Wall clock time and date at job start Sat Mar 6 2021 06:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37914 * 120.07575 * 2 1 4 4 C 1.38392 * 120.14979 * 180.27362 * 3 2 1 5 5 C 1.38342 * 120.30054 * 359.44228 * 4 3 2 6 6 C 1.50700 * 119.92402 * 180.27839 * 5 4 3 7 7 O 1.42900 * 109.47354 * 119.99592 * 6 5 4 8 8 Si 1.86300 * 109.47103 * 359.97438 * 6 5 4 9 9 H 1.48498 * 109.47093 * 300.00047 * 8 6 5 10 10 H 1.48507 * 109.47396 * 59.99987 * 8 6 5 11 11 H 1.48506 * 109.47400 * 180.02562 * 8 6 5 12 12 C 1.37962 * 120.15341 * 0.25494 * 5 4 3 13 13 C 1.39607 * 119.84363 * 0.02562 * 12 5 4 14 14 C 1.47728 * 120.14770 * 180.02562 * 13 12 5 15 15 O 1.21474 * 120.00344 * 173.78492 * 14 13 12 16 16 O 1.34711 * 120.00417 * 353.78806 * 14 13 12 17 17 C 1.45196 * 117.00634 * 180.02562 * 16 14 13 18 18 Si 1.86298 * 109.47384 * 74.99594 * 17 16 14 19 19 C 1.86298 * 109.47089 * 59.99939 * 18 17 16 20 20 C 1.86296 * 109.47403 * 180.02562 * 18 17 16 21 21 C 1.86303 * 109.46910 * 300.00453 * 18 17 16 22 22 H 1.09001 * 109.47361 * 263.72863 * 1 2 3 23 23 H 1.08998 * 109.47344 * 23.73345 * 1 2 3 24 24 H 1.09003 * 109.47015 * 143.73101 * 1 2 3 25 25 H 1.08007 * 119.92746 * 0.02562 * 3 2 1 26 26 H 1.08002 * 119.84381 * 179.71930 * 4 3 2 27 27 H 1.09001 * 109.47190 * 240.00393 * 6 5 4 28 28 H 0.96700 * 113.99938 * 179.97438 * 7 6 5 29 29 H 1.07999 * 120.08159 * 180.02562 * 12 5 4 30 30 H 1.09002 * 109.47174 * 194.99882 * 17 16 14 31 31 H 1.09003 * 109.46676 * 314.99694 * 17 16 14 32 32 H 1.09002 * 109.46828 * 60.00105 * 19 18 17 33 33 H 1.09001 * 109.47416 * 179.97438 * 19 18 17 34 34 H 1.09001 * 109.47606 * 300.00294 * 19 18 17 35 35 H 1.08996 * 109.47020 * 59.99536 * 20 18 17 36 36 H 1.08993 * 109.47639 * 180.02562 * 20 18 17 37 37 H 1.09002 * 109.46879 * 300.00119 * 20 18 17 38 38 H 1.09000 * 109.47667 * 59.99931 * 21 18 17 39 39 H 1.09004 * 109.47023 * 180.02562 * 21 18 17 40 40 H 1.09005 * 109.46917 * 299.99422 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1935 0.0000 4 6 3.5821 1.1953 -0.0057 5 6 4.2817 0.0018 0.0002 6 6 5.7886 0.0137 0.0002 7 8 6.2702 -0.6504 1.1703 8 14 6.3957 1.7749 -0.0091 9 1 5.8953 2.4646 -1.2253 10 1 5.8951 2.4776 1.1996 11 1 7.8808 1.7867 -0.0097 12 6 3.6030 -1.1993 0.0065 13 6 2.2069 -1.2084 0.0064 14 6 1.4733 -2.4907 0.0137 15 8 0.2639 -2.4979 0.1275 16 8 2.1454 -3.6520 -0.1058 17 6 1.3598 -4.8730 -0.0912 18 14 0.4853 -5.0683 -1.7245 19 6 1.7431 -5.1556 -3.0959 20 6 -0.5234 -6.6345 -1.7055 21 6 -0.6391 -3.6096 -2.0052 22 1 -0.3634 -0.1123 1.0215 23 1 -0.3634 0.9407 -0.4136 24 1 -0.3633 -0.8286 -0.6080 25 1 1.6582 2.1289 0.0004 26 1 4.1184 2.1327 -0.0103 27 1 6.1561 -0.5016 -0.8873 28 1 7.2345 -0.6809 1.2364 29 1 4.1502 -2.1304 0.0115 30 1 2.0177 -5.7264 0.0730 31 1 0.6238 -4.8218 0.7112 32 1 2.4010 -6.0090 -2.9317 33 1 1.2315 -5.2704 -4.0516 34 1 2.3330 -4.2390 -3.1070 35 1 -1.2593 -6.5830 -0.9032 36 1 -1.0347 -6.7491 -2.6612 37 1 0.1342 -7.4881 -1.5411 38 1 -0.0494 -2.6930 -2.0162 39 1 -1.1512 -3.7241 -2.9606 40 1 -1.3752 -3.5585 -1.2028 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13429372_4858416.