Wall clock time and date at job start Sat Mar 6 2021 04:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00303 * 2 1 4 4 C 1.52998 * 112.90784 * 72.70202 * 3 2 1 5 5 F 1.39904 * 109.47599 * 282.39578 * 4 3 2 6 6 F 1.39904 * 109.47046 * 42.39364 * 4 3 2 7 7 F 1.39899 * 109.47267 * 162.39407 * 4 3 2 8 8 C 1.53777 * 113.61259 * 301.45419 * 3 2 1 9 9 C 1.53780 * 87.17236 * 270.83768 * 8 3 2 10 10 H 1.08999 * 113.61672 * 220.06350 * 9 8 3 11 11 C 1.53003 * 113.61185 * 89.15968 * 9 8 3 12 12 O 1.45208 * 109.46753 * 175.00110 * 11 9 8 13 13 C 1.34706 * 116.99625 * 180.02562 * 12 11 9 14 14 O 1.21478 * 120.00289 * 359.97438 * 13 12 11 15 15 C 1.47723 * 120.00202 * 180.02562 * 13 12 11 16 16 C 1.39610 * 120.15522 * 174.10437 * 15 13 12 17 17 C 1.50700 * 120.07229 * 0.02647 * 16 15 13 18 18 C 1.37962 * 119.84909 * 180.02562 * 16 15 13 19 19 C 1.38344 * 120.15327 * 0.02562 * 18 16 15 20 20 C 1.38395 * 120.29884 * 359.97438 * 19 18 16 21 21 C 1.50700 * 119.92190 * 179.97438 * 20 19 18 22 22 O 1.42903 * 109.47147 * 119.99618 * 21 20 19 23 23 Si 1.86300 * 109.47134 * 359.97438 * 21 20 19 24 24 C 1.37918 * 120.15047 * 359.71350 * 20 19 18 25 25 C 1.53780 * 113.61747 * 203.95420 * 3 2 1 26 26 H 1.08991 * 109.47138 * 57.96427 * 1 2 3 27 27 H 1.09003 * 109.47097 * 177.97006 * 1 2 3 28 28 H 1.09004 * 109.46774 * 297.96618 * 1 2 3 29 29 H 1.08992 * 113.61717 * 25.43058 * 8 3 2 30 30 H 1.09007 * 113.61546 * 156.24716 * 8 3 2 31 31 H 1.08998 * 109.47078 * 294.99959 * 11 9 8 32 32 H 1.08998 * 109.47300 * 55.00002 * 11 9 8 33 33 H 1.09002 * 109.47455 * 83.40806 * 17 16 15 34 34 H 1.09003 * 109.47081 * 203.40857 * 17 16 15 35 35 H 1.08996 * 109.47351 * 323.40484 * 17 16 15 36 36 H 1.07997 * 119.92298 * 180.02562 * 18 16 15 37 37 H 1.07999 * 119.85042 * 180.02562 * 19 18 16 38 38 H 1.08999 * 109.47055 * 240.00035 * 21 20 19 39 39 H 0.96701 * 113.99687 * 179.97438 * 22 21 20 40 40 H 1.48499 * 109.99987 * 60.00533 * 23 21 20 41 41 H 1.48508 * 109.99815 * 181.31726 * 23 21 20 42 42 H 1.08004 * 120.07523 * 180.29390 * 24 20 19 43 43 H 1.09003 * 113.61826 * 203.66386 * 25 3 2 44 44 H 1.09004 * 113.61708 * 334.48418 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.8697 2.0199 1.3456 5 9 0.5672 2.5132 1.4780 6 9 2.1345 1.1184 2.3822 7 9 2.7788 3.0815 1.4071 8 6 1.5891 2.1672 -1.2020 9 6 2.7941 1.5748 -1.9517 10 1 3.3258 2.3011 -2.5665 11 6 2.4731 0.2807 -2.7022 12 8 3.6338 -0.1343 -3.4696 13 6 3.5162 -1.2643 -4.1934 14 8 2.4727 -1.8863 -4.1834 15 6 4.6564 -1.7479 -4.9985 16 6 4.5818 -2.9799 -5.6510 17 6 3.3365 -3.8208 -5.5366 18 6 5.6506 -3.4256 -6.4008 19 6 6.7948 -2.6551 -6.5065 20 6 6.8755 -1.4329 -5.8622 21 6 8.1262 -0.6008 -5.9827 22 8 7.8040 0.6609 -6.5713 23 14 9.3626 -1.4898 -7.0558 24 6 5.8119 -0.9724 -5.1147 25 6 3.4371 1.3444 -0.5721 26 1 -0.3633 0.5451 -0.8711 27 1 -0.3633 -1.0270 -0.0364 28 1 -0.3633 0.4819 0.9077 29 1 0.6270 1.8825 -1.6277 30 1 1.6713 3.2390 -1.0210 31 1 2.2128 -0.4992 -1.9866 32 1 1.6334 0.4503 -3.3762 33 1 2.6003 -3.4810 -6.2651 34 1 3.5839 -4.8646 -5.7299 35 1 2.9245 -3.7252 -4.5321 36 1 5.5940 -4.3782 -6.9064 37 1 7.6285 -3.0086 -7.0951 38 1 8.5532 -0.4414 -4.9926 39 1 8.5633 1.2498 -6.6792 40 1 8.7927 -1.7136 -8.4088 41 1 10.6125 -0.6942 -7.1566 42 1 5.8744 -0.0162 -4.6163 43 1 4.0260 2.1912 -0.2194 44 1 3.9674 0.3958 -0.4880 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13429372_17321610.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:50:02 Heat of formation + Delta-G solvation = -239.484963 kcal Electronic energy + Delta-G solvation = -33392.836687 eV Core-core repulsion = 28249.959009 eV Total energy + Delta-G solvation = -5142.877678 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.127 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.25757 -48.79286 -48.73317 -42.01803 -41.33985 -40.18469 -38.06288 -37.57479 -36.89313 -34.06502 -32.71031 -30.72523 -29.35635 -28.32100 -27.50982 -26.72740 -25.64911 -24.96755 -23.46363 -22.80392 -21.37713 -20.60098 -19.83460 -19.55624 -19.25846 -18.89043 -18.47729 -17.82279 -17.62768 -17.24221 -17.06140 -16.61168 -16.49079 -16.06598 -15.70015 -15.67646 -15.60428 -15.40780 -15.27961 -15.14221 -14.99037 -14.89642 -14.85334 -14.56661 -14.38969 -14.18727 -14.01425 -13.80464 -13.40386 -13.31532 -13.24390 -13.13190 -12.98792 -12.79722 -12.69972 -12.39790 -12.19697 -12.04840 -11.79940 -11.72136 -11.64270 -11.19558 -10.81663 -10.52869 -10.14984 -9.70900 -4.90588 -0.42582 0.20173 1.29436 1.40225 1.46791 1.51871 1.62786 1.97556 2.06483 2.54403 2.55612 2.61479 2.86287 3.22209 3.27423 3.32549 3.41077 3.55705 3.66424 3.75857 3.83201 3.90046 4.15038 4.17927 4.21010 4.24537 4.31435 4.35669 4.36822 4.44128 4.48170 4.59288 4.64005 4.64938 4.72438 4.75428 4.77345 4.80641 4.89706 4.97423 5.06414 5.19277 5.27891 5.32073 5.52235 5.68673 5.76292 6.59861 6.61962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.348 6.348 3 C 0.032 3.968 4 C 0.435 3.565 5 F -0.185 7.185 6 F -0.188 7.188 7 F -0.175 7.175 8 C -0.135 4.135 9 C -0.093 4.093 10 H 0.121 0.879 11 C 0.077 3.923 12 O -0.351 6.351 13 C 0.508 3.492 14 O -0.521 6.521 15 C -0.151 4.151 16 C -0.025 4.025 17 C -0.123 4.123 18 C -0.125 4.125 19 C -0.073 4.073 20 C -0.105 4.105 21 C -0.085 4.085 22 O -0.558 6.558 23 Si 0.765 3.235 24 C -0.036 4.036 25 C -0.112 4.112 26 H 0.070 0.930 27 H 0.109 0.891 28 H 0.049 0.951 29 H 0.104 0.896 30 H 0.129 0.871 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.165 0.835 37 H 0.155 0.845 38 H 0.098 0.902 39 H 0.396 0.604 40 H -0.295 1.295 41 H -0.287 1.287 42 H 0.140 0.860 43 H 0.130 0.870 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.501 -0.732 -1.912 4.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.266 6.266 3 C -0.010 4.010 4 C 0.380 3.620 5 F -0.166 7.166 6 F -0.169 7.169 7 F -0.156 7.156 8 C -0.173 4.173 9 C -0.112 4.112 10 H 0.139 0.861 11 C 0.003 3.997 12 O -0.268 6.268 13 C 0.355 3.645 14 O -0.412 6.412 15 C -0.152 4.152 16 C -0.025 4.025 17 C -0.179 4.179 18 C -0.143 4.143 19 C -0.091 4.091 20 C -0.105 4.105 21 C -0.193 4.193 22 O -0.368 6.368 23 Si 0.670 3.330 24 C -0.055 4.055 25 C -0.149 4.149 26 H 0.088 0.912 27 H 0.127 0.873 28 H 0.067 0.933 29 H 0.123 0.877 30 H 0.147 0.853 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.183 0.817 37 H 0.173 0.827 38 H 0.116 0.884 39 H 0.247 0.753 40 H -0.222 1.222 41 H -0.215 1.215 42 H 0.158 0.842 43 H 0.148 0.852 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.149 -1.269 -2.543 4.242 hybrid contribution -0.633 1.669 0.549 1.867 sum 2.516 0.400 -1.994 3.236 Atomic orbital electron populations 1.23268 0.78738 1.05147 1.01862 1.88082 1.22139 1.22620 1.93775 1.24192 1.01469 0.86759 0.88594 1.21458 0.73645 0.77847 0.89017 1.93181 1.38161 1.88631 1.96664 1.93187 1.93673 1.67701 1.62389 1.93170 1.67316 1.58364 1.96766 1.23662 1.00244 1.01304 0.92048 1.22084 0.97793 0.96111 0.95165 0.86063 1.23099 0.85692 0.96895 0.93971 1.86490 1.42958 1.40433 1.56882 1.21360 0.87561 0.78369 0.77237 1.90797 1.30695 1.56146 1.63532 1.19085 0.94060 0.97886 1.04140 1.20306 0.97038 0.92400 0.92775 1.21105 0.93869 0.99021 1.03880 1.21302 0.91757 1.01877 0.99348 1.21537 0.98354 0.93182 0.95979 1.19471 0.95889 0.95687 0.99467 1.25021 1.00629 0.88567 1.05116 1.86543 1.39246 1.26963 1.84079 0.94196 0.73979 0.86672 0.78132 1.21313 0.90578 0.98558 0.95010 1.23377 0.91565 1.05755 0.94214 0.91180 0.87292 0.93276 0.87731 0.85297 0.90055 0.90497 0.90883 0.89527 0.90570 0.81705 0.82746 0.88370 0.75321 1.22217 1.21450 0.84194 0.85213 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 10.48 113.37 1.19 1.18 16 2 O -0.35 -0.84 8.35 -148.98 -1.24 -2.09 16 3 C 0.03 -0.01 0.86 -10.27 -0.01 -0.02 16 4 C 0.43 1.27 2.68 71.98 0.19 1.46 16 5 F -0.18 -0.64 15.57 44.97 0.70 0.06 16 6 F -0.19 -1.35 17.08 44.97 0.77 -0.59 16 7 F -0.17 -0.40 15.83 44.97 0.71 0.31 16 8 C -0.14 0.67 6.45 31.12 0.20 0.87 16 9 C -0.09 0.33 4.22 -10.21 -0.04 0.29 16 10 H 0.12 -0.71 8.14 -2.39 -0.02 -0.73 16 11 C 0.08 0.10 5.06 71.98 0.36 0.47 16 12 O -0.35 -1.70 9.49 -56.16 -0.53 -2.23 16 13 C 0.51 3.98 7.83 70.33 0.55 4.53 16 14 O -0.52 -5.89 13.13 19.91 0.26 -5.62 16 15 C -0.15 -0.84 5.87 -20.10 -0.12 -0.96 16 16 C -0.02 -0.08 5.91 -19.60 -0.12 -0.20 16 17 C -0.12 -0.32 8.74 71.24 0.62 0.30 16 18 C -0.13 0.16 9.66 22.23 0.21 0.37 16 19 C -0.07 0.12 8.67 22.33 0.19 0.32 16 20 C -0.11 -0.09 5.42 -19.90 -0.11 -0.19 16 21 C -0.09 0.21 2.81 71.24 0.20 0.41 16 22 O -0.56 -0.23 12.74 -148.98 -1.90 -2.13 16 23 Si 0.77 -3.30 29.78 68.60 2.04 -1.26 16 24 C -0.04 -0.13 9.17 22.54 0.21 0.08 16 25 C -0.11 0.26 6.89 31.18 0.21 0.48 16 26 H 0.07 -0.33 6.29 -2.39 -0.02 -0.34 16 27 H 0.11 -0.35 8.14 -2.39 -0.02 -0.37 16 28 H 0.05 -0.03 6.73 -2.39 -0.02 -0.04 16 29 H 0.10 -0.67 6.26 -2.39 -0.01 -0.68 16 30 H 0.13 -0.98 8.10 -2.38 -0.02 -1.00 16 31 H 0.08 0.31 6.13 -2.39 -0.01 0.30 16 32 H 0.08 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.09 -0.19 8.04 -2.39 -0.02 -0.21 16 35 H 0.08 0.50 5.84 -2.39 -0.01 0.49 16 36 H 0.17 -1.16 8.06 -2.91 -0.02 -1.18 16 37 H 0.16 -1.03 4.86 -2.91 -0.01 -1.04 16 38 H 0.10 -0.63 7.96 -2.39 -0.02 -0.65 16 39 H 0.40 -2.98 8.74 -74.06 -0.65 -3.63 16 40 H -0.29 -0.76 7.11 99.48 0.71 -0.06 16 41 H -0.29 -0.08 7.11 99.48 0.71 0.62 16 42 H 0.14 0.36 7.63 -2.91 -0.02 0.34 16 43 H 0.13 -0.65 6.98 -2.39 -0.02 -0.67 16 44 H 0.09 -0.04 8.11 -2.39 -0.02 -0.06 16 Total: 0.00 -17.79 369.19 5.03 -12.76 By element: Atomic # 1 Polarization: -9.07 SS G_CDS: 0.46 Total: -8.61 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 3.76 Total: 9.39 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -3.41 Total: -12.07 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 2.18 Total: -0.22 kcal Atomic # 14 Polarization: -3.30 SS G_CDS: 2.04 Total: -1.26 kcal Total: -17.79 5.03 -12.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13429372_17321610.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -226.725 kcal (2) G-P(sol) polarization free energy of solvation -17.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds