Wall clock time and date at job start Sat Mar 6 2021 04:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39614 * 120.07247 * 2 1 4 4 C 1.47728 * 120.14802 * 0.02562 * 3 2 1 5 5 O 1.21464 * 120.00022 * 353.84407 * 4 3 2 6 6 O 1.34715 * 119.99877 * 173.84247 * 4 3 2 7 7 C 1.45192 * 117.00041 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47289 * 180.02562 * 7 6 4 9 9 H 1.08997 * 112.84876 * 316.19892 * 8 7 6 10 10 C 1.53777 * 113.61247 * 87.50291 * 8 7 6 11 11 C 1.53783 * 87.08033 * 139.98485 * 10 8 7 12 12 H 1.08994 * 113.69270 * 89.12986 * 11 10 8 13 13 O 1.42906 * 113.61511 * 220.02139 * 11 10 8 14 14 C 1.53780 * 113.61340 * 185.00008 * 8 7 6 15 15 C 1.39653 * 119.70022 * 179.97438 * 3 2 1 16 16 C 1.37914 * 119.84713 * 0.02562 * 15 3 2 17 17 C 1.50701 * 119.92683 * 180.02562 * 16 15 3 18 18 O 1.42895 * 109.47092 * 300.00565 * 17 16 15 19 19 Si 1.86293 * 109.47486 * 179.97438 * 17 16 15 20 20 C 1.38393 * 120.15270 * 359.97438 * 16 15 3 21 21 C 1.37959 * 120.08232 * 179.72182 * 2 1 3 22 22 H 1.09003 * 109.47311 * 83.17251 * 1 2 3 23 23 H 1.08994 * 109.47940 * 323.16532 * 1 2 3 24 24 H 1.09010 * 109.46992 * 203.16711 * 1 2 3 25 25 H 1.08994 * 109.47224 * 300.00299 * 7 6 4 26 26 H 1.09007 * 109.47327 * 59.99928 * 7 6 4 27 27 H 1.09005 * 113.61605 * 254.52909 * 10 8 7 28 28 H 1.09003 * 113.61778 * 25.43636 * 10 8 7 29 29 H 0.96701 * 113.99708 * 277.49927 * 13 11 10 30 30 H 1.08993 * 113.61723 * 334.56533 * 14 8 7 31 31 H 1.08999 * 113.61142 * 105.47369 * 14 8 7 32 32 H 1.08001 * 120.07444 * 179.97438 * 15 3 2 33 33 H 1.09001 * 109.46681 * 59.99844 * 17 16 15 34 34 H 0.96703 * 114.00038 * 299.98820 * 18 17 16 35 35 H 1.48499 * 109.99879 * 58.68636 * 19 17 16 36 36 H 1.48503 * 110.00167 * 180.02562 * 19 17 16 37 37 H 1.08002 * 119.84913 * 180.02562 * 20 16 15 38 38 H 1.08007 * 119.92205 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2066 1.2082 0.0000 4 6 1.4728 2.4904 0.0006 5 8 0.2634 2.4981 -0.1118 6 8 2.1451 3.6511 0.1257 7 6 1.3595 4.8721 0.1176 8 6 2.2892 6.0778 0.2686 9 1 3.0538 5.9298 1.0312 10 6 2.8425 6.6002 -1.0678 11 6 2.6352 8.0179 -0.5092 12 1 3.4946 8.4023 0.0399 13 8 2.1328 8.9453 -1.4735 14 6 1.5450 7.4176 0.3941 15 6 3.6031 1.1991 0.0005 16 6 4.2816 -0.0015 0.0005 17 6 5.7886 -0.0134 0.0017 18 8 6.2711 0.6571 -1.1643 19 14 6.3958 -1.7746 0.0022 20 6 3.5819 -1.1955 0.0005 21 6 2.1985 -1.1938 0.0058 22 1 -0.3634 0.1222 -1.0204 23 1 -0.3635 0.8224 0.6160 24 1 -0.3633 -0.9449 0.4043 25 1 0.8163 4.9483 -0.8243 26 1 0.6505 4.8535 0.9454 27 1 3.8890 6.3461 -1.2363 28 1 2.2070 6.3706 -1.9231 29 1 2.8138 9.3262 -2.0447 30 1 0.5549 7.4115 -0.0615 31 1 1.5440 7.8234 1.4058 32 1 4.1503 2.1302 0.0001 33 1 6.1552 0.4972 0.8922 34 1 5.9834 0.2562 -1.9959 35 1 5.8767 -2.4911 -1.1904 36 1 7.8806 -1.7999 0.0040 37 1 4.1183 -2.1329 0.0010 38 1 1.6585 -2.1291 0.0108 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13429372_11354868.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:55:42 Heat of formation + Delta-G solvation = -110.855013 kcal Electronic energy + Delta-G solvation = -21538.169999 eV Core-core repulsion = 18120.307299 eV Total energy + Delta-G solvation = -3417.862700 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.94571 -40.64151 -40.04575 -38.06304 -37.48418 -36.03069 -33.98106 -32.70351 -29.80546 -29.16421 -26.79666 -25.86291 -25.12802 -23.65486 -22.72103 -21.52100 -20.58015 -18.96129 -18.72966 -18.42984 -17.64014 -17.49651 -16.81780 -16.53645 -16.28160 -16.14026 -15.85324 -15.35765 -15.22097 -14.82244 -14.55416 -14.16457 -14.01692 -13.68919 -13.52652 -13.39443 -13.04262 -12.99375 -12.89651 -12.78766 -12.43301 -12.19714 -12.13560 -11.74493 -11.71255 -11.27868 -11.25746 -10.78358 -10.64693 -10.18138 -9.77197 -4.90810 -0.45794 0.16905 1.28904 1.36558 1.46911 1.61572 1.98581 2.55106 3.17377 3.33761 3.37300 3.47547 3.55362 3.56257 3.74632 3.82785 3.84363 3.90273 4.09199 4.13044 4.16270 4.26980 4.37112 4.46249 4.60739 4.63985 4.69972 4.70281 4.73156 4.74863 4.88083 4.93585 5.03511 5.06566 5.15119 5.22537 5.27145 5.35104 5.49367 5.74174 6.47253 6.57027 6.84555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.024 4.024 3 C -0.151 4.151 4 C 0.504 3.496 5 O -0.524 6.524 6 O -0.352 6.352 7 C 0.078 3.922 8 C -0.103 4.103 9 H 0.117 0.883 10 C -0.164 4.164 11 C 0.076 3.924 12 H 0.104 0.896 13 O -0.582 6.582 14 C -0.123 4.123 15 C -0.036 4.036 16 C -0.139 4.139 17 C -0.083 4.083 18 O -0.548 6.548 19 Si 0.772 3.228 20 C -0.070 4.070 21 C -0.124 4.124 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.396 0.604 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.137 0.863 33 H 0.127 0.873 34 H 0.386 0.614 35 H -0.277 1.277 36 H -0.305 1.305 37 H 0.159 0.841 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.456 -2.943 2.257 4.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.024 4.024 3 C -0.152 4.152 4 C 0.351 3.649 5 O -0.415 6.415 6 O -0.269 6.269 7 C 0.005 3.995 8 C -0.122 4.122 9 H 0.136 0.864 10 C -0.202 4.202 11 C 0.018 3.982 12 H 0.122 0.878 13 O -0.391 6.391 14 C -0.160 4.160 15 C -0.055 4.055 16 C -0.139 4.139 17 C -0.192 4.192 18 O -0.356 6.356 19 Si 0.677 3.323 20 C -0.087 4.087 21 C -0.142 4.142 22 H 0.091 0.909 23 H 0.092 0.908 24 H 0.106 0.894 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.246 0.754 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.155 0.845 33 H 0.145 0.855 34 H 0.236 0.764 35 H -0.203 1.203 36 H -0.233 1.233 37 H 0.176 0.824 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.255 -3.245 2.533 4.693 hybrid contribution 0.141 0.989 -1.536 1.833 sum 2.396 -2.256 0.997 3.438 Atomic orbital electron populations 1.21103 0.89733 1.03924 1.03210 1.20305 0.97234 0.91630 0.93224 1.19089 0.94029 0.89785 1.12290 1.21494 0.85812 0.85056 0.72490 1.90799 1.15868 1.87979 1.46868 1.86534 1.42013 1.15106 1.83253 1.23192 0.93657 0.80185 1.02485 1.22352 0.98862 0.91105 0.99853 0.86447 1.23760 1.02429 0.97067 0.96919 1.23397 0.97239 0.87228 0.90360 0.87827 1.86485 1.40125 1.61845 1.50622 1.23092 0.98782 0.93256 1.00885 1.21299 0.91799 0.99315 0.93038 1.20343 0.96678 0.93159 1.03765 1.25298 0.91000 1.11578 0.91282 1.86585 1.75735 1.56676 1.16653 0.94088 0.77187 0.73570 0.87505 1.21592 0.94595 0.97961 0.94538 1.21327 0.94052 0.97954 1.00866 0.90947 0.90799 0.89430 0.91613 0.90684 0.90062 0.90346 0.75424 0.89877 0.88863 0.84481 0.85509 0.76444 1.20346 1.23300 0.82405 0.81748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.29 8.72 71.23 0.62 0.33 16 2 C -0.02 -0.05 5.91 -19.60 -0.12 -0.17 16 3 C -0.15 -0.74 5.87 -20.10 -0.12 -0.86 16 4 C 0.50 4.22 7.83 70.33 0.55 4.77 16 5 O -0.52 -6.41 13.14 19.95 0.26 -6.15 16 6 O -0.35 -2.18 9.49 -56.24 -0.53 -2.72 16 7 C 0.08 0.27 5.31 71.98 0.38 0.65 16 8 C -0.10 0.06 4.02 -10.27 -0.04 0.02 16 9 H 0.12 -0.29 8.14 -2.39 -0.02 -0.31 16 10 C -0.16 0.05 7.46 31.12 0.23 0.29 16 11 C 0.08 -0.08 5.21 31.12 0.16 0.08 16 12 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 13 O -0.58 -1.16 13.67 -148.98 -2.04 -3.20 16 14 C -0.12 0.07 7.47 31.12 0.23 0.30 16 15 C -0.04 -0.08 9.17 22.53 0.21 0.13 16 16 C -0.14 0.21 5.38 -19.90 -0.11 0.10 16 17 C -0.08 0.22 2.82 71.24 0.20 0.42 16 18 O -0.55 -0.56 12.76 -148.98 -1.90 -2.46 16 19 Si 0.77 -3.57 29.78 68.60 2.04 -1.52 16 20 C -0.07 0.29 8.67 22.33 0.19 0.49 16 21 C -0.12 0.37 9.66 22.23 0.21 0.58 16 22 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 23 H 0.07 0.49 5.87 -2.39 -0.01 0.48 16 24 H 0.09 -0.23 8.04 -2.38 -0.02 -0.24 16 25 H 0.07 0.33 7.84 -2.39 -0.02 0.31 16 26 H 0.07 0.25 8.14 -2.38 -0.02 0.23 16 27 H 0.08 -0.13 8.14 -2.38 -0.02 -0.15 16 28 H 0.08 0.18 7.90 -2.39 -0.02 0.16 16 29 H 0.40 -2.45 9.12 -74.06 -0.68 -3.12 16 30 H 0.08 0.15 8.10 -2.39 -0.02 0.13 16 31 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 32 H 0.14 0.33 7.63 -2.91 -0.02 0.31 16 33 H 0.13 -0.51 7.96 -2.39 -0.02 -0.53 16 34 H 0.39 -1.72 8.70 -74.06 -0.64 -2.36 16 35 H -0.28 0.41 7.11 99.48 0.71 1.11 16 36 H -0.30 -1.16 7.11 99.48 0.71 -0.46 16 37 H 0.16 -1.49 4.86 -2.91 -0.01 -1.50 16 38 H 0.17 -1.39 8.05 -2.91 -0.02 -1.41 16 Total: 0.00 -17.11 319.49 0.26 -16.86 By element: Atomic # 1 Polarization: -7.75 SS G_CDS: -0.19 Total: -7.94 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 2.61 Total: 7.13 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -4.21 Total: -14.53 kcal Atomic # 14 Polarization: -3.57 SS G_CDS: 2.04 Total: -1.52 kcal Total: -17.11 0.26 -16.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13429372_11354868.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.997 kcal (2) G-P(sol) polarization free energy of solvation -17.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds