Wall clock time and date at job start Sat Mar 6 2021 03:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39613 * 120.07281 * 2 1 4 4 C 1.47725 * 120.15090 * 359.97438 * 3 2 1 5 5 O 1.21474 * 119.99864 * 354.01915 * 4 3 2 6 6 O 1.34707 * 120.00348 * 174.01251 * 4 3 2 7 7 C 1.45196 * 117.00232 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.47121 * 179.97438 * 7 6 4 9 9 H 1.08993 * 109.46961 * 179.97438 * 8 7 6 10 10 O 1.42961 * 109.47354 * 300.00433 * 8 7 6 11 11 C 1.43090 * 113.77120 * 178.79285 * 10 8 7 12 12 C 1.53255 * 108.94299 * 302.02823 * 11 10 8 13 13 H 1.09004 * 109.57487 * 294.71374 * 12 11 10 14 14 N 1.46500 * 109.57726 * 174.46108 * 12 11 10 15 15 C 1.34521 * 124.45923 * 299.69852 * 14 12 11 16 16 O 1.21447 * 125.70926 * 0.03194 * 15 14 12 17 17 C 1.47817 * 108.58260 * 179.90655 * 15 14 12 18 18 C 1.40944 * 105.87620 * 0.34264 * 17 15 14 19 19 C 1.38573 * 119.81897 * 179.79416 * 18 17 15 20 20 C 1.38609 * 119.72010 * 0.02562 * 19 18 17 21 21 C 1.38229 * 120.45971 * 359.97438 * 20 19 18 22 22 C 1.38562 * 134.29861 * 180.12879 * 17 15 14 23 23 C 1.34530 * 124.46076 * 120.00003 * 14 12 11 24 24 O 1.21447 * 125.71014 * 359.93712 * 23 14 12 25 25 C 1.53258 * 108.84778 * 54.52252 * 12 11 10 26 26 O 1.42971 * 109.46775 * 59.99990 * 8 7 6 27 27 C 1.39650 * 119.69950 * 180.27683 * 3 2 1 28 28 C 1.37925 * 119.84581 * 359.53858 * 27 3 2 29 29 C 1.50700 * 119.92093 * 180.18847 * 28 27 3 30 30 O 1.42895 * 109.47302 * 300.25070 * 29 28 27 31 31 Si 1.86302 * 109.46943 * 180.25306 * 29 28 27 32 32 C 1.38382 * 120.15016 * 0.44131 * 28 27 3 33 33 C 1.37966 * 120.08025 * 180.02562 * 2 1 3 34 34 H 1.08994 * 109.47212 * 83.47411 * 1 2 3 35 35 H 1.09005 * 109.46444 * 203.47054 * 1 2 3 36 36 H 1.09001 * 109.47507 * 323.46655 * 1 2 3 37 37 H 1.08991 * 109.47137 * 299.99887 * 7 6 4 38 38 H 1.09000 * 109.46878 * 60.00314 * 7 6 4 39 39 H 1.09006 * 109.55624 * 61.86428 * 11 10 8 40 40 H 1.09003 * 109.55827 * 182.07845 * 11 10 8 41 41 H 1.07995 * 120.13572 * 180.02562 * 19 18 17 42 42 H 1.07996 * 119.77295 * 180.02562 * 20 19 18 43 43 H 1.07993 * 119.77257 * 180.02562 * 21 20 19 44 44 H 1.07997 * 120.14628 * 0.24042 * 22 17 15 45 45 H 1.09004 * 109.55869 * 65.31520 * 25 12 11 46 46 H 1.08999 * 109.56179 * 185.63742 * 25 12 11 47 47 H 1.07997 * 120.07623 * 179.72253 * 27 3 2 48 48 H 1.08996 * 109.47106 * 60.25604 * 29 28 27 49 49 H 0.96695 * 114.00371 * 179.97438 * 30 29 28 50 50 H 1.48498 * 110.00153 * 298.68185 * 31 29 28 51 51 H 1.48500 * 109.99794 * 59.99775 * 31 29 28 52 52 H 1.08003 * 119.84994 * 179.76984 * 32 28 27 53 53 H 1.08001 * 119.92124 * 359.97250 * 33 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2066 1.2082 0.0000 4 6 1.4730 2.4904 -0.0006 5 8 0.2633 2.4979 -0.1107 6 8 2.1454 3.6513 0.1211 7 6 1.3597 4.8722 0.1132 8 6 2.2896 6.0782 0.2613 9 1 1.6998 6.9947 0.2549 10 8 3.0049 5.9797 1.4952 11 6 3.9259 7.0525 1.7151 12 6 4.9270 7.0943 0.5554 13 1 5.5333 6.1885 0.5634 14 7 5.7941 8.2666 0.6975 15 6 5.3575 9.5388 0.7138 16 8 4.1998 9.8923 0.6150 17 6 6.5222 10.4346 0.8749 18 6 7.6502 9.5921 0.9414 19 6 8.9134 10.1423 1.0897 20 6 9.0582 11.5183 1.1723 21 6 7.9519 12.3445 1.1072 22 6 6.6822 11.8084 0.9589 23 6 7.1324 8.2127 0.8232 24 8 7.8029 7.2001 0.8376 25 6 4.1525 7.1822 -0.7642 26 8 3.2170 6.1012 -0.8265 27 6 3.6031 1.1991 -0.0059 28 6 4.2817 -0.0016 -0.0020 29 6 5.7886 -0.0134 -0.0040 30 8 6.2687 0.6569 -1.1711 31 14 6.3959 -1.7747 -0.0055 32 6 3.5819 -1.1955 -0.0015 33 6 2.1985 -1.1939 -0.0005 34 1 -0.3633 0.1168 -1.0209 35 1 -0.3632 -0.9427 0.4093 36 1 -0.3634 0.8257 0.6118 37 1 0.8141 4.9471 -0.8274 38 1 0.6529 4.8548 0.9428 39 1 3.3824 7.9962 1.7623 40 1 4.4577 6.8904 2.6527 41 1 9.7812 9.5016 1.1408 42 1 10.0423 11.9480 1.2875 43 1 8.0776 13.4151 1.1722 44 1 5.8215 12.4587 0.9087 45 1 3.6176 8.1308 -0.8109 46 1 4.8477 7.1119 -1.6007 47 1 4.1503 2.1301 -0.0104 48 1 6.1571 0.4972 0.8857 49 1 7.2328 0.6879 -1.2383 50 1 5.9299 -2.4737 1.2190 51 1 5.9001 -2.4817 -1.2136 52 1 4.1183 -2.1329 -0.0022 53 1 1.6585 -2.1292 -0.0005 There are 80 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 80 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13429372_13594054.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:12:34 Heat of formation + Delta-G solvation = -161.146714 kcal Electronic energy + Delta-G solvation = -43572.558106 eV Core-core repulsion = 37922.383886 eV Total energy + Delta-G solvation = -5650.174220 eV No. of doubly occupied orbitals = 80 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 440.149 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -43.71953 -42.05188 -41.27554 -40.36833 -39.95717 -39.47927 -38.02749 -37.48833 -37.19312 -37.14213 -34.59202 -34.18198 -32.92776 -32.16607 -31.67681 -29.97332 -29.37503 -27.53467 -26.36016 -26.12592 -25.40718 -25.13602 -24.05344 -23.49673 -22.99461 -22.29719 -21.49166 -21.00841 -19.20675 -19.20318 -18.97867 -18.78372 -18.38324 -18.21271 -17.75344 -17.66016 -17.45900 -17.32044 -17.15563 -16.81544 -16.62342 -16.43438 -16.20421 -15.92497 -15.61204 -15.49132 -15.34028 -15.29773 -15.07006 -15.06539 -14.82152 -14.78922 -14.69116 -14.59074 -14.21411 -14.09644 -13.80573 -13.53958 -13.41308 -13.37028 -13.28579 -13.05957 -12.81541 -12.72344 -12.69784 -12.50589 -12.35443 -12.27260 -11.95587 -11.92080 -11.71412 -11.65619 -11.32712 -10.99861 -10.88657 -10.41937 -10.33730 -10.26160 -10.25098 -9.83129 -4.94895 -1.11939 -0.61145 -0.06418 0.03273 0.85671 0.88141 1.22387 1.27285 1.35323 1.60589 1.63954 1.93145 2.13855 2.20210 2.40061 2.43563 2.56906 3.05701 3.12447 3.19583 3.26892 3.28527 3.41083 3.53195 3.55258 3.63720 3.65371 3.69798 3.78892 3.90058 4.01454 4.02591 4.03104 4.04077 4.12666 4.14530 4.16500 4.20026 4.22687 4.24790 4.38829 4.44682 4.51043 4.51779 4.60220 4.66278 4.72467 4.80229 4.87314 4.89112 4.99499 5.07913 5.12922 5.18026 5.24846 5.32516 5.36050 5.39919 5.58359 5.65105 5.67307 5.91263 6.33400 6.48368 6.86757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.023 4.023 3 C -0.146 4.146 4 C 0.510 3.490 5 O -0.516 6.516 6 O -0.341 6.341 7 C 0.081 3.919 8 C 0.242 3.758 9 H 0.111 0.889 10 O -0.385 6.385 11 C 0.051 3.949 12 C 0.077 3.923 13 H 0.118 0.882 14 N -0.569 5.569 15 C 0.576 3.424 16 O -0.481 6.481 17 C -0.160 4.160 18 C -0.159 4.159 19 C -0.044 4.044 20 C -0.083 4.083 21 C -0.084 4.084 22 C -0.043 4.043 23 C 0.576 3.424 24 O -0.487 6.487 25 C 0.051 3.949 26 O -0.385 6.385 27 C -0.033 4.033 28 C -0.110 4.110 29 C -0.086 4.086 30 O -0.565 6.565 31 Si 0.780 3.220 32 C -0.092 4.092 33 C -0.125 4.125 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.115 0.885 41 H 0.154 0.846 42 H 0.176 0.824 43 H 0.176 0.824 44 H 0.155 0.845 45 H 0.076 0.924 46 H 0.114 0.886 47 H 0.139 0.861 48 H 0.092 0.908 49 H 0.404 0.596 50 H -0.280 1.280 51 H -0.291 1.291 52 H 0.134 0.866 53 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.129 6.194 2.149 10.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.023 4.023 3 C -0.147 4.147 4 C 0.357 3.643 5 O -0.407 6.407 6 O -0.258 6.258 7 C 0.007 3.993 8 C 0.147 3.853 9 H 0.128 0.872 10 O -0.304 6.304 11 C -0.026 4.026 12 C -0.025 4.025 13 H 0.136 0.864 14 N -0.314 5.314 15 C 0.367 3.633 16 O -0.354 6.354 17 C -0.163 4.163 18 C -0.162 4.162 19 C -0.062 4.062 20 C -0.101 4.101 21 C -0.102 4.102 22 C -0.061 4.061 23 C 0.367 3.633 24 O -0.359 6.359 25 C -0.026 4.026 26 O -0.305 6.305 27 C -0.051 4.051 28 C -0.110 4.110 29 C -0.194 4.194 30 O -0.375 6.375 31 Si 0.684 3.316 32 C -0.110 4.110 33 C -0.142 4.142 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.094 0.906 40 H 0.133 0.867 41 H 0.172 0.828 42 H 0.194 0.806 43 H 0.194 0.806 44 H 0.173 0.827 45 H 0.095 0.905 46 H 0.132 0.868 47 H 0.156 0.844 48 H 0.110 0.890 49 H 0.255 0.745 50 H -0.207 1.207 51 H -0.218 1.218 52 H 0.151 0.849 53 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 6.540 4.738 1.945 8.307 hybrid contribution -0.736 0.552 -0.002 0.920 sum 5.804 5.290 1.943 8.090 Atomic orbital electron populations 1.21122 0.88783 1.04162 1.03645 1.20315 0.97744 0.91124 0.93112 1.19133 0.93846 0.90245 1.11488 1.21265 0.85753 0.84737 0.72545 1.90792 1.15247 1.87856 1.46786 1.86644 1.41282 1.14671 1.83166 1.23334 0.92139 0.78435 1.05384 1.23858 0.87665 0.97798 0.75983 0.87237 1.88228 1.55485 1.48149 1.38534 1.23034 0.90305 0.91277 0.97967 1.22547 0.93119 0.88342 0.98490 0.86359 1.46464 1.09124 1.08236 1.67553 1.18748 0.88683 0.82075 0.73776 1.90793 1.20136 1.79476 1.45007 1.20445 0.92199 0.95787 1.07889 1.20431 0.96343 0.91515 1.07940 1.21168 0.94924 0.96490 0.93662 1.21960 1.01625 0.91652 0.94878 1.21968 0.90594 1.02822 0.94804 1.21163 0.99999 0.91301 0.93675 1.18781 0.80994 0.89858 0.73652 1.90823 1.62079 1.37551 1.45454 1.23036 0.92070 0.90818 0.96698 1.88241 1.45966 1.50514 1.45743 1.21317 0.92182 0.98993 0.92630 1.19693 0.95608 0.92966 1.02744 1.24955 0.91449 1.11412 0.91629 1.86444 1.29040 1.79932 1.42082 0.94099 0.89272 0.71417 0.76784 1.21384 0.95316 0.97225 0.97027 1.21253 0.93434 0.98457 1.01088 0.90382 0.89505 0.90130 0.87526 0.87354 0.90610 0.86662 0.82795 0.80635 0.80638 0.82691 0.90544 0.86782 0.84360 0.89047 0.74497 1.20698 1.21815 0.84916 0.81867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 8.74 71.24 0.62 -0.03 16 2 C -0.02 -0.17 5.92 -19.60 -0.12 -0.29 16 3 C -0.15 -1.54 5.87 -20.10 -0.12 -1.65 16 4 C 0.51 6.02 7.83 70.33 0.55 6.57 16 5 O -0.52 -6.98 13.13 19.92 0.26 -6.71 16 6 O -0.34 -3.65 9.29 -49.87 -0.46 -4.11 16 7 C 0.08 0.43 5.56 71.98 0.40 0.83 16 8 C 0.24 1.14 3.59 71.98 0.26 1.40 16 9 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 10 O -0.38 -2.63 10.44 -122.14 -1.27 -3.91 16 11 C 0.05 0.19 6.33 72.07 0.46 0.65 16 12 C 0.08 0.33 3.07 45.16 0.14 0.47 16 13 H 0.12 0.77 7.59 -2.38 -0.02 0.75 16 14 N -0.57 -2.16 2.53 -739.56 -1.87 -4.03 16 15 C 0.58 2.02 7.35 86.82 0.64 2.66 16 16 O -0.48 -3.28 15.18 -3.55 -0.05 -3.33 16 17 C -0.16 0.06 6.40 -20.00 -0.13 -0.07 16 18 C -0.16 -0.01 6.40 -20.00 -0.13 -0.14 16 19 C -0.04 0.24 10.09 22.44 0.23 0.46 16 20 C -0.08 0.87 10.04 22.36 0.22 1.10 16 21 C -0.08 0.89 10.04 22.36 0.22 1.12 16 22 C -0.04 0.25 10.09 22.44 0.23 0.48 16 23 C 0.58 2.85 8.02 86.82 0.70 3.54 16 24 O -0.49 -4.98 17.44 -3.55 -0.06 -5.04 16 25 C 0.05 0.21 6.32 72.07 0.46 0.66 16 26 O -0.39 -2.80 10.44 -122.14 -1.27 -4.08 16 27 C -0.03 -0.32 9.17 22.54 0.21 -0.11 16 28 C -0.11 -0.80 5.42 -19.90 -0.11 -0.91 16 29 C -0.09 -0.14 2.81 71.24 0.20 0.06 16 30 O -0.56 -1.40 12.74 -148.98 -1.90 -3.30 16 31 Si 0.78 -1.30 29.78 68.60 2.04 0.74 16 32 C -0.09 -0.54 8.67 22.33 0.19 -0.35 16 33 C -0.12 -0.58 9.66 22.23 0.21 -0.37 16 34 H 0.08 0.45 8.14 -2.39 -0.02 0.44 16 35 H 0.09 0.05 8.04 -2.38 -0.02 0.03 16 36 H 0.08 0.70 5.85 -2.39 -0.01 0.68 16 37 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.08 0.26 6.72 -2.38 -0.02 0.24 16 40 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 41 H 0.15 -1.20 8.06 -2.91 -0.02 -1.22 16 42 H 0.18 -2.90 8.06 -2.91 -0.02 -2.92 16 43 H 0.18 -2.92 8.06 -2.91 -0.02 -2.94 16 44 H 0.16 -1.32 8.06 -2.91 -0.02 -1.34 16 45 H 0.08 0.29 6.65 -2.39 -0.02 0.27 16 46 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 47 H 0.14 1.38 7.63 -2.91 -0.02 1.36 16 48 H 0.09 -0.14 7.96 -2.39 -0.02 -0.16 16 49 H 0.40 -3.28 8.74 -74.06 -0.65 -3.93 16 50 H -0.28 -0.73 7.11 99.48 0.71 -0.02 16 51 H -0.29 -1.49 7.11 99.48 0.71 -0.79 16 52 H 0.13 0.44 4.86 -2.91 -0.01 0.43 16 53 H 0.16 -0.20 8.06 -2.91 -0.02 -0.23 16 Total: 0.00 -27.03 445.74 1.13 -25.90 By element: Atomic # 1 Polarization: -8.61 SS G_CDS: 0.39 Total: -8.22 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: 5.34 Total: 16.08 kcal Atomic # 7 Polarization: -2.16 SS G_CDS: -1.87 Total: -4.03 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -4.76 Total: -30.48 kcal Atomic # 14 Polarization: -1.30 SS G_CDS: 2.04 Total: 0.74 kcal Total: -27.03 1.13 -25.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13429372_13594054.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.246 kcal (2) G-P(sol) polarization free energy of solvation -27.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds