Wall clock time and date at job start Sat Mar 6 2021 04:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39616 * 120.07496 * 2 1 4 4 C 1.47730 * 120.14727 * 0.04655 * 3 2 1 5 5 O 1.21467 * 120.00070 * 6.20207 * 4 3 2 6 6 O 1.34707 * 119.99416 * 186.20449 * 4 3 2 7 7 C 1.45205 * 116.99902 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47511 * 179.97438 * 7 6 4 9 9 H 1.08999 * 112.84690 * 45.33349 * 8 7 6 10 10 C 1.53777 * 113.61886 * 176.53029 * 8 7 6 11 11 C 1.53777 * 87.08156 * 139.98288 * 10 8 7 12 12 H 1.09006 * 113.61115 * 219.93519 * 11 10 8 13 13 N 1.46500 * 113.61507 * 89.12049 * 11 10 8 14 14 C 1.34770 * 120.00242 * 154.99883 * 13 11 10 15 15 O 1.21512 * 120.00017 * 359.97438 * 14 13 11 16 16 O 1.34636 * 120.00428 * 180.02562 * 14 13 11 17 17 C 1.45195 * 117.00541 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.46927 * 59.99740 * 17 16 14 19 19 C 1.52998 * 109.47232 * 179.97438 * 17 16 14 20 20 C 1.52996 * 109.47162 * 300.00006 * 17 16 14 21 21 C 1.53780 * 113.61864 * 274.14068 * 8 7 6 22 22 C 1.39643 * 119.70139 * 180.02562 * 3 2 1 23 23 C 1.37932 * 119.84716 * 359.75169 * 22 3 2 24 24 C 1.50696 * 119.92381 * 180.24375 * 23 22 3 25 25 O 1.42892 * 109.47901 * 300.27875 * 24 23 22 26 26 Si 1.86306 * 109.46952 * 180.27701 * 24 23 22 27 27 C 1.38392 * 120.14727 * 0.52712 * 23 22 3 28 28 C 1.37964 * 120.07677 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47252 * 276.55741 * 1 2 3 30 30 H 1.09007 * 109.46733 * 36.55644 * 1 2 3 31 31 H 1.08998 * 109.46607 * 156.55423 * 1 2 3 32 32 H 1.08999 * 109.47180 * 299.99812 * 7 6 4 33 33 H 1.09000 * 109.46702 * 59.99658 * 7 6 4 34 34 H 1.09003 * 113.61611 * 254.53400 * 10 8 7 35 35 H 1.09001 * 113.61268 * 25.43262 * 10 8 7 36 36 H 0.96998 * 119.99888 * 334.99883 * 13 11 10 37 37 H 1.08997 * 109.47180 * 60.00284 * 18 17 16 38 38 H 1.09008 * 109.47270 * 180.02562 * 18 17 16 39 39 H 1.08997 * 109.47325 * 300.00216 * 18 17 16 40 40 H 1.09000 * 109.46918 * 60.00328 * 19 17 16 41 41 H 1.09008 * 109.46959 * 180.02562 * 19 17 16 42 42 H 1.08997 * 109.47397 * 300.00036 * 19 17 16 43 43 H 1.08997 * 109.47546 * 59.99664 * 20 17 16 44 44 H 1.08994 * 109.47197 * 179.97438 * 20 17 16 45 45 H 1.09000 * 109.47127 * 299.99758 * 20 17 16 46 46 H 1.09006 * 113.61397 * 334.56815 * 21 8 7 47 47 H 1.09005 * 113.61626 * 105.46219 * 21 8 7 48 48 H 1.07996 * 120.07893 * 179.97438 * 22 3 2 49 49 H 1.09000 * 109.46815 * 60.28367 * 24 23 22 50 50 H 0.96693 * 114.00460 * 180.02562 * 25 24 23 51 51 H 1.48500 * 109.99731 * 60.00274 * 26 24 23 52 52 H 1.48494 * 110.00125 * 181.32421 * 26 24 23 53 53 H 1.07993 * 119.84331 * 179.72440 * 27 23 22 54 54 H 1.07993 * 119.92421 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2067 1.2082 0.0000 4 6 1.4730 2.4904 0.0010 5 8 0.2638 2.4982 0.1155 6 8 2.1452 3.6510 -0.1251 7 6 1.3595 4.8721 -0.1164 8 6 2.2890 6.0778 -0.2686 9 1 3.0361 5.9402 -1.0503 10 6 1.5460 7.4213 -0.3563 11 6 2.6575 8.0043 0.5322 12 1 2.2928 8.7019 1.2863 13 7 3.7983 8.5282 -0.2229 14 6 4.5809 9.4843 0.3153 15 8 4.3401 9.9122 1.4268 16 8 5.6291 9.9661 -0.3789 17 6 6.4280 10.9949 0.2627 18 6 7.0145 10.4469 1.5652 19 6 7.5649 11.4143 -0.6713 20 6 5.5466 12.2070 0.5705 21 6 2.8753 6.5758 1.0630 22 6 3.6031 1.1991 -0.0005 23 6 4.2818 -0.0017 0.0041 24 6 5.7887 -0.0135 0.0091 25 8 6.2743 0.6596 -1.1540 26 14 6.3958 -1.7749 0.0061 27 6 3.5819 -1.1956 -0.0017 28 6 2.1985 -1.1939 -0.0005 29 1 -0.3634 0.1174 1.0209 30 1 -0.3633 0.8256 -0.6121 31 1 -0.3632 -0.9428 -0.4089 32 1 0.6498 4.8534 -0.9434 33 1 0.8172 4.9485 0.8261 34 1 1.5238 7.8432 -1.3611 35 1 0.5661 7.4103 0.1210 36 1 3.9904 8.1869 -1.1103 37 1 7.6423 9.5833 1.3460 38 1 7.6138 11.2193 2.0472 39 1 6.2048 10.1477 2.2308 40 1 7.1473 11.8046 -1.5994 41 1 8.1649 12.1863 -0.1894 42 1 8.1927 10.5506 -0.8902 43 1 4.7369 11.9080 1.2360 44 1 6.1462 12.9791 1.0525 45 1 5.1288 12.5975 -0.3575 46 1 2.2595 6.3331 1.9291 47 1 3.9247 6.3159 1.2024 48 1 4.1504 2.1301 -0.0010 49 1 6.1530 0.4948 0.9018 50 1 7.2387 0.6900 -1.2170 51 1 5.9058 -2.4790 -1.2060 52 1 7.8801 -1.8005 0.0433 53 1 4.1183 -2.1329 -0.0025 54 1 1.6585 -2.1291 -0.0005 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13429372_15734084.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:03:54 Heat of formation + Delta-G solvation = -139.832796 kcal Electronic energy + Delta-G solvation = -34691.238943 eV Core-core repulsion = 29982.097334 eV Total energy + Delta-G solvation = -4709.141609 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.197 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.04776 -41.83045 -40.62627 -40.06309 -38.14980 -37.83718 -37.36492 -35.39555 -34.15524 -34.07669 -32.66747 -29.82375 -29.21677 -28.39565 -28.33032 -26.79464 -25.89745 -25.13707 -24.48302 -23.26811 -22.72598 -21.37722 -21.19560 -20.30282 -19.36835 -18.91501 -18.51425 -17.95061 -17.62847 -17.56973 -17.23078 -17.13265 -16.65228 -16.58145 -16.04620 -15.79264 -15.48595 -15.43588 -15.30356 -15.11427 -14.88566 -14.59085 -14.46954 -14.29050 -14.01879 -13.67313 -13.63668 -13.44353 -13.38404 -13.32760 -13.26052 -13.08338 -12.99590 -12.94717 -12.89842 -12.70018 -12.53793 -12.36487 -12.21795 -12.05407 -11.92225 -11.81999 -11.75934 -11.42985 -11.24756 -11.17557 -11.14921 -10.54537 -10.23548 -10.16739 -9.72990 -4.92805 -0.44124 0.18025 1.08959 1.27240 1.38778 1.52503 1.60843 1.68653 1.95280 2.53918 3.06771 3.29644 3.32734 3.36513 3.51069 3.65563 3.71018 3.71733 3.76828 3.77540 3.84931 3.89529 3.91489 4.14723 4.16929 4.28467 4.32992 4.34237 4.40143 4.44999 4.57875 4.58647 4.61791 4.69073 4.70548 4.71443 4.73701 4.76255 4.79586 4.84878 4.85694 4.87367 4.94144 4.98300 5.01872 5.04903 5.12372 5.18397 5.24417 5.25903 5.29070 5.30926 5.43837 5.50889 5.57506 5.74689 6.33391 6.57116 6.61784 7.28860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.025 4.025 3 C -0.152 4.152 4 C 0.507 3.493 5 O -0.521 6.521 6 O -0.355 6.355 7 C 0.074 3.926 8 C -0.104 4.104 9 H 0.107 0.893 10 C -0.119 4.119 11 C 0.133 3.867 12 H 0.098 0.902 13 N -0.684 5.684 14 C 0.646 3.354 15 O -0.592 6.592 16 O -0.370 6.370 17 C 0.127 3.873 18 C -0.180 4.180 19 C -0.138 4.138 20 C -0.180 4.180 21 C -0.145 4.145 22 C -0.038 4.038 23 C -0.105 4.105 24 C -0.087 4.087 25 O -0.558 6.558 26 Si 0.767 3.233 27 C -0.073 4.073 28 C -0.124 4.124 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.116 0.884 36 H 0.417 0.583 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.062 0.938 46 H 0.100 0.900 47 H 0.065 0.935 48 H 0.136 0.864 49 H 0.096 0.904 50 H 0.396 0.604 51 H -0.293 1.293 52 H -0.287 1.287 53 H 0.156 0.844 54 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.461 -2.578 0.045 3.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.025 4.025 3 C -0.153 4.153 4 C 0.354 3.646 5 O -0.412 6.412 6 O -0.272 6.272 7 C 0.001 3.999 8 C -0.122 4.122 9 H 0.125 0.875 10 C -0.157 4.157 11 C 0.028 3.972 12 H 0.116 0.884 13 N -0.343 5.343 14 C 0.400 3.600 15 O -0.482 6.482 16 O -0.284 6.284 17 C 0.091 3.909 18 C -0.238 4.238 19 C -0.195 4.195 20 C -0.237 4.237 21 C -0.184 4.184 22 C -0.056 4.056 23 C -0.106 4.106 24 C -0.195 4.195 25 O -0.368 6.368 26 Si 0.672 3.328 27 C -0.090 4.090 28 C -0.142 4.142 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.254 0.746 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.118 0.882 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.106 0.894 45 H 0.081 0.919 46 H 0.119 0.881 47 H 0.084 0.916 48 H 0.154 0.846 49 H 0.114 0.886 50 H 0.246 0.754 51 H -0.221 1.221 52 H -0.214 1.214 53 H 0.173 0.827 54 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.896 -2.760 0.100 3.350 hybrid contribution 0.729 0.924 -0.913 1.489 sum 2.625 -1.837 -0.813 3.305 Atomic orbital electron populations 1.21105 0.89410 1.03810 1.03496 1.20325 0.97412 0.91535 0.93259 1.19113 0.93878 0.90178 1.12115 1.21350 0.85750 0.84945 0.72540 1.90794 1.15638 1.87951 1.46813 1.86547 1.42178 1.15235 1.83215 1.23298 0.93657 0.79876 1.03076 1.22661 0.98474 0.91759 0.99351 0.87530 1.23326 0.98134 0.92503 1.01770 1.21848 0.85301 0.94988 0.95027 0.88359 1.44372 1.29211 1.39268 1.21492 1.18298 0.79477 0.79616 0.82604 1.90907 1.73910 1.62711 1.20714 1.86310 1.39205 1.54746 1.48179 1.22362 0.90054 0.84925 0.93552 1.22477 1.01875 1.02432 0.96968 1.21896 0.95608 1.02716 0.99277 1.22473 1.01134 0.97355 1.02762 1.23588 1.02159 0.94945 0.97659 1.21290 0.92055 0.99130 0.93124 1.19472 0.94597 0.93341 1.03141 1.25050 0.93169 1.10418 0.90860 1.86540 1.28247 1.78019 1.44025 0.94176 0.77983 0.74426 0.86211 1.21538 0.94810 0.97723 0.94972 1.21313 0.93775 0.98179 1.00932 0.90395 0.90782 0.89666 0.90581 0.90519 0.88672 0.86542 0.74649 0.91997 0.89396 0.91784 0.91152 0.88249 0.91227 0.91752 0.89419 0.91897 0.88124 0.91577 0.84570 0.88617 0.75361 1.22060 1.21447 0.82683 0.81599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.30 8.73 71.24 0.62 0.32 16 2 C -0.02 -0.08 5.92 -19.60 -0.12 -0.20 16 3 C -0.15 -0.91 5.87 -20.10 -0.12 -1.03 16 4 C 0.51 4.01 7.83 70.33 0.55 4.56 16 5 O -0.52 -5.72 13.14 19.94 0.26 -5.46 16 6 O -0.36 -1.86 9.49 -56.16 -0.53 -2.39 16 7 C 0.07 0.03 5.30 71.98 0.38 0.41 16 8 C -0.10 0.35 3.89 -10.27 -0.04 0.31 16 9 H 0.11 -0.38 8.14 -2.39 -0.02 -0.40 16 10 C -0.12 0.69 7.39 31.12 0.23 0.92 16 11 C 0.13 -0.14 4.33 45.57 0.20 0.06 16 12 H 0.10 0.21 7.46 -2.38 -0.02 0.19 16 13 N -0.68 -0.50 5.26 -567.35 -2.99 -3.49 16 14 C 0.65 4.54 8.06 129.79 1.05 5.59 16 15 O -0.59 -7.26 11.48 19.80 0.23 -7.04 16 16 O -0.37 -2.17 9.94 -55.45 -0.55 -2.72 16 17 C 0.13 0.41 1.13 -10.80 -0.01 0.40 16 18 C -0.18 -0.65 8.37 71.98 0.60 -0.04 16 19 C -0.14 0.25 8.85 71.98 0.64 0.89 16 20 C -0.18 -0.61 8.37 71.98 0.60 -0.01 16 21 C -0.14 0.20 7.44 31.18 0.23 0.43 16 22 C -0.04 -0.16 9.17 22.54 0.21 0.04 16 23 C -0.11 -0.16 5.42 -19.90 -0.11 -0.26 16 24 C -0.09 0.15 2.81 71.23 0.20 0.35 16 25 O -0.56 -0.71 12.74 -148.98 -1.90 -2.61 16 26 Si 0.77 -2.98 29.78 68.60 2.04 -0.93 16 27 C -0.07 0.10 8.67 22.33 0.19 0.29 16 28 C -0.12 0.14 9.66 22.23 0.21 0.36 16 29 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.07 0.49 5.86 -2.38 -0.01 0.48 16 31 H 0.08 -0.17 8.04 -2.39 -0.02 -0.19 16 32 H 0.08 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.08 0.02 7.87 -2.39 -0.02 0.00 16 34 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 35 H 0.12 -0.89 8.10 -2.39 -0.02 -0.91 16 36 H 0.42 -1.45 8.81 -92.71 -0.82 -2.26 16 37 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.09 0.00 8.14 -2.38 -0.02 -0.02 16 39 H 0.06 0.57 5.88 -2.39 -0.01 0.56 16 40 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 41 H 0.10 -0.51 8.14 -2.38 -0.02 -0.53 16 42 H 0.07 -0.14 8.14 -2.39 -0.02 -0.15 16 43 H 0.06 0.56 5.88 -2.39 -0.01 0.54 16 44 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 45 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 46 H 0.10 -0.21 7.92 -2.38 -0.02 -0.23 16 47 H 0.07 0.09 8.14 -2.38 -0.02 0.07 16 48 H 0.14 0.55 7.63 -2.91 -0.02 0.53 16 49 H 0.10 -0.51 7.96 -2.39 -0.02 -0.53 16 50 H 0.40 -2.63 8.74 -74.06 -0.65 -3.28 16 51 H -0.29 -0.83 7.11 99.48 0.71 -0.12 16 52 H -0.29 -0.21 7.11 99.48 0.71 0.50 16 53 H 0.16 -1.00 4.86 -2.91 -0.01 -1.01 16 54 H 0.17 -1.17 8.06 -2.91 -0.02 -1.19 16 Total: 0.00 -21.23 434.02 1.59 -19.64 By element: Atomic # 1 Polarization: -7.89 SS G_CDS: -0.50 Total: -8.39 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: 5.52 Total: 13.39 kcal Atomic # 7 Polarization: -0.50 SS G_CDS: -2.99 Total: -3.49 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -2.49 Total: -20.22 kcal Atomic # 14 Polarization: -2.98 SS G_CDS: 2.04 Total: -0.93 kcal Total: -21.23 1.59 -19.64 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13429372_15734084.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.188 kcal (2) G-P(sol) polarization free energy of solvation -21.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds