Wall clock time and date at job start Sat Mar 6 2021 03:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.39608 * 120.07540 * 2 1 4 4 C 1.47727 * 120.14952 * 359.95719 * 3 2 1 5 5 O 1.21475 * 119.99976 * 353.78786 * 4 3 2 6 6 O 1.34714 * 120.00301 * 173.79693 * 4 3 2 7 7 C 1.45200 * 117.00214 * 179.97438 * 6 4 3 8 8 C 1.52995 * 109.46964 * 179.97438 * 7 6 4 9 9 H 1.08999 * 112.84729 * 43.80867 * 8 7 6 10 10 C 1.53784 * 113.61193 * 175.00469 * 8 7 6 11 11 C 1.53784 * 87.08059 * 139.98515 * 10 8 7 12 12 H 1.08995 * 113.61962 * 89.11714 * 11 10 8 13 13 O 1.42901 * 113.60912 * 220.01816 * 11 10 8 14 14 C 1.42905 * 113.99734 * 209.99900 * 13 11 10 15 15 C 1.52994 * 109.47233 * 59.99735 * 14 13 11 16 16 C 1.52995 * 109.46716 * 180.02562 * 14 13 11 17 17 C 1.53002 * 109.46929 * 299.99720 * 14 13 11 18 18 C 1.53778 * 113.61687 * 272.50007 * 8 7 6 19 19 C 1.39639 * 119.70229 * 179.97438 * 3 2 1 20 20 C 1.37929 * 119.84888 * 0.02562 * 19 3 2 21 21 C 1.50698 * 119.92526 * 179.72238 * 20 19 3 22 22 O 1.42894 * 109.47404 * 65.00129 * 21 20 19 23 23 Si 1.86302 * 109.46878 * 185.00214 * 21 20 19 24 24 C 1.38389 * 120.14611 * 359.97438 * 20 19 3 25 25 C 1.37960 * 120.07352 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.46808 * 83.42497 * 1 2 3 27 27 H 1.08997 * 109.47215 * 203.41897 * 1 2 3 28 28 H 1.08994 * 109.47238 * 323.42737 * 1 2 3 29 29 H 1.08995 * 109.47154 * 300.00435 * 7 6 4 30 30 H 1.09004 * 109.46799 * 59.99856 * 7 6 4 31 31 H 1.09004 * 113.60854 * 254.52637 * 10 8 7 32 32 H 1.08995 * 113.61735 * 25.34766 * 10 8 7 33 33 H 1.09003 * 109.46589 * 60.00239 * 15 14 13 34 34 H 1.08997 * 109.47114 * 179.97438 * 15 14 13 35 35 H 1.08998 * 109.47061 * 300.00245 * 15 14 13 36 36 H 1.09000 * 109.47669 * 60.00229 * 16 14 13 37 37 H 1.09009 * 109.46989 * 179.97438 * 16 14 13 38 38 H 1.08998 * 109.47430 * 299.99485 * 16 14 13 39 39 H 1.09003 * 109.46627 * 60.00136 * 17 14 13 40 40 H 1.08993 * 109.47197 * 180.02562 * 17 14 13 41 41 H 1.08999 * 109.47266 * 300.00729 * 17 14 13 42 42 H 1.09007 * 113.61507 * 334.56912 * 18 8 7 43 43 H 1.08998 * 113.61459 * 105.47105 * 18 8 7 44 44 H 1.08001 * 120.07769 * 180.02562 * 19 3 2 45 45 H 1.09001 * 109.47200 * 304.99685 * 21 20 19 46 46 H 0.96704 * 114.00381 * 59.99543 * 22 21 20 47 47 H 1.48502 * 110.00095 * 180.02562 * 23 21 20 48 48 H 1.48507 * 109.99705 * 301.31659 * 23 21 20 49 49 H 1.07998 * 119.84993 * 180.02562 * 24 20 19 50 50 H 1.07997 * 119.93185 * 0.05089 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2067 1.2081 0.0000 4 6 1.4731 2.4904 -0.0010 5 8 0.2638 2.4982 -0.1156 6 8 2.1452 3.6511 0.1251 7 6 1.3596 4.8721 0.1153 8 6 2.2890 6.0777 0.2690 9 1 3.1839 6.0036 -0.3488 10 6 1.5678 7.4307 0.1490 11 6 2.4641 7.9212 1.2984 12 1 3.4076 8.3517 0.9632 13 8 1.7812 8.7463 2.2445 14 6 2.6157 9.7195 2.8760 15 6 3.2108 10.6469 1.8146 16 6 1.7841 10.5407 3.8633 17 6 3.7458 9.0121 3.6267 18 6 2.5777 6.4504 1.7327 19 6 3.6031 1.1990 0.0005 20 6 4.2818 -0.0017 0.0005 21 6 5.7887 -0.0136 -0.0052 22 8 6.2742 0.5546 1.2127 23 14 6.3953 -1.7685 -0.1569 24 6 3.5819 -1.1956 0.0005 25 6 2.1984 -1.1939 0.0005 26 1 -0.3633 0.1177 -1.0209 27 1 -0.3633 -0.9430 0.4084 28 1 -0.3633 0.8253 0.6123 29 1 0.8180 4.9482 -0.8274 30 1 0.6492 4.8537 0.9419 31 1 1.7518 7.9411 -0.7964 32 1 0.5098 7.3859 0.4071 33 1 2.4056 11.1508 1.2799 34 1 3.8469 11.3894 2.2963 35 1 3.8033 10.0615 1.1115 36 1 1.3605 9.8797 4.6195 37 1 2.4207 11.2827 4.3454 38 1 0.9788 11.0446 3.3289 39 1 4.3383 8.4267 2.9235 40 1 4.3820 9.7542 4.1087 41 1 3.3218 8.3512 4.3827 42 1 1.7960 6.1379 2.4252 43 1 3.5768 6.1695 2.0659 44 1 4.1504 2.1301 0.0010 45 1 6.1534 0.5711 -0.8497 46 1 5.9882 0.0842 2.0077 47 1 7.8801 -1.7940 -0.1631 48 1 5.8785 -2.5838 0.9717 49 1 4.1182 -2.1331 0.0010 50 1 1.6585 -2.1292 0.0001 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_13429372_14598394.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:39:53 Heat of formation + Delta-G solvation = -116.366618 kcal Electronic energy + Delta-G solvation = -29060.886700 eV Core-core repulsion = 25020.634523 eV Total energy + Delta-G solvation = -4040.252177 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.186 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.79358 -40.93686 -40.22542 -38.57203 -37.87850 -37.13139 -33.96119 -33.89980 -32.66354 -29.81654 -29.18622 -28.41039 -28.31235 -26.66567 -25.78542 -25.14004 -23.75457 -22.71714 -21.43391 -20.86064 -20.58008 -18.83017 -18.50583 -17.89589 -17.43089 -17.33287 -16.85590 -16.59993 -16.40732 -16.13686 -15.99989 -15.82657 -15.46674 -14.95327 -14.87846 -14.62096 -14.40546 -14.21906 -14.00141 -13.84176 -13.48570 -13.38719 -13.26493 -13.20353 -13.04115 -13.03419 -12.89242 -12.88178 -12.82284 -12.68392 -12.39012 -12.15493 -12.11407 -11.79696 -11.74708 -11.71382 -11.33598 -11.20966 -11.06326 -10.63653 -10.35615 -10.16384 -9.77671 -5.02906 -0.38960 0.16915 1.20070 1.50684 1.52198 1.61108 1.90327 2.58241 2.70433 3.27903 3.38605 3.50955 3.51247 3.58574 3.72015 3.74926 3.80885 3.83562 3.88497 3.95165 4.04703 4.06562 4.11959 4.22677 4.28172 4.38672 4.46034 4.49387 4.54806 4.60495 4.62836 4.71658 4.73499 4.74372 4.77369 4.79849 4.82025 4.84154 4.87700 4.90287 4.98143 5.07028 5.08518 5.12708 5.22047 5.23293 5.27322 5.29067 5.32523 5.38464 5.58066 5.74122 6.33863 6.40535 6.79489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.010 4.010 3 C -0.132 4.132 4 C 0.508 3.492 5 O -0.499 6.499 6 O -0.351 6.351 7 C 0.082 3.918 8 C -0.111 4.111 9 H 0.105 0.895 10 C -0.126 4.126 11 C 0.062 3.938 12 H 0.093 0.907 13 O -0.361 6.361 14 C 0.105 3.895 15 C -0.179 4.179 16 C -0.139 4.139 17 C -0.176 4.176 18 C -0.149 4.149 19 C -0.029 4.029 20 C -0.141 4.141 21 C -0.073 4.073 22 O -0.528 6.528 23 Si 0.686 3.314 24 C -0.077 4.077 25 C -0.129 4.129 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.091 0.909 43 H 0.073 0.927 44 H 0.141 0.859 45 H 0.120 0.880 46 H 0.376 0.624 47 H -0.256 1.256 48 H -0.259 1.259 49 H 0.134 0.866 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.615 -0.903 -1.324 2.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.011 4.011 3 C -0.133 4.133 4 C 0.354 3.646 5 O -0.388 6.388 6 O -0.268 6.268 7 C 0.008 3.992 8 C -0.130 4.130 9 H 0.123 0.877 10 C -0.164 4.164 11 C 0.004 3.996 12 H 0.111 0.889 13 O -0.281 6.281 14 C 0.066 3.934 15 C -0.236 4.236 16 C -0.196 4.196 17 C -0.234 4.234 18 C -0.186 4.186 19 C -0.048 4.048 20 C -0.141 4.141 21 C -0.183 4.183 22 O -0.334 6.334 23 Si 0.587 3.413 24 C -0.095 4.095 25 C -0.146 4.146 26 H 0.099 0.901 27 H 0.084 0.916 28 H 0.112 0.888 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.109 0.891 43 H 0.091 0.909 44 H 0.159 0.841 45 H 0.138 0.862 46 H 0.224 0.776 47 H -0.180 1.180 48 H -0.184 1.184 49 H 0.151 0.849 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.796 -1.083 -1.351 2.494 hybrid contribution 0.052 0.460 1.026 1.126 sum 1.848 -0.622 -0.325 1.977 Atomic orbital electron populations 1.21176 0.89557 1.03604 1.04015 1.20140 0.97120 0.91195 0.92620 1.19000 0.93518 0.90106 1.10670 1.21114 0.85923 0.84433 0.73146 1.90817 1.14880 1.87628 1.45478 1.86533 1.41879 1.14911 1.83441 1.23093 0.93191 0.79950 1.02934 1.22361 0.99714 0.92184 0.98719 0.87654 1.23232 1.00729 0.93903 0.98537 1.23564 0.96251 0.89764 0.89977 0.88942 1.88041 1.35952 1.47856 1.56204 1.21542 0.90919 0.88459 0.92522 1.22470 1.01681 1.00112 0.99382 1.21770 1.00164 0.99360 0.98332 1.22472 0.98514 1.01250 1.01156 1.23635 1.03001 0.96010 0.95991 1.21304 0.92238 0.98719 0.92506 1.20240 0.96411 0.93240 1.04208 1.25024 0.91318 1.11819 0.90120 1.86618 1.75338 1.56126 1.15344 0.95000 0.81150 0.75138 0.89984 1.21353 0.94651 0.97510 0.95958 1.21017 0.93735 0.97716 1.02169 0.90053 0.91614 0.88819 0.90697 0.90696 0.90307 0.88696 0.91589 0.91346 0.92216 0.91764 0.91060 0.91747 0.92269 0.91526 0.91678 0.89079 0.90856 0.84098 0.86200 0.77593 1.18049 1.18414 0.84887 0.84394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.12 8.73 36.01 0.31 0.20 16 2 C -0.01 -0.01 5.91 -104.21 -0.62 -0.63 16 3 C -0.13 -0.27 5.87 -104.99 -0.62 -0.89 16 4 C 0.51 1.69 7.83 34.61 0.27 1.96 16 5 O -0.50 -2.49 13.14 -19.25 -0.25 -2.75 16 6 O -0.35 -0.84 9.49 -40.53 -0.38 -1.22 16 7 C 0.08 0.08 5.31 37.15 0.20 0.28 16 8 C -0.11 0.04 4.02 -89.81 -0.36 -0.32 16 9 H 0.11 -0.10 8.14 -51.93 -0.42 -0.52 16 10 C -0.13 0.06 7.47 -25.92 -0.19 -0.13 16 11 C 0.06 0.01 2.82 -25.92 -0.07 -0.06 16 12 H 0.09 -0.07 5.55 -51.93 -0.29 -0.36 16 13 O -0.36 -0.72 10.00 -35.23 -0.35 -1.08 16 14 C 0.10 0.05 1.11 -90.62 -0.10 -0.06 16 15 C -0.18 0.09 8.38 37.15 0.31 0.40 16 16 C -0.14 0.00 8.84 37.16 0.33 0.33 16 17 C -0.18 0.04 8.38 37.16 0.31 0.35 16 18 C -0.15 -0.02 7.46 -25.92 -0.19 -0.22 16 19 C -0.03 -0.03 9.25 -39.17 -0.36 -0.39 16 20 C -0.14 0.04 5.35 -104.68 -0.56 -0.52 16 21 C -0.07 0.06 2.80 36.00 0.10 0.16 16 22 O -0.53 -0.37 12.83 -35.23 -0.45 -0.82 16 23 Si 0.69 -1.15 29.87 -169.99 -5.08 -6.23 16 24 C -0.08 0.08 8.67 -39.48 -0.34 -0.26 16 25 C -0.13 0.08 9.66 -39.64 -0.38 -0.31 16 26 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 27 H 0.06 -0.05 8.04 -51.93 -0.42 -0.47 16 28 H 0.09 0.25 5.86 -51.93 -0.30 -0.05 16 29 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 30 H 0.07 0.10 7.84 -51.93 -0.41 -0.30 16 31 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 32 H 0.09 0.01 8.10 -51.93 -0.42 -0.41 16 33 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 34 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 35 H 0.06 -0.05 6.25 -51.93 -0.32 -0.38 16 36 H 0.06 0.03 8.14 -51.93 -0.42 -0.40 16 37 H 0.07 -0.09 8.14 -51.92 -0.42 -0.51 16 38 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 39 H 0.06 -0.02 7.02 -51.93 -0.36 -0.39 16 40 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 41 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 42 H 0.09 0.10 7.90 -51.93 -0.41 -0.31 16 43 H 0.07 0.00 8.14 -51.93 -0.42 -0.43 16 44 H 0.14 0.10 7.63 -52.49 -0.40 -0.30 16 45 H 0.12 -0.19 7.96 -51.93 -0.41 -0.60 16 46 H 0.38 -0.78 8.70 45.56 0.40 -0.38 16 47 H -0.26 -0.45 7.11 56.52 0.40 -0.05 16 48 H -0.26 -0.01 7.01 56.52 0.40 0.38 16 49 H 0.13 -0.40 4.82 -52.49 -0.25 -0.65 16 50 H 0.14 -0.37 8.06 -52.49 -0.42 -0.80 16 LS Contribution 398.72 15.07 6.01 6.01 Total: 0.00 -5.78 398.72 -10.78 -16.57 By element: Atomic # 1 Polarization: -2.08 SS G_CDS: -8.31 Total: -10.39 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -1.97 Total: -0.10 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -1.44 Total: -5.86 kcal Atomic # 14 Polarization: -1.15 SS G_CDS: -5.08 Total: -6.23 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -5.78 -10.78 -16.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13429372_14598394.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.798 kcal (2) G-P(sol) polarization free energy of solvation -5.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds