Wall clock time and date at job start Sat Mar 6 2021 03:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47509 * 2 1 4 4 C 1.50701 * 109.46878 * 119.99874 * 2 1 3 5 5 C 1.32670 * 124.67003 * 64.72604 * 4 2 1 6 6 C 1.44550 * 113.10015 * 179.81855 * 5 4 2 7 7 C 1.46883 * 123.50553 * 180.23816 * 6 5 4 8 8 O 1.21575 * 119.99958 * 180.27229 * 7 6 5 9 9 O 1.34822 * 119.99903 * 0.26619 * 7 6 5 10 10 C 1.45198 * 116.99820 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47082 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47112 * 179.97438 * 11 10 9 13 13 O 1.42971 * 109.46971 * 300.00432 * 11 10 9 14 14 C 1.43092 * 113.76724 * 178.79583 * 13 11 10 15 15 C 1.53267 * 108.94006 * 302.02451 * 14 13 11 16 16 H 1.08995 * 109.57440 * 294.59014 * 15 14 13 17 17 N 1.46497 * 109.57243 * 174.33300 * 15 14 13 18 18 C 1.34527 * 124.46453 * 299.70297 * 17 15 14 19 19 O 1.21446 * 125.70573 * 0.02991 * 18 17 15 20 20 C 1.47816 * 108.58175 * 179.90500 * 18 17 15 21 21 C 1.40941 * 105.87918 * 0.34552 * 20 18 17 22 22 C 1.38570 * 119.81881 * 179.79494 * 21 20 18 23 23 C 1.38611 * 119.72090 * 0.02562 * 22 21 20 24 24 C 1.38223 * 120.45729 * 359.97438 * 23 22 21 25 25 C 1.38569 * 134.29559 * 180.09395 * 20 18 17 26 26 C 1.34530 * 124.46005 * 120.00040 * 17 15 14 27 27 O 1.21442 * 125.70661 * 359.96733 * 26 17 15 28 28 C 1.53264 * 108.84488 * 54.52908 * 15 14 13 29 29 O 1.42974 * 109.46847 * 60.00157 * 11 10 9 30 30 C 1.36320 * 112.98622 * 0.45607 * 6 5 4 31 31 Cl 1.73602 * 124.60971 * 179.75441 * 30 6 5 32 32 S 1.70439 * 110.77967 * 359.75699 * 30 6 5 33 33 H 0.96695 * 113.99582 * 299.99951 * 1 2 3 34 34 H 1.09001 * 109.47395 * 239.99652 * 2 1 3 35 35 H 1.48495 * 109.99824 * 300.00080 * 3 2 1 36 36 H 1.48498 * 109.99663 * 61.31719 * 3 2 1 37 37 H 1.07994 * 123.44620 * 359.97438 * 5 4 2 38 38 H 1.09000 * 109.47109 * 300.00271 * 10 9 7 39 39 H 1.09001 * 109.47053 * 60.00349 * 10 9 7 40 40 H 1.09003 * 109.56189 * 61.86337 * 14 13 11 41 41 H 1.08995 * 109.55928 * 182.18926 * 14 13 11 42 42 H 1.08000 * 120.13935 * 180.02562 * 22 21 20 43 43 H 1.07993 * 119.77204 * 180.02562 * 23 22 21 44 44 H 1.08005 * 119.77288 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.13953 * 0.25592 * 25 20 18 46 46 H 1.09000 * 109.56013 * 65.31238 * 28 15 14 47 47 H 1.08996 * 109.55537 * 185.63536 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7436 -1.9983 1.4879 6 6 2.3359 -2.4191 2.7375 7 6 2.2700 -3.7967 3.2427 8 8 2.7871 -4.0796 4.3060 9 8 1.6360 -4.7475 2.5273 10 6 1.6098 -6.0866 3.0880 11 6 0.8531 -7.0210 2.1417 12 1 0.8338 -8.0263 2.5624 13 8 -0.4857 -6.5479 1.9747 14 6 -1.2710 -7.3430 1.0811 15 6 -0.5785 -7.3863 -0.2856 16 1 -0.5711 -6.3880 -0.7230 17 7 -1.2979 -8.3050 -1.1713 18 6 -1.4769 -9.6155 -0.9258 19 8 -1.0744 -10.2152 0.0506 20 6 -2.2481 -10.2028 -2.0417 21 6 -2.4898 -9.1456 -2.9419 22 6 -3.1977 -9.3827 -4.1093 23 6 -3.6639 -10.6591 -4.3830 24 6 -3.4268 -11.6959 -3.5002 25 6 -2.7197 -11.4738 -2.3288 26 6 -1.8616 -7.9504 -2.3403 27 8 -1.8553 -6.8351 -2.8207 28 6 0.8608 -7.8775 -0.0959 29 8 1.5107 -7.0485 0.8725 30 6 2.9578 -1.4033 3.4006 31 17 3.7619 -1.5707 4.9300 32 16 2.8387 0.0534 2.5239 33 1 -0.3932 0.4417 0.7650 34 1 1.7924 -0.5139 -0.8899 35 1 1.5617 2.4678 -1.2085 36 1 1.5880 2.4585 1.2242 37 1 1.2057 -2.6645 0.8298 38 1 2.6305 -6.4474 3.2149 39 1 1.1089 -6.0655 4.0558 40 1 -1.3616 -8.3547 1.4765 41 1 -2.2617 -6.9012 0.9743 42 1 -3.3855 -8.5765 -4.8029 43 1 -4.2153 -10.8449 -5.2927 44 1 -3.7955 -12.6860 -3.7243 45 1 -2.5371 -12.2877 -1.6429 46 1 0.8510 -8.9095 0.2550 47 1 1.3946 -7.8180 -1.0443 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13431042_13594054.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:47:25 Heat of formation + Delta-G solvation = -156.807898 kcal Electronic energy + Delta-G solvation = -41680.994562 eV Core-core repulsion = 35915.898560 eV Total energy + Delta-G solvation = -5765.096002 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 466.050 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -43.72159 -41.77410 -41.12564 -39.96532 -39.51169 -39.26510 -38.26336 -37.62097 -37.19937 -37.12149 -37.11935 -34.56100 -32.17209 -32.02703 -31.64646 -29.99195 -27.51867 -27.12278 -26.55204 -26.36144 -25.32703 -23.86116 -23.49801 -22.54290 -22.21772 -21.20919 -20.98033 -19.62592 -19.18409 -18.99780 -18.89342 -18.43169 -18.04447 -17.78839 -17.73129 -17.57026 -17.32378 -16.99425 -16.77460 -16.47829 -16.38815 -16.19055 -15.91456 -15.86226 -15.49844 -15.34384 -15.31917 -15.07519 -15.00600 -14.80294 -14.73450 -14.62517 -14.40539 -14.13106 -13.98888 -13.81098 -13.46543 -13.29118 -13.04786 -12.83945 -12.70358 -12.70203 -12.54233 -12.49162 -12.35057 -12.26373 -11.88031 -11.87406 -11.71685 -11.66391 -11.45563 -10.98891 -10.87787 -10.79570 -10.26801 -10.25607 -10.03509 -9.80228 -5.05542 -1.12399 -0.84695 -0.32244 -0.07050 0.32379 0.49848 0.85926 0.87382 0.87687 1.13720 1.48217 1.55818 1.60375 1.76338 1.89100 2.15986 2.22049 2.43356 2.56299 3.05790 3.13118 3.17982 3.20663 3.40439 3.44174 3.52703 3.60021 3.67420 3.72685 3.84337 3.92264 4.03176 4.03207 4.06218 4.13308 4.13902 4.19242 4.23230 4.34579 4.40383 4.44253 4.49512 4.54249 4.76770 4.79570 4.86836 4.90203 5.09661 5.17450 5.24270 5.32926 5.40417 5.64460 5.69217 5.90977 6.33299 6.40735 6.51659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.538 6.538 2 C -0.039 4.039 3 Si 0.716 3.284 4 C -0.233 4.233 5 C -0.054 4.054 6 C -0.159 4.159 7 C 0.524 3.476 8 O -0.515 6.515 9 O -0.337 6.337 10 C 0.082 3.918 11 C 0.242 3.758 12 H 0.109 0.891 13 O -0.384 6.384 14 C 0.051 3.949 15 C 0.077 3.923 16 H 0.119 0.881 17 N -0.569 5.569 18 C 0.576 3.424 19 O -0.480 6.480 20 C -0.159 4.159 21 C -0.159 4.159 22 C -0.045 4.045 23 C -0.084 4.084 24 C -0.084 4.084 25 C -0.042 4.042 26 C 0.576 3.424 27 O -0.488 6.488 28 C 0.051 3.949 29 O -0.383 6.383 30 C -0.129 4.129 31 Cl 0.016 6.984 32 S 0.306 5.694 33 H 0.390 0.610 34 H 0.143 0.857 35 H -0.267 1.267 36 H -0.249 1.249 37 H 0.164 0.836 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.075 0.925 41 H 0.114 0.886 42 H 0.153 0.847 43 H 0.176 0.824 44 H 0.177 0.823 45 H 0.156 0.844 46 H 0.076 0.924 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.775 -3.711 -6.458 7.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.150 4.150 3 Si 0.616 3.384 4 C -0.350 4.350 5 C -0.082 4.082 6 C -0.177 4.177 7 C 0.368 3.632 8 O -0.405 6.405 9 O -0.253 6.253 10 C 0.008 3.992 11 C 0.147 3.853 12 H 0.126 0.874 13 O -0.303 6.303 14 C -0.026 4.026 15 C -0.026 4.026 16 H 0.137 0.863 17 N -0.314 5.314 18 C 0.368 3.632 19 O -0.353 6.353 20 C -0.163 4.163 21 C -0.163 4.163 22 C -0.063 4.063 23 C -0.101 4.101 24 C -0.102 4.102 25 C -0.061 4.061 26 C 0.367 3.633 27 O -0.361 6.361 28 C -0.026 4.026 29 O -0.302 6.302 30 C -0.275 4.275 31 Cl 0.045 6.955 32 S 0.571 5.429 33 H 0.240 0.760 34 H 0.161 0.839 35 H -0.192 1.192 36 H -0.174 1.174 37 H 0.182 0.818 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.094 0.906 41 H 0.132 0.868 42 H 0.171 0.829 43 H 0.193 0.807 44 H 0.194 0.806 45 H 0.174 0.826 46 H 0.094 0.906 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.786 -1.216 -5.871 6.256 hybrid contribution -1.381 -1.993 0.808 2.556 sum -3.167 -3.209 -5.064 6.780 Atomic orbital electron populations 1.86640 1.17603 1.80289 1.50118 1.24695 0.83577 1.10907 0.95810 0.94488 0.90458 0.72732 0.80692 1.24939 1.08622 0.98274 1.03156 1.21064 0.97881 0.95381 0.93868 1.19402 1.08601 0.91015 0.98705 1.20447 0.75131 0.85652 0.81972 1.90912 1.44428 1.82493 1.22700 1.86662 1.69553 1.19398 1.49701 1.23306 1.02237 0.77688 0.95951 1.23855 0.79308 0.97318 0.84790 0.87363 1.88235 1.23478 1.54734 1.63900 1.23026 0.95402 0.97351 0.86800 1.22576 0.93393 0.94873 0.91719 0.86335 1.46469 1.51935 1.11014 1.21962 1.18733 0.77943 0.80765 0.85806 1.90794 1.48776 1.65347 1.30402 1.20451 1.03703 0.96600 0.95526 1.20432 1.04466 0.92550 0.98833 1.21163 0.92535 0.99182 0.93450 1.21953 0.96724 0.90757 1.00704 1.21968 0.94776 1.01710 0.91712 1.21167 0.93325 0.94090 0.97517 1.18784 0.76519 0.88361 0.79633 1.90827 1.56386 1.24245 1.64602 1.23034 0.90585 0.94621 0.94343 1.88233 1.50266 1.69126 1.22613 1.25903 1.03511 1.02089 0.96045 1.98437 1.75988 1.97501 1.23619 1.83194 1.48568 1.03116 1.08006 0.76043 0.83945 1.19204 1.17382 0.81826 0.87460 0.87604 0.90637 0.86821 0.82914 0.80674 0.80609 0.82624 0.90586 0.86671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.33 12.88 -148.98 -1.92 -2.25 16 2 C -0.04 0.10 2.94 71.24 0.21 0.31 16 3 Si 0.72 -3.08 30.92 68.60 2.12 -0.96 16 4 C -0.23 0.17 5.65 24.52 0.14 0.31 16 5 C -0.05 -0.17 9.98 22.71 0.23 0.05 16 6 C -0.16 -1.11 5.98 -19.85 -0.12 -1.23 16 7 C 0.52 5.45 7.92 70.08 0.56 6.00 16 8 O -0.51 -7.12 14.71 19.59 0.29 -6.84 16 9 O -0.34 -3.06 9.75 -51.04 -0.50 -3.56 16 10 C 0.08 0.38 5.56 71.98 0.40 0.78 16 11 C 0.24 0.97 3.59 71.98 0.26 1.23 16 12 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 13 O -0.38 -2.47 10.44 -122.14 -1.27 -3.74 16 14 C 0.05 0.19 6.33 72.07 0.46 0.64 16 15 C 0.08 0.31 3.08 45.17 0.14 0.45 16 16 H 0.12 0.74 7.59 -2.39 -0.02 0.72 16 17 N -0.57 -2.17 2.53 -739.55 -1.87 -4.05 16 18 C 0.58 2.01 7.35 86.82 0.64 2.65 16 19 O -0.48 -3.21 15.16 -3.55 -0.05 -3.26 16 20 C -0.16 0.04 6.40 -20.00 -0.13 -0.09 16 21 C -0.16 -0.06 6.40 -20.00 -0.13 -0.19 16 22 C -0.04 0.22 10.09 22.44 0.23 0.45 16 23 C -0.08 0.85 10.04 22.36 0.22 1.07 16 24 C -0.08 0.87 10.03 22.36 0.22 1.10 16 25 C -0.04 0.24 10.09 22.44 0.23 0.47 16 26 C 0.58 3.03 8.02 86.82 0.70 3.73 16 27 O -0.49 -5.30 17.44 -3.53 -0.06 -5.36 16 28 C 0.05 0.17 6.32 72.07 0.46 0.63 16 29 O -0.38 -2.35 10.44 -122.14 -1.28 -3.63 16 30 C -0.13 -0.66 6.88 67.37 0.46 -0.19 16 31 Cl 0.02 0.11 27.20 -2.72 -0.07 0.04 16 32 S 0.31 -0.43 20.18 -56.49 -1.14 -1.57 16 33 H 0.39 -2.06 8.70 -74.06 -0.64 -2.71 16 34 H 0.14 -0.67 7.96 -2.39 -0.02 -0.69 16 35 H -0.27 -0.59 7.11 99.48 0.71 0.11 16 36 H -0.25 0.50 7.11 99.48 0.71 1.20 16 37 H 0.16 0.57 8.06 -2.91 -0.02 0.55 16 38 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.08 0.25 6.71 -2.39 -0.02 0.24 16 41 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.15 -1.09 8.06 -2.91 -0.02 -1.11 16 43 H 0.18 -2.82 8.06 -2.91 -0.02 -2.85 16 44 H 0.18 -2.90 8.06 -2.91 -0.02 -2.93 16 45 H 0.16 -1.33 8.06 -2.91 -0.02 -1.35 16 46 H 0.08 0.25 6.63 -2.39 -0.02 0.23 16 47 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 Total: 0.00 -24.57 437.11 -0.11 -24.68 By element: Atomic # 1 Polarization: -8.16 SS G_CDS: 0.49 Total: -7.68 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: 5.16 Total: 18.17 kcal Atomic # 7 Polarization: -2.17 SS G_CDS: -1.87 Total: -4.05 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -4.79 Total: -28.63 kcal Atomic # 14 Polarization: -3.08 SS G_CDS: 2.12 Total: -0.96 kcal Atomic # 16 Polarization: -0.43 SS G_CDS: -1.14 Total: -1.57 kcal Atomic # 17 Polarization: 0.11 SS G_CDS: -0.07 Total: 0.04 kcal Total: -24.57 -0.11 -24.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13431042_13594054.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.131 kcal (2) G-P(sol) polarization free energy of solvation -24.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds