Total: -5.58 kcal Atomic # 14 Polarization: -1.21 SS G_CDS: -5.06 Total: -6.27 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -6.87 -9.07 -15.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13429372_11354868.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.895 kcal (2) G-P(sol) polarization free energy of solvation -6.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds