Wall clock time and date at job start Sat Mar 6 2021 05:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37919 * 120.08368 * 2 1 4 4 C 1.38381 * 120.15442 * 180.25392 * 3 2 1 5 5 C 1.38347 * 120.30496 * 359.78589 * 4 3 2 6 6 C 1.50697 * 119.92692 * 179.97438 * 5 4 3 7 7 O 1.42896 * 109.47309 * 120.02155 * 6 5 4 8 8 Si 1.86299 * 109.47265 * 0.02562 * 6 5 4 9 9 H 1.48501 * 109.46835 * 59.99860 * 8 6 5 10 10 H 1.48500 * 109.47366 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47031 * 300.00503 * 8 6 5 12 12 C 1.37965 * 120.14587 * 0.02562 * 5 4 3 13 13 C 1.39610 * 119.85064 * 359.97438 * 12 5 4 14 14 C 1.47725 * 120.15103 * 179.97438 * 13 12 5 15 15 O 1.21469 * 120.00208 * 173.77911 * 14 13 12 16 16 O 1.34705 * 119.99940 * 353.78457 * 14 13 12 17 17 C 1.45203 * 116.99956 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.46895 * 179.97438 * 17 16 14 19 19 C 1.35053 * 125.62033 * 90.00355 * 18 17 16 20 20 C 1.40473 * 107.11259 * 180.02562 * 19 18 17 21 21 C 1.36552 * 106.70606 * 359.97438 * 20 19 18 22 22 C 1.43193 * 125.98652 * 179.97438 * 21 20 19 23 23 N 9.63912 * 91.56247 * 93.53799 * 5 1 2 24 24 O 1.34059 * 125.61559 * 270.01868 * 18 17 16 25 25 H 1.09000 * 109.47267 * 263.61656 * 1 2 3 26 26 H 1.09004 * 109.46465 * 23.61654 * 1 2 3 27 27 H 1.09000 * 109.47472 * 143.61164 * 1 2 3 28 28 H 1.08007 * 119.91750 * 359.97438 * 3 2 1 29 29 H 1.08005 * 119.84928 * 179.76347 * 4 3 2 30 30 H 1.09006 * 109.46774 * 240.02164 * 6 5 4 31 31 H 0.96697 * 113.99925 * 299.99968 * 7 6 5 32 32 H 1.07999 * 120.07428 * 180.02562 * 12 5 4 33 33 H 1.09003 * 109.47174 * 60.00054 * 17 16 14 34 34 H 1.08999 * 109.46834 * 299.99476 * 17 16 14 35 35 H 1.08001 * 126.43976 * 0.02562 * 19 18 17 36 36 H 1.07998 * 126.64267 * 179.73640 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1934 0.0000 4 6 3.5821 1.1951 -0.0053 5 6 4.2817 0.0016 -0.0062 6 6 5.7886 0.0134 -0.0125 7 8 6.2752 -0.6549 1.1531 8 14 6.3959 1.7746 -0.0174 9 1 5.9005 2.4723 1.1963 10 1 7.8808 1.7863 -0.0243 11 1 5.8902 2.4692 -1.2287 12 6 3.6028 -1.1995 -0.0023 13 6 2.2068 -1.2086 0.0031 14 6 1.4731 -2.4907 0.0067 15 8 0.2642 -2.4985 0.1253 16 8 2.1447 -3.6514 -0.1215 17 6 1.3591 -4.8724 -0.1089 18 6 2.2740 -6.0600 -0.2632 19 6 2.8596 -6.7382 0.7473 20 6 3.6249 -7.7638 0.1678 21 6 3.4642 -7.6575 -1.1841 22 6 4.0655 -8.5019 -2.1719 23 7 4.5305 0.5963 -9.6237 24 8 2.6408 -6.6170 -1.4261 25 1 -0.3634 -0.1143 1.0213 26 1 -0.3632 0.9417 -0.4117 27 1 -0.3634 -0.8273 -0.6097 28 1 1.6583 2.1288 -0.0004 29 1 4.1185 2.1326 -0.0091 30 1 6.1522 -0.4988 -0.9034 31 1 5.9902 -0.2525 1.9849 32 1 4.1501 -2.1305 -0.0026 33 1 0.6459 -4.8542 -0.9331 34 1 0.8208 -4.9484 0.8359 35 1 2.7586 -6.5309 1.8024 36 1 4.2270 -8.4924 0.6901 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13429372_12860278.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:45:58 Heat of formation + Delta-G solvation = 358.166131 kcal Electronic energy + Delta-G solvation = -22558.927944 eV Core-core repulsion = 18880.492553 eV Total energy + Delta-G solvation = -3678.435391 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.095 amu Computer time = 24.28 seconds Orbital eigenvalues (eV) -42.73204 -41.88590 -40.36704 -38.06645 -37.45065 -33.99196 -33.58186 -32.92197 -31.93534 -29.35238 -28.69941 -28.22498 -25.81499 -25.08895 -23.30413 -22.78409 -21.99965 -21.47175 -20.06913 -19.05827 -18.59476 -17.82600 -17.61690 -16.88091 -16.57867 -16.39057 -16.30690 -16.00879 -15.52187 -15.13430 -14.98342 -14.61788 -14.36384 -14.27714 -14.19889 -13.93034 -13.45799 -13.36421 -13.07780 -13.03380 -12.96294 -12.88512 -12.12532 -11.97765 -11.88179 -11.64207 -11.34308 -10.79405 -10.76301 -10.45070 -10.22553 -9.97335 -9.78203 -6.56228 -5.11272 -5.11019 -0.50750 0.12763 0.37821 0.85956 1.16834 1.31367 1.51643 1.54783 1.81200 1.96120 2.16455 2.51248 2.75976 3.37858 3.49662 3.65047 3.74077 3.77921 3.82490 3.96465 4.06037 4.23331 4.24579 4.31599 4.44274 4.62192 4.68143 4.72694 4.74945 4.84668 5.02227 5.13804 5.18653 5.21527 5.25695 5.28891 5.49553 5.72062 5.80340 6.12533 6.52766 6.62806 6.68856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.020 4.020 3 C -0.116 4.116 4 C -0.075 4.075 5 C -0.138 4.138 6 C -0.103 4.103 7 O -0.562 6.562 8 Si 1.006 2.994 9 H -0.246 1.246 10 H -0.278 1.278 11 H -0.228 1.228 12 C -0.045 4.045 13 C -0.149 4.149 14 C 0.497 3.503 15 O -0.522 6.522 16 O -0.366 6.366 17 C 0.195 3.805 18 C -0.225 4.225 19 C -0.097 4.097 20 C -0.496 4.496 21 C -0.070 4.070 22 C -0.222 4.222 23 N 1.000 4.000 24 O -0.233 6.233 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.069 0.931 28 H 0.176 0.824 29 H 0.160 0.840 30 H 0.116 0.884 31 H 0.388 0.612 32 H 0.115 0.885 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.144 0.856 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.227 43.346 -40.971 59.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.021 4.021 3 C -0.133 4.133 4 C -0.093 4.093 5 C -0.138 4.138 6 C -0.211 4.211 7 O -0.369 6.369 8 Si 0.826 3.174 9 H -0.170 1.170 10 H -0.203 1.203 11 H -0.150 1.150 12 C -0.064 4.064 13 C -0.150 4.150 14 C 0.344 3.656 15 O -0.414 6.414 16 O -0.284 6.284 17 C 0.123 3.877 18 C -0.268 4.268 19 C -0.116 4.116 20 C -0.514 4.514 21 C -0.116 4.116 22 C -0.224 4.224 23 N 1.000 4.000 24 O -0.141 6.141 25 H 0.091 0.909 26 H 0.116 0.884 27 H 0.087 0.913 28 H 0.193 0.807 29 H 0.177 0.823 30 H 0.134 0.866 31 H 0.237 0.763 32 H 0.133 0.867 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.162 0.838 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.279 43.896 -41.548 60.766 hybrid contribution -0.910 -0.733 1.772 2.123 sum 5.369 43.163 -39.776 58.941 Atomic orbital electron populations 1.21110 0.89371 1.04073 1.03342 1.20310 0.97416 0.91091 0.93236 1.21349 0.93852 0.97740 1.00391 1.21613 0.94876 0.97615 0.95175 1.20470 0.97316 0.92647 1.03411 1.25572 0.90412 1.13303 0.91768 1.86535 1.75203 1.58719 1.16463 0.84945 0.78732 0.71265 0.82441 1.16983 1.20345 1.15039 1.21269 0.92163 0.99289 0.93634 1.19159 0.93959 0.89674 1.12231 1.21814 0.86116 0.85035 0.72605 1.90749 1.15500 1.88105 1.47000 1.86760 1.43320 1.15358 1.82918 1.20632 0.88623 0.75624 1.02836 1.21174 1.17322 1.04560 0.83716 1.21243 0.96440 0.95290 0.98666 1.20254 1.24929 1.14391 0.91858 1.24898 0.95007 0.91472 1.00222 1.82672 1.09655 0.90116 0.40000 1.99999 0.71915 0.62201 0.65885 1.83960 1.56631 1.40457 1.33059 0.90941 0.88449 0.91259 0.80704 0.82292 0.86589 0.76254 0.86712 0.90641 0.88145 0.83791 0.87730 Number of geometries 1 Number of calculations of the screened coulomb radii 10 The total number of SCF iterations 610. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 8.73 71.24 0.62 -0.06 16 2 C -0.02 -0.13 5.91 -19.60 -0.12 -0.25 16 3 C -0.12 0.17 9.66 22.23 0.21 0.38 16 4 C -0.08 0.16 8.67 22.33 0.19 0.35 16 5 C -0.14 -0.51 5.38 -19.90 -0.11 -0.61 16 6 C -0.10 -0.13 2.82 71.24 0.20 0.07 16 7 O -0.56 -3.57 12.76 -148.98 -1.90 -5.47 16 8 Si 1.01 -5.21 25.06 68.60 1.72 -3.49 16 9 H -0.25 1.36 7.11 99.48 0.71 2.07 16 10 H -0.28 0.25 7.11 99.48 0.71 0.96 16 11 H -0.23 2.12 7.11 99.48 0.71 2.83 16 12 C -0.05 -0.54 9.17 22.54 0.21 -0.34 16 13 C -0.15 -2.07 5.87 -20.10 -0.12 -2.19 16 14 C 0.50 10.83 7.82 70.33 0.55 11.38 16 15 O -0.52 -12.07 13.14 19.94 0.26 -11.81 16 16 O -0.37 -10.41 9.48 -56.15 -0.53 -10.94 16 17 C 0.19 6.04 6.00 71.24 0.43 6.46 16 18 C -0.22 -9.59 6.95 24.95 0.17 -9.42 16 19 C -0.10 -4.27 10.77 22.08 0.24 -4.03 16 20 C -0.50 -25.08 10.84 22.42 0.24 -24.83 16 21 C -0.07 -3.68 7.08 23.12 0.16 -3.52 16 22 C -0.22 -10.72 25.68 69.06 1.77 -8.94 16 23 N 1.00 -71.34 30.19 37.02 1.12 -70.22 16 24 O -0.23 -11.63 10.67 -5.85 -0.06 -11.69 16 25 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.10 -0.19 8.04 -2.39 -0.02 -0.21 16 27 H 0.07 0.78 5.86 -2.39 -0.01 0.77 16 28 H 0.18 -1.60 8.06 -2.91 -0.02 -1.62 16 29 H 0.16 -1.41 4.86 -2.91 -0.01 -1.42 16 30 H 0.12 0.06 7.96 -2.38 -0.02 0.04 16 31 H 0.39 -0.27 8.70 -74.06 -0.64 -0.91 16 32 H 0.11 2.05 7.63 -2.91 -0.02 2.03 16 33 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.14 5.17 8.06 -2.91 -0.02 5.15 16 36 H 0.10 5.10 8.06 -2.91 -0.02 5.08 16 Total: 0.00 -135.61 345.64 6.53 -129.08 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 1.26 Total: 20.08 kcal Atomic # 6 Polarization: -40.20 SS G_CDS: 4.67 Total: -35.54 kcal Atomic # 7 Polarization: -71.34 SS G_CDS: 1.12 Total: -70.22 kcal Atomic # 8 Polarization: -37.67 SS G_CDS: -2.23 Total: -39.91 kcal Atomic # 14 Polarization: -5.21 SS G_CDS: 1.72 Total: -3.49 kcal Total: -135.61 6.53 -129.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13429372_12860278.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 487.247 kcal (2) G-P(sol) polarization free energy of solvation -135.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 351.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -129.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 358.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 24.28 seconds