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:43:22 Heat of formation + Delta-G solvation = -116.484163 kcal Electronic energy + Delta-G solvation = -20638.819536 eV Core-core repulsion = 17542.951968 eV Total energy + Delta-G solvation = -3095.867569 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.125 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.84181 -40.25149 -37.86436 -37.29856 -34.05562 -32.69357 -29.73132 -29.35511 -28.42271 -28.36860 -27.99846 -25.53659 -24.88986 -22.78239 -21.30205 -18.88909 -18.37598 -17.89951 -17.49581 -17.23499 -16.60631 -15.86362 -15.53106 -14.99731 -14.82711 -14.56127 -14.44970 -14.25362 -13.99489 -13.94358 -13.78811 -13.45603 -13.34541 -13.28763 -13.21946 -13.04622 -12.99726 -12.86817 -12.68936 -12.51720 -12.25136 -11.94000 -11.75802 -11.13484 -10.85205 -10.76374 -10.42525 -10.35827 -10.13912 -9.70047 -0.43004 0.17826 1.15973 1.37041 1.47056 1.52589 1.53858 1.61033 1.88997 1.91706 2.08423 2.54303 2.57616 3.37677 3.56950 3.75410 3.81233 3.86968 4.18641 4.23996 4.31614 4.35458 4.62609 4.68499 4.71630 4.73965 4.77367 4.77999 4.80812 4.81398 4.82718 4.86954 4.88159 5.04356 5.17056 5.24026 5.29176 5.51603 5.52820 5.59793 5.64405 5.74524 6.70857 6.82155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.026 4.026 3 C -0.127 4.127 4 C -0.090 4.090 5 C -0.106 4.106 6 C -0.084 4.084 7 O -0.564 6.564 8 Si 0.978 3.022 9 H -0.252 1.252 10 H -0.268 1.268 11 H -0.255 1.255 12 C -0.038 4.038 13 C -0.148 4.148 14 C 0.490 3.510 15 O -0.499 6.499 16 O -0.338 6.338 17 C -0.258 4.258 18 Si 1.056 2.944 19 C -0.455 4.455 20 C -0.450 4.450 21 C -0.453 4.453 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.161 0.839 26 H 0.142 0.858 27 H 0.099 0.901 28 H 0.399 0.601 29 H 0.144 0.856 30 H 0.129 0.871 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.052 0.948 39 H 0.066 0.934 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.012 0.248 -2.148 3.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.027 4.027 3 C -0.145 4.145 4 C -0.107 4.107 5 C -0.106 4.106 6 C -0.194 4.194 7 O -0.373 6.373 8 Si 0.801 3.199 9 H -0.176 1.176 10 H -0.193 1.193 11 H -0.179 1.179 12 C -0.056 4.056 13 C -0.149 4.149 14 C 0.336 3.664 15 O -0.390 6.390 16 O -0.254 6.254 17 C -0.375 4.375 18 Si 1.248 2.752 19 C -0.562 4.562 20 C -0.559 4.559 21 C -0.559 4.559 22 H 0.092 0.908 23 H 0.100 0.900 24 H 0.102 0.898 25 H 0.178 0.822 26 H 0.159 0.841 27 H 0.116 0.884 28 H 0.250 0.750 29 H 0.161 0.839 30 H 0.147 0.853 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.344 1.003 -1.963 3.218 hybrid contribution 0.260 -0.455 0.244 0.578 sum 2.604 0.548 -1.719 3.168 Atomic orbital electron populations 1.21144 0.89365 1.04069 1.03471 1.20279 0.97428 0.91458 0.93504 1.21257 0.93747 0.98249 1.01203 1.21526 0.95146 0.97861 0.96193 1.19531 0.95148 0.93111 1.02853 1.24815 0.92615 1.10221 0.91702 1.86461 1.28628 1.80108 1.42091 0.85297 0.79793 0.74384 0.80385 1.17591 1.19271 1.17868 1.21356 0.92084 0.99231 0.92945 1.19158 0.93978 0.90329 1.11454 1.21321 0.86118 0.85124 0.73859 1.90784 1.14984 1.87556 1.45647 1.86460 1.41208 1.14703 1.83006 1.28745 1.03622 0.84900 1.20185 0.78838 0.65666 0.66948 0.63713 1.26156 1.11980 1.04686 1.13397 1.26066 1.09340 1.15365 1.05103 1.26507 1.10901 1.14400 1.04108 0.90754 0.89986 0.89825 0.82150 0.84074 0.88369 0.75009 0.83860 0.85265 0.90686 0.90234 0.90647 0.91877 0.91083 0.90381 0.90080 0.92916 0.91514 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.45 8.73 71.24 0.62 0.17 16 2 C -0.03 -0.13 5.91 -19.60 -0.12 -0.24 16 3 C -0.13 -0.17 9.66 22.23 0.21 0.05 16 4 C -0.09 -0.12 8.67 22.33 0.19 0.07 16 5 C -0.11 -0.29 5.42 -19.91 -0.11 -0.40 16 6 C -0.08 0.16 2.81 71.24 0.20 0.36 16 7 O -0.56 0.30 12.74 -148.98 -1.90 -1.60 16 8 Si 0.98 -2.83 25.06 68.60 1.72 -1.12 16 9 H -0.25 0.62 7.11 99.48 0.71 1.33 16 10 H -0.27 -0.16 7.11 99.48 0.71 0.55 16 11 H -0.25 0.75 7.11 99.48 0.71 1.46 16 12 C -0.04 -0.19 9.17 22.53 0.21 0.02 16 13 C -0.15 -1.02 5.87 -20.10 -0.12 -1.14 16 14 C 0.49 3.94 6.60 70.33 0.46 4.41 16 15 O -0.50 -4.85 9.06 19.92 0.18 -4.67 16 16 O -0.34 -1.96 9.19 -56.21 -0.52 -2.48 16 17 C -0.26 -0.26 5.40 113.37 0.61 0.36 16 18 Si 1.06 -2.02 12.12 68.60 0.83 -1.19 16 19 C -0.45 0.56 8.65 113.37 0.98 1.54 16 20 C -0.45 1.27 8.65 113.37 0.98 2.25 16 21 C -0.45 -1.59 7.10 113.37 0.80 -0.78 16 22 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 23 H 0.08 -0.05 8.04 -2.39 -0.02 -0.07 16 24 H 0.08 0.55 5.71 -2.39 -0.01 0.54 16 25 H 0.16 -0.66 8.06 -2.91 -0.02 -0.68 16 26 H 0.14 -0.34 4.86 -2.91 -0.01 -0.35 16 27 H 0.10 -0.59 7.96 -2.39 -0.02 -0.60 16 28 H 0.40 -3.86 8.74 -74.06 -0.65 -4.50 16 29 H 0.14 0.55 7.63 -2.91 -0.02 0.53 16 30 H 0.13 -0.46 7.96 -2.39 -0.02 -0.48 16 31 H 0.07 0.17 7.52 -2.39 -0.02 0.15 16 32 H 0.08 -0.22 7.96 -2.39 -0.02 -0.24 16 33 H 0.07 -0.14 7.96 -2.39 -0.02 -0.15 16 34 H 0.06 0.04 7.96 -2.39 -0.02 0.02 16 35 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 36 H 0.08 -0.23 7.96 -2.39 -0.02 -0.25 16 37 H 0.08 -0.36 7.96 -2.39 -0.02 -0.38 16 38 H 0.05 0.33 6.13 -2.39 -0.01 0.32 16 39 H 0.07 0.13 7.96 -2.38 -0.02 0.11 16 40 H 0.06 0.38 7.42 -2.38 -0.02 0.36 16 Total: 0.00 -13.01 326.07 6.40 -6.61 By element: Atomic # 1 Polarization: -3.35 SS G_CDS: 1.14 Total: -2.21 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 4.94 Total: 6.66 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -2.23 Total: -8.75 kcal Atomic # 14 Polarization: -4.86 SS G_CDS: 2.55 Total: -2.31 kcal Total: -13.01 6.40 -6.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13429372_4858416.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.872 kcal (2) G-P(sol) polarization free energy of solvation -13.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds