Wall clock time and date at job start Sat Mar 6 2021 03:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.39608 * 120.07540 * 2 1 4 4 C 1.47727 * 120.14952 * 359.95719 * 3 2 1 5 5 O 1.21475 * 119.99976 * 353.78786 * 4 3 2 6 6 O 1.34714 * 120.00301 * 173.79693 * 4 3 2 7 7 C 1.45200 * 117.00214 * 179.97438 * 6 4 3 8 8 C 1.52995 * 109.46964 * 179.97438 * 7 6 4 9 9 H 1.08999 * 112.84729 * 43.80867 * 8 7 6 10 10 C 1.53784 * 113.61193 * 175.00469 * 8 7 6 11 11 C 1.53784 * 87.08059 * 139.98515 * 10 8 7 12 12 H 1.08995 * 113.61962 * 89.11714 * 11 10 8 13 13 O 1.42901 * 113.60912 * 220.01816 * 11 10 8 14 14 C 1.42905 * 113.99734 * 209.99900 * 13 11 10 15 15 C 1.52994 * 109.47233 * 59.99735 * 14 13 11 16 16 C 1.52995 * 109.46716 * 180.02562 * 14 13 11 17 17 C 1.53002 * 109.46929 * 299.99720 * 14 13 11 18 18 C 1.53778 * 113.61687 * 272.50007 * 8 7 6 19 19 C 1.39639 * 119.70229 * 179.97438 * 3 2 1 20 20 C 1.37929 * 119.84888 * 0.02562 * 19 3 2 21 21 C 1.50698 * 119.92526 * 179.72238 * 20 19 3 22 22 O 1.42894 * 109.47404 * 65.00129 * 21 20 19 23 23 Si 1.86302 * 109.46878 * 185.00214 * 21 20 19 24 24 C 1.38389 * 120.14611 * 359.97438 * 20 19 3 25 25 C 1.37960 * 120.07352 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.46808 * 83.42497 * 1 2 3 27 27 H 1.08997 * 109.47215 * 203.41897 * 1 2 3 28 28 H 1.08994 * 109.47238 * 323.42737 * 1 2 3 29 29 H 1.08995 * 109.47154 * 300.00435 * 7 6 4 30 30 H 1.09004 * 109.46799 * 59.99856 * 7 6 4 31 31 H 1.09004 * 113.60854 * 254.52637 * 10 8 7 32 32 H 1.08995 * 113.61735 * 25.34766 * 10 8 7 33 33 H 1.09003 * 109.46589 * 60.00239 * 15 14 13 34 34 H 1.08997 * 109.47114 * 179.97438 * 15 14 13 35 35 H 1.08998 * 109.47061 * 300.00245 * 15 14 13 36 36 H 1.09000 * 109.47669 * 60.00229 * 16 14 13 37 37 H 1.09009 * 109.46989 * 179.97438 * 16 14 13 38 38 H 1.08998 * 109.47430 * 299.99485 * 16 14 13 39 39 H 1.09003 * 109.46627 * 60.00136 * 17 14 13 40 40 H 1.08993 * 109.47197 * 180.02562 * 17 14 13 41 41 H 1.08999 * 109.47266 * 300.00729 * 17 14 13 42 42 H 1.09007 * 113.61507 * 334.56912 * 18 8 7 43 43 H 1.08998 * 113.61459 * 105.47105 * 18 8 7 44 44 H 1.08001 * 120.07769 * 180.02562 * 19 3 2 45 45 H 1.09001 * 109.47200 * 304.99685 * 21 20 19 46 46 H 0.96704 * 114.00381 * 59.99543 * 22 21 20 47 47 H 1.48502 * 110.00095 * 180.02562 * 23 21 20 48 48 H 1.48507 * 109.99705 * 301.31659 * 23 21 20 49 49 H 1.07998 * 119.84993 * 180.02562 * 24 20 19 50 50 H 1.07997 * 119.93185 * 0.05089 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2067 1.2081 0.0000 4 6 1.4731 2.4904 -0.0010 5 8 0.2638 2.4982 -0.1156 6 8 2.1452 3.6511 0.1251 7 6 1.3596 4.8721 0.1153 8 6 2.2890 6.0777 0.2690 9 1 3.1839 6.0036 -0.3488 10 6 1.5678 7.4307 0.1490 11 6 2.4641 7.9212 1.2984 12 1 3.4076 8.3517 0.9632 13 8 1.7812 8.7463 2.2445 14 6 2.6157 9.7195 2.8760 15 6 3.2108 10.6469 1.8146 16 6 1.7841 10.5407 3.8633 17 6 3.7458 9.0121 3.6267 18 6 2.5777 6.4504 1.7327 19 6 3.6031 1.1990 0.0005 20 6 4.2818 -0.0017 0.0005 21 6 5.7887 -0.0136 -0.0052 22 8 6.2742 0.5546 1.2127 23 14 6.3953 -1.7685 -0.1569 24 6 3.5819 -1.1956 0.0005 25 6 2.1984 -1.1939 0.0005 26 1 -0.3633 0.1177 -1.0209 27 1 -0.3633 -0.9430 0.4084 28 1 -0.3633 0.8253 0.6123 29 1 0.8180 4.9482 -0.8274 30 1 0.6492 4.8537 0.9419 31 1 1.7518 7.9411 -0.7964 32 1 0.5098 7.3859 0.4071 33 1 2.4056 11.1508 1.2799 34 1 3.8469 11.3894 2.2963 35 1 3.8033 10.0615 1.1115 36 1 1.3605 9.8797 4.6195 37 1 2.4207 11.2827 4.3454 38 1 0.9788 11.0446 3.3289 39 1 4.3383 8.4267 2.9235 40 1 4.3820 9.7542 4.1087 41 1 3.3218 8.3512 4.3827 42 1 1.7960 6.1379 2.4252 43 1 3.5768 6.1695 2.0659 44 1 4.1504 2.1301 0.0010 45 1 6.1534 0.5711 -0.8497 46 1 5.9882 0.0842 2.0077 47 1 7.8801 -1.7940 -0.1631 48 1 5.8785 -2.5838 0.9717 49 1 4.1182 -2.1331 0.0010 50 1 1.6585 -2.1292 0.0001 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13429372_14598394.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:39:52 Heat of formation + Delta-G solvation = -108.861651 kcal Electronic energy + Delta-G solvation = -29060.561260 eV Core-core repulsion = 25020.634523 eV Total energy + Delta-G solvation = -4039.926737 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.186 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.94039 -40.96177 -40.28688 -38.63333 -37.88916 -37.30132 -33.98489 -33.94003 -32.69036 -29.87890 -29.20710 -28.37316 -28.31360 -26.67881 -25.83875 -25.14281 -23.78952 -22.78064 -21.51784 -20.87578 -20.60231 -18.93689 -18.57679 -17.94834 -17.58815 -17.43017 -16.82574 -16.62298 -16.39547 -16.15373 -16.02275 -15.85270 -15.50486 -15.01893 -14.83888 -14.62584 -14.44114 -14.30710 -14.00843 -13.93329 -13.51594 -13.43224 -13.29336 -13.23615 -13.06215 -13.01345 -12.91608 -12.91322 -12.80995 -12.67862 -12.43953 -12.18119 -12.11712 -11.87189 -11.79323 -11.69256 -11.36955 -11.28641 -11.17432 -10.61704 -10.39337 -10.17818 -9.78423 -4.90508 -0.45173 0.17203 1.29401 1.36453 1.48913 1.60584 1.98158 2.55153 2.69609 3.31213 3.38171 3.48632 3.54808 3.56497 3.72619 3.75195 3.81690 3.83991 3.89531 3.95575 4.05147 4.08222 4.10517 4.16479 4.27049 4.37645 4.44970 4.47105 4.60602 4.64055 4.65074 4.70392 4.73091 4.73537 4.74135 4.76516 4.82025 4.87963 4.89627 4.91861 4.97328 5.04141 5.09088 5.11894 5.17248 5.22927 5.27169 5.30506 5.31215 5.37090 5.49888 5.74445 6.39289 6.48346 6.58532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.023 4.023 3 C -0.150 4.150 4 C 0.504 3.496 5 O -0.523 6.523 6 O -0.353 6.353 7 C 0.080 3.920 8 C -0.102 4.102 9 H 0.116 0.884 10 C -0.124 4.124 11 C 0.062 3.938 12 H 0.105 0.895 13 O -0.382 6.382 14 C 0.098 3.902 15 C -0.177 4.177 16 C -0.140 4.140 17 C -0.174 4.174 18 C -0.149 4.149 19 C -0.036 4.036 20 C -0.139 4.139 21 C -0.083 4.083 22 O -0.548 6.548 23 Si 0.772 3.228 24 C -0.071 4.071 25 C -0.125 4.125 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.138 0.862 45 H 0.126 0.874 46 H 0.387 0.613 47 H -0.305 1.305 48 H -0.275 1.275 49 H 0.157 0.843 50 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.499 -1.768 -1.742 3.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.024 4.024 3 C -0.152 4.152 4 C 0.352 3.648 5 O -0.415 6.415 6 O -0.269 6.269 7 C 0.006 3.994 8 C -0.120 4.120 9 H 0.134 0.866 10 C -0.161 4.161 11 C 0.004 3.996 12 H 0.122 0.878 13 O -0.302 6.302 14 C 0.059 3.941 15 C -0.234 4.234 16 C -0.197 4.197 17 C -0.231 4.231 18 C -0.187 4.187 19 C -0.054 4.054 20 C -0.139 4.139 21 C -0.192 4.192 22 O -0.356 6.356 23 Si 0.677 3.323 24 C -0.089 4.089 25 C -0.142 4.142 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.156 0.844 45 H 0.144 0.856 46 H 0.236 0.764 47 H -0.233 1.233 48 H -0.201 1.201 49 H 0.174 0.826 50 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.662 -1.930 -1.768 3.733 hybrid contribution -0.174 0.731 1.191 1.408 sum 2.487 -1.200 -0.577 2.821 Atomic orbital electron populations 1.21105 0.89725 1.03729 1.03409 1.20307 0.97244 0.91636 0.93196 1.19087 0.94036 0.89805 1.12229 1.21483 0.85814 0.85052 0.72501 1.90801 1.15843 1.87977 1.46843 1.86536 1.42041 1.15140 1.83227 1.23177 0.93484 0.80064 1.02630 1.22326 0.99729 0.91485 0.98483 0.86613 1.23214 1.00166 0.93752 0.98983 1.23653 0.96725 0.89397 0.89808 0.87784 1.88019 1.37060 1.48424 1.56722 1.21689 0.91031 0.88496 0.92899 1.22446 1.01632 1.00120 0.99186 1.21798 1.00301 0.99471 0.98128 1.22448 0.98398 1.01342 1.00952 1.23602 1.02661 0.96373 0.96059 1.21316 0.91822 0.99293 0.92959 1.20327 0.96667 0.93130 1.03764 1.25292 0.90953 1.13016 0.89899 1.86590 1.75659 1.57091 1.16291 0.94049 0.77135 0.72967 0.88150 1.21621 0.94649 0.98043 0.94568 1.21314 0.94048 0.97934 1.00914 0.90532 0.89637 0.90992 0.90628 0.91560 0.88997 0.89541 0.92125 0.90373 0.91716 0.92534 0.89672 0.92249 0.92017 0.90506 0.92597 0.90421 0.90573 0.84449 0.85626 0.76415 1.23349 1.20143 0.82558 0.81836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.31 8.73 71.24 0.62 0.31 16 2 C -0.02 -0.06 5.91 -19.60 -0.12 -0.18 16 3 C -0.15 -0.77 5.87 -20.10 -0.12 -0.89 16 4 C 0.50 4.30 7.83 70.33 0.55 4.85 16 5 O -0.52 -6.44 13.14 19.92 0.26 -6.18 16 6 O -0.35 -2.27 9.49 -56.24 -0.53 -2.81 16 7 C 0.08 0.29 5.31 71.98 0.38 0.67 16 8 C -0.10 0.01 4.02 -10.27 -0.04 -0.03 16 9 H 0.12 -0.22 8.14 -2.39 -0.02 -0.24 16 10 C -0.12 0.05 7.47 31.12 0.23 0.28 16 11 C 0.06 0.05 2.82 31.12 0.09 0.14 16 12 H 0.10 -0.19 5.55 -2.39 -0.01 -0.20 16 13 O -0.38 -1.86 10.00 -148.98 -1.49 -3.35 16 14 C 0.10 0.11 1.11 -10.80 -0.01 0.10 16 15 C -0.18 0.24 8.38 71.98 0.60 0.84 16 16 C -0.14 -0.07 8.84 71.98 0.64 0.57 16 17 C -0.17 0.06 8.38 71.98 0.60 0.66 16 18 C -0.15 -0.20 7.46 31.12 0.23 0.03 16 19 C -0.04 -0.09 9.25 22.54 0.21 0.12 16 20 C -0.14 0.17 5.35 -19.90 -0.11 0.06 16 21 C -0.08 0.20 2.80 71.24 0.20 0.40 16 22 O -0.55 -0.67 12.83 -148.98 -1.91 -2.58 16 23 Si 0.77 -3.43 29.87 68.60 2.05 -1.38 16 24 C -0.07 0.27 8.67 22.33 0.19 0.47 16 25 C -0.12 0.33 9.66 22.23 0.21 0.54 16 26 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 27 H 0.08 -0.18 8.04 -2.39 -0.02 -0.20 16 28 H 0.07 0.52 5.86 -2.39 -0.01 0.51 16 29 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.07 0.34 7.84 -2.38 -0.02 0.32 16 31 H 0.09 -0.27 8.14 -2.38 -0.02 -0.29 16 32 H 0.09 0.12 8.10 -2.39 -0.02 0.11 16 33 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 34 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 35 H 0.06 -0.16 6.25 -2.39 -0.01 -0.17 16 36 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.08 -0.22 8.14 -2.38 -0.02 -0.24 16 38 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 39 H 0.06 -0.06 7.02 -2.39 -0.02 -0.07 16 40 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 41 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 42 H 0.08 0.32 7.90 -2.38 -0.02 0.30 16 43 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.14 0.34 7.63 -2.91 -0.02 0.32 16 45 H 0.13 -0.47 7.96 -2.39 -0.02 -0.49 16 46 H 0.39 -1.70 8.70 -74.05 -0.64 -2.34 16 47 H -0.31 -1.23 7.11 99.48 0.71 -0.52 16 48 H -0.28 0.46 7.01 99.48 0.70 1.16 16 49 H 0.16 -1.36 4.82 -2.91 -0.01 -1.38 16 50 H 0.16 -1.31 8.06 -2.91 -0.02 -1.33 16 Total: 0.00 -15.00 398.72 3.06 -11.94 By element: Atomic # 1 Polarization: -4.90 SS G_CDS: 0.31 Total: -4.58 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 4.37 Total: 8.94 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -3.67 Total: -14.92 kcal Atomic # 14 Polarization: -3.43 SS G_CDS: 2.05 Total: -1.38 kcal Total: -15.00 3.06 -11.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13429372_14598394.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.926 kcal (2) G-P(sol) polarization free energy of solvation -14.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds