Wall clock time and date at job start Sat Mar 6 2021 04:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39610 * 120.07725 * 2 1 4 4 C 1.47728 * 120.14750 * 359.97438 * 3 2 1 5 5 O 1.21467 * 119.99855 * 5.99999 * 4 3 2 6 6 O 1.34702 * 119.99936 * 185.99814 * 4 3 2 7 7 C 1.45208 * 117.00047 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.47004 * 180.02562 * 7 6 4 9 9 H 1.08999 * 112.84831 * 316.19441 * 8 7 6 10 10 C 1.53780 * 113.61305 * 87.50473 * 8 7 6 11 11 C 1.53779 * 87.07987 * 139.97892 * 10 8 7 12 12 H 1.09002 * 113.61521 * 89.11456 * 11 10 8 13 13 N 1.46503 * 113.69029 * 220.00484 * 11 10 8 14 14 C 1.34775 * 119.99782 * 252.53176 * 13 11 10 15 15 O 1.21510 * 120.00550 * 0.02562 * 14 13 11 16 16 O 1.34644 * 119.99464 * 179.97438 * 14 13 11 17 17 C 1.45197 * 116.99389 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47526 * 60.00732 * 17 16 14 19 19 C 1.53004 * 109.46688 * 180.02562 * 17 16 14 20 20 C 1.52995 * 109.47659 * 300.00180 * 17 16 14 21 21 C 1.53781 * 113.61104 * 185.00152 * 8 7 6 22 22 C 1.39647 * 119.70097 * 179.72898 * 3 2 1 23 23 C 1.37926 * 119.84706 * 0.52138 * 22 3 2 24 24 C 1.50705 * 119.92261 * 179.72455 * 23 22 3 25 25 O 1.42896 * 109.47303 * 300.02684 * 24 23 22 26 26 Si 1.86299 * 109.46851 * 180.02562 * 24 23 22 27 27 C 1.38382 * 120.15053 * 359.74903 * 23 22 3 28 28 C 1.37966 * 120.07651 * 180.27319 * 2 1 3 29 29 H 1.09001 * 109.47237 * 276.32031 * 1 2 3 30 30 H 1.09000 * 109.47391 * 36.31848 * 1 2 3 31 31 H 1.09004 * 109.47064 * 156.32322 * 1 2 3 32 32 H 1.08997 * 109.47014 * 299.99838 * 7 6 4 33 33 H 1.08999 * 109.46748 * 59.99914 * 7 6 4 34 34 H 1.09006 * 113.60992 * 254.52294 * 10 8 7 35 35 H 1.08994 * 113.61884 * 25.43155 * 10 8 7 36 36 H 0.97002 * 119.99406 * 72.53738 * 13 11 10 37 37 H 1.08997 * 109.47031 * 59.99245 * 18 17 16 38 38 H 1.08996 * 109.47548 * 179.97438 * 18 17 16 39 39 H 1.09003 * 109.46680 * 299.99966 * 18 17 16 40 40 H 1.08996 * 109.47152 * 60.00180 * 19 17 16 41 41 H 1.09008 * 109.47374 * 180.02562 * 19 17 16 42 42 H 1.09003 * 109.47278 * 299.99877 * 19 17 16 43 43 H 1.08998 * 109.47120 * 59.99989 * 20 17 16 44 44 H 1.09002 * 109.47644 * 180.02562 * 20 17 16 45 45 H 1.08996 * 109.47201 * 300.00444 * 20 17 16 46 46 H 1.09001 * 113.61386 * 334.56266 * 21 8 7 47 47 H 1.09003 * 113.61613 * 105.38517 * 21 8 7 48 48 H 1.08001 * 120.07675 * 180.27155 * 22 3 2 49 49 H 1.08997 * 109.46788 * 60.02708 * 24 23 22 50 50 H 0.96699 * 113.99998 * 180.02562 * 25 24 23 51 51 H 1.48495 * 110.00440 * 298.68669 * 26 24 23 52 52 H 1.48504 * 109.99861 * 60.00539 * 26 24 23 53 53 H 1.08001 * 119.85117 * 179.97438 * 27 23 22 54 54 H 1.07994 * 119.92871 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2066 1.2081 0.0000 4 6 1.4730 2.4904 -0.0006 5 8 0.2633 2.4980 0.1089 6 8 2.1456 3.6511 -0.1225 7 6 1.3600 4.8722 -0.1145 8 6 2.2901 6.0780 -0.2629 9 1 3.1825 6.0031 0.3584 10 6 2.5847 6.4524 -1.7251 11 6 2.4693 7.9227 -1.2894 12 1 3.4116 8.3527 -0.9498 13 7 1.7738 8.7714 -2.2601 14 6 2.4679 9.6625 -2.9954 15 8 3.6706 9.7617 -2.8535 16 8 1.8287 10.4421 -3.8878 17 6 2.6398 11.3786 -4.6450 18 6 3.6901 10.6096 -5.4490 19 6 1.7454 12.1713 -5.6004 20 6 3.3382 12.3420 -3.6834 21 6 1.5685 7.4308 -0.1442 22 6 3.6031 1.1990 0.0057 23 6 4.2817 -0.0018 0.0005 24 6 5.7887 -0.0136 0.0004 25 8 6.2703 0.6618 -1.1631 26 14 6.3958 -1.7749 -0.0081 27 6 3.5819 -1.1956 -0.0052 28 6 2.1984 -1.1939 -0.0057 29 1 -0.3634 0.1131 1.0214 30 1 -0.3634 0.8280 -0.6086 31 1 -0.3633 -0.9412 -0.4127 32 1 0.6531 4.8549 -0.9440 33 1 0.8145 4.9472 0.8262 34 1 3.5852 6.1719 -2.0544 35 1 1.8059 6.1409 -2.4210 36 1 0.8137 8.6919 -2.3735 37 1 3.1925 9.9233 -6.1340 38 1 4.2987 11.3126 -6.0177 39 1 4.3272 10.0451 -4.7681 40 1 0.9974 12.7192 -5.0274 41 1 2.3543 12.8741 -6.1692 42 1 1.2475 11.4852 -6.2856 43 1 3.9753 11.7776 -3.0025 44 1 3.9468 13.0453 -4.2519 45 1 2.5900 12.8898 -3.1107 46 1 0.5118 7.3867 -0.4081 47 1 1.7473 7.9395 0.8031 48 1 4.1504 2.1300 0.0102 49 1 6.1560 0.4930 0.8928 50 1 7.2345 0.6924 -1.2293 51 1 5.9281 -2.4793 1.2126 52 1 5.9017 -2.4766 -1.2201 53 1 4.1182 -2.1331 -0.0097 54 1 1.6585 -2.1292 -0.0106 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13429372_15734238.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:03:59 Heat of formation + Delta-G solvation = -141.595657 kcal Electronic energy + Delta-G solvation = -34439.352399 eV Core-core repulsion = 29730.134346 eV Total energy + Delta-G solvation = -4709.218053 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.197 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.04110 -41.85855 -40.64814 -40.07786 -38.15251 -37.76217 -37.34821 -35.42933 -34.27559 -34.16108 -32.81555 -29.85395 -29.25521 -28.38922 -28.32293 -26.79281 -25.96566 -25.21602 -24.64147 -23.09728 -22.36621 -21.56006 -21.36080 -20.53055 -19.18916 -18.91226 -18.36168 -18.17681 -17.65667 -17.61665 -17.33136 -17.19745 -16.72380 -16.60277 -16.30245 -15.71390 -15.52142 -15.46870 -15.32645 -15.02995 -14.71619 -14.61173 -14.43242 -14.38150 -14.14594 -13.65451 -13.52587 -13.45272 -13.37893 -13.30656 -13.21175 -13.10482 -13.02252 -12.91631 -12.88976 -12.67836 -12.54665 -12.45796 -12.35252 -12.24030 -12.00198 -11.92335 -11.80561 -11.41824 -11.33357 -11.24724 -11.12486 -10.38684 -10.31947 -10.18795 -9.81901 -4.93785 -0.58724 0.04912 1.13104 1.25554 1.30283 1.47741 1.64797 1.70755 1.95186 2.42172 3.10593 3.27776 3.30076 3.36091 3.46245 3.60645 3.65605 3.70347 3.71687 3.72225 3.78046 3.81196 3.92354 4.07375 4.13564 4.17085 4.21319 4.25314 4.37394 4.48133 4.53647 4.59105 4.59473 4.61694 4.66086 4.66708 4.72880 4.74303 4.74775 4.77415 4.83908 4.85462 4.91374 4.91843 4.98479 5.03636 5.06988 5.11578 5.14946 5.20201 5.25049 5.30113 5.39846 5.46888 5.56979 5.59879 6.36967 6.55438 6.90278 7.31111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.024 4.024 3 C -0.147 4.147 4 C 0.510 3.490 5 O -0.518 6.518 6 O -0.352 6.352 7 C 0.077 3.923 8 C -0.100 4.100 9 H 0.114 0.886 10 C -0.148 4.148 11 C 0.137 3.863 12 H 0.110 0.890 13 N -0.691 5.691 14 C 0.643 3.357 15 O -0.593 6.593 16 O -0.371 6.371 17 C 0.127 3.873 18 C -0.180 4.180 19 C -0.138 4.138 20 C -0.180 4.180 21 C -0.120 4.120 22 C -0.032 4.032 23 C -0.110 4.110 24 C -0.080 4.080 25 O -0.564 6.564 26 Si 0.774 3.226 27 C -0.094 4.094 28 C -0.127 4.127 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.417 0.583 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.062 0.938 46 H 0.107 0.893 47 H 0.098 0.902 48 H 0.148 0.852 49 H 0.098 0.902 50 H 0.405 0.595 51 H -0.283 1.283 52 H -0.295 1.295 53 H 0.131 0.869 54 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.295 -0.279 1.125 2.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.025 4.025 3 C -0.148 4.148 4 C 0.357 3.643 5 O -0.410 6.410 6 O -0.269 6.269 7 C 0.004 3.996 8 C -0.119 4.119 9 H 0.132 0.868 10 C -0.186 4.186 11 C 0.033 3.967 12 H 0.127 0.873 13 N -0.350 5.350 14 C 0.397 3.603 15 O -0.484 6.484 16 O -0.285 6.285 17 C 0.090 3.910 18 C -0.237 4.237 19 C -0.195 4.195 20 C -0.237 4.237 21 C -0.158 4.158 22 C -0.050 4.050 23 C -0.110 4.110 24 C -0.189 4.189 25 O -0.374 6.374 26 Si 0.679 3.321 27 C -0.112 4.112 28 C -0.144 4.144 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.254 0.746 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.117 0.883 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.081 0.919 46 H 0.125 0.875 47 H 0.116 0.884 48 H 0.166 0.834 49 H 0.115 0.885 50 H 0.256 0.744 51 H -0.210 1.210 52 H -0.222 1.222 53 H 0.148 0.852 54 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.688 -0.846 1.049 2.160 hybrid contribution -0.884 0.281 -0.012 0.928 sum 0.804 -0.565 1.037 1.428 Atomic orbital electron populations 1.21119 0.89008 1.03973 1.03680 1.20301 0.97630 0.91309 0.93248 1.19166 0.93982 0.90294 1.11348 1.21199 0.85693 0.84844 0.72581 1.90793 1.15529 1.87925 1.46703 1.86543 1.42053 1.15131 1.83146 1.23277 0.93465 0.79674 1.03224 1.22333 0.99878 0.91669 0.97990 0.86810 1.23621 1.03115 0.95234 0.96669 1.22536 0.97339 0.88368 0.88412 0.87253 1.44774 1.12058 1.37904 1.40222 1.18429 0.84122 0.79060 0.78724 1.90901 1.14360 1.72179 1.70989 1.86316 1.42568 1.49472 1.50157 1.22355 0.90991 0.87031 0.90586 1.22471 0.99244 1.01574 1.00431 1.21894 0.99901 0.99723 0.97963 1.22469 1.01469 0.99423 1.00310 1.23354 1.00206 0.93292 0.98940 1.21369 0.91997 0.99146 0.92473 1.19698 0.95624 0.92990 1.02684 1.24842 0.91300 1.10834 0.91941 1.86442 1.29126 1.79461 1.42404 0.94167 0.89328 0.72011 0.76546 1.21385 0.95268 0.97373 0.97143 1.21232 0.93509 0.98447 1.01253 0.90224 0.90225 0.89858 0.90711 0.90158 0.91233 0.89189 0.74575 0.92090 0.89419 0.91774 0.91141 0.88282 0.91283 0.91742 0.89447 0.91907 0.87464 0.88391 0.83418 0.88455 0.74376 1.21012 1.22245 0.85212 0.82254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.47 8.75 71.23 0.62 0.15 16 2 C -0.02 -0.14 5.91 -19.60 -0.12 -0.25 16 3 C -0.15 -1.05 5.87 -20.10 -0.12 -1.17 16 4 C 0.51 4.11 7.83 70.33 0.55 4.67 16 5 O -0.52 -5.69 13.12 19.94 0.26 -5.43 16 6 O -0.35 -1.75 9.49 -56.12 -0.53 -2.28 16 7 C 0.08 0.00 5.31 71.98 0.38 0.38 16 8 C -0.10 0.35 4.02 -10.27 -0.04 0.30 16 9 H 0.11 -0.43 8.14 -2.39 -0.02 -0.45 16 10 C -0.15 0.18 7.43 31.12 0.23 0.41 16 11 C 0.14 -0.17 4.24 45.52 0.19 0.02 16 12 H 0.11 0.21 7.46 -2.39 -0.02 0.19 16 13 N -0.69 -0.37 5.36 -567.59 -3.04 -3.41 16 14 C 0.64 4.56 8.06 129.79 1.05 5.60 16 15 O -0.59 -7.32 11.48 19.81 0.23 -7.09 16 16 O -0.37 -2.23 9.94 -55.53 -0.55 -2.78 16 17 C 0.13 0.44 1.13 -10.79 -0.01 0.43 16 18 C -0.18 -0.70 8.37 71.98 0.60 -0.10 16 19 C -0.14 0.22 8.85 71.98 0.64 0.86 16 20 C -0.18 -0.63 8.37 71.98 0.60 -0.02 16 21 C -0.12 0.74 7.39 31.12 0.23 0.97 16 22 C -0.03 -0.17 9.17 22.54 0.21 0.04 16 23 C -0.11 -0.46 5.42 -19.90 -0.11 -0.57 16 24 C -0.08 0.12 2.81 71.24 0.20 0.32 16 25 O -0.56 0.53 12.74 -148.98 -1.90 -1.37 16 26 Si 0.77 -2.66 29.78 68.60 2.04 -0.62 16 27 C -0.09 -0.37 8.67 22.33 0.19 -0.17 16 28 C -0.13 -0.38 9.66 22.23 0.21 -0.17 16 29 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.08 0.58 5.83 -2.39 -0.01 0.57 16 31 H 0.08 -0.02 8.04 -2.39 -0.02 -0.04 16 32 H 0.07 0.00 7.84 -2.39 -0.02 -0.02 16 33 H 0.08 -0.05 8.14 -2.39 -0.02 -0.07 16 34 H 0.07 0.10 8.14 -2.38 -0.02 0.08 16 35 H 0.09 -0.12 7.89 -2.39 -0.02 -0.14 16 36 H 0.42 -1.68 8.84 -92.71 -0.82 -2.50 16 37 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.06 0.59 5.88 -2.39 -0.01 0.58 16 40 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 41 H 0.10 -0.49 8.14 -2.38 -0.02 -0.51 16 42 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 43 H 0.06 0.56 5.88 -2.39 -0.01 0.55 16 44 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 45 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 46 H 0.11 -0.92 8.08 -2.39 -0.02 -0.94 16 47 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 48 H 0.15 0.55 7.63 -2.91 -0.02 0.52 16 49 H 0.10 -0.55 7.96 -2.39 -0.02 -0.57 16 50 H 0.40 -4.63 8.74 -74.06 -0.65 -5.28 16 51 H -0.28 -0.37 7.11 99.48 0.71 0.34 16 52 H -0.29 -1.18 7.11 99.48 0.71 -0.47 16 53 H 0.13 0.25 4.86 -2.91 -0.01 0.24 16 54 H 0.16 -0.36 8.06 -2.91 -0.02 -0.38 16 Total: 0.00 -21.56 434.09 1.52 -20.03 By element: Atomic # 1 Polarization: -8.25 SS G_CDS: -0.50 Total: -8.75 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 5.52 Total: 11.69 kcal Atomic # 7 Polarization: -0.37 SS G_CDS: -3.04 Total: -3.41 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -2.49 Total: -18.95 kcal Atomic # 14 Polarization: -2.66 SS G_CDS: 2.04 Total: -0.62 kcal Total: -21.56 1.52 -20.03 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13429372_15734238.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.564 kcal (2) G-P(sol) polarization free energy of solvation -21.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds