Wall clock time and date at job start Sat Mar 6 2021 06:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37914 * 120.07575 * 2 1 4 4 C 1.38392 * 120.14979 * 180.27362 * 3 2 1 5 5 C 1.38342 * 120.30054 * 359.44228 * 4 3 2 6 6 C 1.50700 * 119.92402 * 180.27839 * 5 4 3 7 7 O 1.42900 * 109.47354 * 119.99592 * 6 5 4 8 8 Si 1.86300 * 109.47103 * 359.97438 * 6 5 4 9 9 H 1.48498 * 109.47093 * 300.00047 * 8 6 5 10 10 H 1.48507 * 109.47396 * 59.99987 * 8 6 5 11 11 H 1.48506 * 109.47400 * 180.02562 * 8 6 5 12 12 C 1.37962 * 120.15341 * 0.25494 * 5 4 3 13 13 C 1.39607 * 119.84363 * 0.02562 * 12 5 4 14 14 C 1.47728 * 120.14770 * 180.02562 * 13 12 5 15 15 O 1.21474 * 120.00344 * 173.78492 * 14 13 12 16 16 O 1.34711 * 120.00417 * 353.78806 * 14 13 12 17 17 C 1.45196 * 117.00634 * 180.02562 * 16 14 13 18 18 Si 1.86298 * 109.47384 * 74.99594 * 17 16 14 19 19 C 1.86298 * 109.47089 * 59.99939 * 18 17 16 20 20 C 1.86296 * 109.47403 * 180.02562 * 18 17 16 21 21 C 1.86303 * 109.46910 * 300.00453 * 18 17 16 22 22 H 1.09001 * 109.47361 * 263.72863 * 1 2 3 23 23 H 1.08998 * 109.47344 * 23.73345 * 1 2 3 24 24 H 1.09003 * 109.47015 * 143.73101 * 1 2 3 25 25 H 1.08007 * 119.92746 * 0.02562 * 3 2 1 26 26 H 1.08002 * 119.84381 * 179.71930 * 4 3 2 27 27 H 1.09001 * 109.47190 * 240.00393 * 6 5 4 28 28 H 0.96700 * 113.99938 * 179.97438 * 7 6 5 29 29 H 1.07999 * 120.08159 * 180.02562 * 12 5 4 30 30 H 1.09002 * 109.47174 * 194.99882 * 17 16 14 31 31 H 1.09003 * 109.46676 * 314.99694 * 17 16 14 32 32 H 1.09002 * 109.46828 * 60.00105 * 19 18 17 33 33 H 1.09001 * 109.47416 * 179.97438 * 19 18 17 34 34 H 1.09001 * 109.47606 * 300.00294 * 19 18 17 35 35 H 1.08996 * 109.47020 * 59.99536 * 20 18 17 36 36 H 1.08993 * 109.47639 * 180.02562 * 20 18 17 37 37 H 1.09002 * 109.46879 * 300.00119 * 20 18 17 38 38 H 1.09000 * 109.47667 * 59.99931 * 21 18 17 39 39 H 1.09004 * 109.47023 * 180.02562 * 21 18 17 40 40 H 1.09005 * 109.46917 * 299.99422 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1935 0.0000 4 6 3.5821 1.1953 -0.0057 5 6 4.2817 0.0018 0.0002 6 6 5.7886 0.0137 0.0002 7 8 6.2702 -0.6504 1.1703 8 14 6.3957 1.7749 -0.0091 9 1 5.8953 2.4646 -1.2253 10 1 5.8951 2.4776 1.1996 11 1 7.8808 1.7867 -0.0097 12 6 3.6030 -1.1993 0.0065 13 6 2.2069 -1.2084 0.0064 14 6 1.4733 -2.4907 0.0137 15 8 0.2639 -2.4979 0.1275 16 8 2.1454 -3.6520 -0.1058 17 6 1.3598 -4.8730 -0.0912 18 14 0.4853 -5.0683 -1.7245 19 6 1.7431 -5.1556 -3.0959 20 6 -0.5234 -6.6345 -1.7055 21 6 -0.6391 -3.6096 -2.0052 22 1 -0.3634 -0.1123 1.0215 23 1 -0.3634 0.9407 -0.4136 24 1 -0.3633 -0.8286 -0.6080 25 1 1.6582 2.1289 0.0004 26 1 4.1184 2.1327 -0.0103 27 1 6.1561 -0.5016 -0.8873 28 1 7.2345 -0.6809 1.2364 29 1 4.1502 -2.1304 0.0115 30 1 2.0177 -5.7264 0.0730 31 1 0.6238 -4.8218 0.7112 32 1 2.4010 -6.0090 -2.9317 33 1 1.2315 -5.2704 -4.0516 34 1 2.3330 -4.2390 -3.1070 35 1 -1.2593 -6.5830 -0.9032 36 1 -1.0347 -6.7491 -2.6612 37 1 0.1342 -7.4881 -1.5411 38 1 -0.0494 -2.6930 -2.0162 39 1 -1.1512 -3.7241 -2.9606 40 1 -1.3752 -3.5585 -1.2028 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_13429372_4858416.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:43:23 Heat of formation + Delta-G solvation = -124.469064 kcal Electronic energy + Delta-G solvation = -20639.165788 eV Core-core repulsion = 17542.951968 eV Total energy + Delta-G solvation = -3096.213820 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.125 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.70541 -40.17825 -37.86308 -37.18845 -33.99971 -32.61429 -29.74400 -29.33739 -28.47620 -28.34257 -27.97894 -25.49879 -24.83802 -22.69726 -21.20081 -18.81138 -18.40906 -17.79565 -17.35634 -17.19612 -16.57744 -15.85134 -15.52399 -14.93512 -14.82615 -14.53834 -14.45653 -14.24502 -13.99441 -13.96640 -13.77729 -13.42795 -13.35378 -13.25185 -13.21299 -13.03150 -12.94055 -12.82345 -12.66737 -12.43418 -12.24940 -12.00173 -11.79238 -11.01697 -10.88285 -10.73902 -10.44717 -10.36271 -10.06013 -9.64525 -0.31789 0.24651 1.06702 1.36526 1.42372 1.44270 1.55768 1.65063 1.83713 1.85736 2.06906 2.54080 2.64043 3.29173 3.61207 3.75034 3.86010 3.89692 4.18923 4.23627 4.28391 4.36263 4.63289 4.66011 4.67454 4.69686 4.74826 4.76357 4.78930 4.86256 4.89423 4.92032 4.96119 5.12504 5.27203 5.30985 5.36866 5.43368 5.51928 5.63791 5.73843 5.81199 6.51810 6.88107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.013 4.013 3 C -0.127 4.127 4 C -0.084 4.084 5 C -0.097 4.097 6 C -0.081 4.081 7 O -0.544 6.544 8 Si 0.944 3.056 9 H -0.249 1.249 10 H -0.246 1.246 11 H -0.255 1.255 12 C -0.028 4.028 13 C -0.131 4.131 14 C 0.494 3.506 15 O -0.485 6.485 16 O -0.332 6.332 17 C -0.238 4.238 18 Si 0.998 3.002 19 C -0.446 4.446 20 C -0.446 4.446 21 C -0.436 4.436 22 H 0.080 0.920 23 H 0.064 0.936 24 H 0.097 0.903 25 H 0.138 0.862 26 H 0.126 0.874 27 H 0.079 0.921 28 H 0.382 0.618 29 H 0.143 0.857 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.246 0.321 -1.738 2.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.013 4.013 3 C -0.145 4.145 4 C -0.101 4.101 5 C -0.097 4.097 6 C -0.191 4.191 7 O -0.350 6.350 8 Si 0.767 3.233 9 H -0.172 1.172 10 H -0.170 1.170 11 H -0.179 1.179 12 C -0.047 4.047 13 C -0.132 4.132 14 C 0.340 3.660 15 O -0.375 6.375 16 O -0.248 6.248 17 C -0.356 4.356 18 Si 1.194 2.806 19 C -0.554 4.554 20 C -0.554 4.554 21 C -0.545 4.545 22 H 0.098 0.902 23 H 0.082 0.918 24 H 0.116 0.884 25 H 0.156 0.844 26 H 0.144 0.856 27 H 0.097 0.903 28 H 0.229 0.771 29 H 0.160 0.840 30 H 0.127 0.873 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.560 1.067 -1.553 2.446 hybrid contribution 0.484 -0.489 0.096 0.695 sum 2.044 0.577 -1.457 2.575 Atomic orbital electron populations 1.21202 0.89523 1.03714 1.04015 1.20105 0.97115 0.91132 0.92939 1.20965 0.93521 0.97815 1.02231 1.21259 0.94907 0.97319 0.96649 1.19204 0.93826 0.93240 1.03480 1.24707 0.93870 1.09428 0.91095 1.86508 1.26750 1.79964 1.41788 0.85775 0.80248 0.75488 0.81835 1.17240 1.16963 1.17861 1.21280 0.92284 0.98692 0.92414 1.18984 0.93446 0.90182 1.10561 1.21129 0.86165 0.84670 0.74086 1.90794 1.14497 1.87307 1.44866 1.86474 1.40801 1.14342 1.83206 1.28355 1.03025 0.85119 1.19144 0.79709 0.67146 0.68511 0.65230 1.26066 1.11682 1.04723 1.12950 1.26041 1.09208 1.15248 1.04952 1.26258 1.10488 1.13336 1.04373 0.90165 0.91754 0.88418 0.84432 0.85597 0.90268 0.77081 0.83960 0.87257 0.90071 0.91085 0.91003 0.91064 0.90956 0.90673 0.91067 0.91504 0.91899 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.15 8.73 36.01 0.31 0.17 16 2 C -0.01 -0.02 5.91 -104.21 -0.62 -0.64 16 3 C -0.13 -0.08 9.66 -39.64 -0.38 -0.46 16 4 C -0.08 -0.06 8.67 -39.49 -0.34 -0.40 16 5 C -0.10 -0.12 5.42 -104.68 -0.57 -0.69 16 6 C -0.08 0.06 2.81 36.01 0.10 0.16 16 7 O -0.54 0.08 12.74 -35.23 -0.45 -0.37 16 8 Si 0.94 -1.08 25.06 -169.99 -4.26 -5.34 16 9 H -0.25 0.19 7.11 56.52 0.40 0.59 16 10 H -0.25 -0.07 7.11 56.52 0.40 0.33 16 11 H -0.25 0.25 7.11 56.52 0.40 0.65 16 12 C -0.03 -0.06 9.17 -39.17 -0.36 -0.42 16 13 C -0.13 -0.35 5.87 -104.98 -0.62 -0.96 16 14 C 0.49 1.53 6.60 34.61 0.23 1.76 16 15 O -0.48 -1.82 9.06 -19.25 -0.17 -2.00 16 16 O -0.33 -0.75 9.19 -40.52 -0.37 -1.12 16 17 C -0.24 -0.04 5.40 101.05 0.55 0.50 16 18 Si 1.00 -1.15 12.12 -169.99 -2.06 -3.21 16 19 C -0.45 0.25 8.65 101.05 0.87 1.13 16 20 C -0.45 0.51 8.65 101.05 0.87 1.39 16 21 C -0.44 -0.41 7.10 101.05 0.72 0.31 16 22 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 23 H 0.06 -0.03 8.04 -51.93 -0.42 -0.45 16 24 H 0.10 0.22 5.71 -51.93 -0.30 -0.08 16 25 H 0.14 -0.23 8.06 -52.48 -0.42 -0.65 16 26 H 0.13 -0.12 4.86 -52.49 -0.26 -0.37 16 27 H 0.08 -0.20 7.96 -51.93 -0.41 -0.62 16 28 H 0.38 -1.74 8.74 45.56 0.40 -1.34 16 29 H 0.14 0.19 7.63 -52.49 -0.40 -0.22 16 30 H 0.11 -0.18 7.96 -51.93 -0.41 -0.59 16 31 H 0.08 0.04 7.52 -51.93 -0.39 -0.35 16 32 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 33 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 34 H 0.07 0.01 7.96 -51.93 -0.41 -0.41 16 35 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 36 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 37 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 38 H 0.07 0.13 6.13 -51.93 -0.32 -0.18 16 39 H 0.06 0.02 7.96 -51.93 -0.41 -0.39 16 40 H 0.08 0.14 7.42 -51.93 -0.39 -0.24 16 LS Contribution 326.07 15.07 4.91 4.91 Total: 0.00 -5.31 326.07 -7.06 -12.37 By element: Atomic # 1 Polarization: -1.66 SS G_CDS: -5.43 Total: -7.09 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 0.77 Total: 1.84 kcal Atomic # 8 Polarization: -2.50 SS G_CDS: -1.00 Total: -3.49 kcal Atomic # 14 Polarization: -2.22 SS G_CDS: -6.32 Total: -8.54 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -5.31 -7.06 -12.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13429372_4858416.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.097 kcal (2) G-P(sol) polarization free energy of solvation -5.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds