Wall clock time and date at job start Sat Mar 6 2021 05:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47246 * 2 1 4 4 C 1.52998 * 109.46952 * 239.99683 * 2 1 3 5 5 Si 1.86301 * 109.46702 * 120.00032 * 2 1 3 6 6 C 1.86309 * 109.47207 * 299.99934 * 5 2 1 7 7 C 1.86297 * 109.46918 * 180.02562 * 5 2 1 8 8 O 1.63097 * 109.47480 * 59.99925 * 5 2 1 9 9 C 1.42895 * 114.00269 * 180.02562 * 8 5 2 10 10 C 1.52999 * 109.47146 * 179.97438 * 9 8 5 11 11 O 1.42897 * 109.47202 * 64.99972 * 10 9 8 12 12 C 1.42900 * 114.00300 * 179.97438 * 11 10 9 13 13 C 1.52991 * 109.47265 * 179.97438 * 12 11 10 14 14 O 1.45205 * 109.47456 * 65.00216 * 13 12 11 15 15 C 1.34814 * 117.00071 * 180.02562 * 14 13 12 16 16 O 1.21573 * 120.00299 * 359.97438 * 15 14 13 17 17 C 1.46886 * 119.99673 * 180.02562 * 15 14 13 18 18 C 1.36320 * 123.50796 * 180.02562 * 17 15 14 19 19 Cl 1.73606 * 124.60850 * 359.97438 * 18 17 15 20 20 S 1.70439 * 110.77967 * 179.97438 * 18 17 15 21 21 C 1.75484 * 92.47875 * 359.97438 * 20 18 17 22 22 C 1.50701 * 124.67604 * 180.02562 * 21 20 18 23 23 O 1.42903 * 109.46878 * 245.02043 * 22 21 20 24 24 Si 1.86300 * 109.46948 * 5.02261 * 22 21 20 25 25 H 1.48503 * 109.47262 * 60.00072 * 24 22 21 26 26 H 1.48500 * 109.46912 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46942 * 299.99736 * 24 22 21 28 28 C 1.32670 * 110.65339 * 0.26144 * 21 20 18 29 29 H 1.09004 * 109.47079 * 300.00343 * 1 2 3 30 30 H 1.08999 * 109.46488 * 60.00072 * 1 2 3 31 31 H 1.08993 * 109.47224 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46724 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.46716 * 299.99879 * 3 2 1 34 34 H 1.08999 * 109.46907 * 59.99818 * 3 2 1 35 35 H 1.09003 * 109.47301 * 300.00083 * 4 2 1 36 36 H 1.08999 * 109.47325 * 60.00757 * 4 2 1 37 37 H 1.09005 * 109.46578 * 180.02562 * 4 2 1 38 38 H 1.08999 * 109.47326 * 180.02562 * 6 5 2 39 39 H 1.09004 * 109.46549 * 299.99992 * 6 5 2 40 40 H 1.08994 * 109.46992 * 59.99729 * 6 5 2 41 41 H 1.08998 * 109.47100 * 299.99237 * 7 5 2 42 42 H 1.08992 * 109.47420 * 60.00085 * 7 5 2 43 43 H 1.09011 * 109.47167 * 179.97438 * 7 5 2 44 44 H 1.08999 * 109.47123 * 59.99928 * 9 8 5 45 45 H 1.09003 * 109.46961 * 299.99899 * 9 8 5 46 46 H 1.08994 * 109.47213 * 304.99728 * 10 9 8 47 47 H 1.09003 * 109.47206 * 184.99993 * 10 9 8 48 48 H 1.09005 * 109.46752 * 59.99770 * 12 11 10 49 49 H 1.09001 * 109.47418 * 300.00263 * 12 11 10 50 50 H 1.09008 * 109.47722 * 305.00354 * 13 12 11 51 51 H 1.09004 * 109.47330 * 185.00342 * 13 12 11 52 52 H 1.09001 * 109.46927 * 125.01978 * 22 21 20 53 53 H 0.96695 * 113.99582 * 59.99825 * 23 22 21 54 54 H 1.07991 * 123.44933 * 179.73607 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1509 -0.8783 1.5212 6 6 1.5299 0.0000 3.0424 7 6 4.0139 -0.8776 1.5216 8 8 1.6073 -2.4159 1.5212 9 6 2.0283 -3.1813 2.6521 10 6 1.4625 -4.5990 2.5477 11 8 2.0308 -5.2565 1.4134 12 6 1.5668 -6.5947 1.2243 13 6 2.2373 -7.1971 -0.0119 14 8 3.6656 -7.3152 0.2212 15 6 4.4083 -7.8316 -0.7784 16 8 3.8763 -8.1743 -1.8165 17 6 5.8601 -7.9814 -0.6128 18 6 6.6784 -8.4934 -1.5753 19 17 6.1444 -9.0451 -3.1323 20 16 8.2971 -8.5184 -1.0421 21 6 7.8754 -7.8241 0.5134 22 6 8.8604 -7.5238 1.6137 23 8 8.5815 -8.3546 2.7424 24 14 10.5898 -7.8594 1.0075 25 1 10.8795 -6.9960 -0.1655 26 1 11.5603 -7.5640 2.0919 27 1 10.7079 -9.2863 0.6133 28 6 6.5691 -7.6047 0.5892 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7490 -1.2492 36 1 1.6768 -0.2075 -2.1392 37 1 3.1301 -0.7217 -1.2489 38 1 1.8935 -0.5135 3.9324 39 1 1.8933 1.0277 3.0423 40 1 0.4399 0.0001 3.0423 41 1 4.3776 -1.3913 0.6317 42 1 4.3769 0.1501 1.5219 43 1 4.3773 -1.3911 2.4119 44 1 1.6635 -2.7112 3.5653 45 1 3.1172 -3.2252 2.6760 46 1 0.3795 -4.5505 2.4347 47 1 1.7088 -5.1560 3.4517 48 1 0.4858 -6.5880 1.0840 49 1 1.8156 -7.1929 2.1009 50 1 2.0618 -6.5506 -0.8719 51 1 1.8182 -8.1841 -0.2079 52 1 8.7737 -6.4765 1.9030 53 1 8.6402 -9.3019 2.5575 54 1 6.0855 -7.1853 1.4589 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13431042_16896872.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:26:23 Heat of formation + Delta-G solvation = -228.069039 kcal Electronic energy + Delta-G solvation = -34637.794877 eV Core-core repulsion = 29851.388600 eV Total energy + Delta-G solvation = -4786.406277 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 424.119 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.59456 -39.43449 -39.06765 -38.21649 -37.73359 -37.16793 -37.01518 -36.82137 -32.16680 -31.66233 -29.81394 -29.20676 -29.05012 -27.83487 -27.37714 -27.10059 -26.47978 -23.60143 -23.41731 -22.31186 -21.15402 -20.41096 -19.60895 -18.46093 -18.15292 -17.95214 -17.80309 -17.60749 -17.18358 -16.34525 -16.31138 -16.20588 -16.02900 -15.77387 -15.59526 -15.18526 -14.90096 -14.83493 -14.80865 -14.74564 -14.43384 -14.36690 -14.10788 -13.93874 -13.80233 -13.51117 -13.34667 -13.15771 -13.02672 -12.96010 -12.92872 -12.88460 -12.70633 -12.64443 -12.50783 -12.43582 -12.37186 -12.27690 -12.23427 -11.80676 -11.79093 -11.75479 -11.66782 -11.48313 -11.41737 -11.15914 -10.56728 -10.53610 -10.26877 -10.03888 -10.01925 -9.82372 -0.85214 -0.35928 0.31050 0.53412 0.85841 1.06075 1.40093 1.47348 1.57948 1.64090 1.79876 1.81468 1.90921 2.16496 2.51702 2.68576 3.24210 3.58224 3.69818 3.78713 3.87648 4.07254 4.11994 4.12522 4.17432 4.26336 4.27956 4.35703 4.45558 4.51207 4.52456 4.57354 4.61575 4.68702 4.75076 4.77042 4.79714 4.80554 4.80958 4.82225 4.83514 4.87482 4.94759 4.99362 5.08643 5.08889 5.20580 5.23049 5.33856 5.40318 5.44821 5.55889 5.61724 5.66028 6.28711 6.57339 6.65908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.384 4.384 3 C -0.140 4.140 4 C -0.135 4.135 5 Si 1.312 2.688 6 C -0.513 4.513 7 C -0.517 4.517 8 O -0.637 6.637 9 C 0.074 3.926 10 C 0.053 3.947 11 O -0.399 6.399 12 C 0.063 3.937 13 C 0.066 3.934 14 O -0.342 6.342 15 C 0.523 3.477 16 O -0.519 6.519 17 C -0.156 4.156 18 C -0.127 4.127 19 Cl 0.013 6.987 20 S 0.265 5.735 21 C -0.231 4.231 22 C -0.030 4.030 23 O -0.541 6.541 24 Si 0.900 3.100 25 H -0.237 1.237 26 H -0.233 1.233 27 H -0.228 1.228 28 C -0.048 4.048 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.084 0.916 48 H 0.093 0.907 49 H 0.076 0.924 50 H 0.068 0.932 51 H 0.099 0.901 52 H 0.146 0.854 53 H 0.392 0.608 54 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.214 0.066 6.340 6.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.426 4.426 3 C -0.197 4.197 4 C -0.193 4.193 5 Si 1.441 2.559 6 C -0.615 4.615 7 C -0.619 4.619 8 O -0.597 6.597 9 C -0.001 4.001 10 C -0.023 4.023 11 O -0.319 6.319 12 C -0.013 4.013 13 C -0.008 4.008 14 O -0.258 6.258 15 C 0.367 3.633 16 O -0.410 6.410 17 C -0.174 4.174 18 C -0.274 4.274 19 Cl 0.042 6.958 20 S 0.530 5.470 21 C -0.349 4.349 22 C -0.144 4.144 23 O -0.348 6.348 24 Si 0.720 3.280 25 H -0.160 1.160 26 H -0.155 1.155 27 H -0.150 1.150 28 C -0.076 4.076 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.112 0.888 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.102 0.898 48 H 0.111 0.889 49 H 0.094 0.906 50 H 0.087 0.913 51 H 0.117 0.883 52 H 0.163 0.837 53 H 0.242 0.758 54 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 4.077 -0.244 4.961 6.426 hybrid contribution -2.148 0.262 -0.172 2.170 sum 1.930 0.018 4.789 5.163 Atomic orbital electron populations 1.21524 0.94162 1.01650 1.01885 1.25944 1.00489 1.03051 1.13128 1.21596 1.01186 0.94631 1.02273 1.21515 1.00790 0.99822 0.97124 0.76273 0.62351 0.52981 0.64251 1.27029 1.06932 1.09764 1.17792 1.27113 1.25738 1.04740 1.04271 1.85392 1.79316 1.46554 1.48456 1.22332 0.99521 0.90647 0.87615 1.22854 0.98344 0.92152 0.88931 1.87984 1.68446 1.26575 1.48933 1.22655 0.98253 0.83612 0.96756 1.23338 0.75958 1.02062 0.99408 1.86595 1.22517 1.74569 1.42118 1.20423 0.87457 0.74113 0.81335 1.90913 1.73816 1.47343 1.28912 1.19502 0.91137 1.10418 0.96344 1.25728 1.01915 1.05900 0.93833 1.98437 1.89704 1.86661 1.21043 1.83342 0.98792 1.57485 1.07333 1.25057 0.99483 1.09913 1.00422 1.24437 1.03935 1.00233 0.85766 1.86541 1.93321 1.22175 1.32763 0.86171 0.76480 0.83358 0.82004 1.16006 1.15526 1.15048 1.21136 0.92078 0.97915 0.96462 0.91770 0.93478 0.92736 0.91979 0.93230 0.91521 0.93051 0.93396 0.92476 0.90641 0.90380 0.90954 0.91911 0.90439 0.90946 0.88822 0.91577 0.91793 0.89827 0.88879 0.90559 0.91325 0.88340 0.83665 0.75807 0.80484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.23 7.85 71.98 0.56 0.34 16 2 C -0.38 -0.47 0.53 -10.79 -0.01 -0.48 16 3 C -0.14 0.01 7.85 71.98 0.56 0.58 16 4 C -0.14 -0.49 7.85 71.98 0.56 0.08 16 5 Si 1.31 -1.55 8.45 68.60 0.58 -0.97 16 6 C -0.51 1.31 8.50 113.37 0.96 2.27 16 7 C -0.52 0.04 8.50 113.37 0.96 1.01 16 8 O -0.64 -1.37 8.52 -144.34 -1.23 -2.60 16 9 C 0.07 -0.14 5.50 71.98 0.40 0.26 16 10 C 0.05 -0.10 6.32 71.98 0.45 0.36 16 11 O -0.40 -1.49 10.28 -136.02 -1.40 -2.89 16 12 C 0.06 -0.06 6.33 71.98 0.46 0.39 16 13 C 0.07 0.20 5.86 71.98 0.42 0.62 16 14 O -0.34 -2.25 9.92 -54.60 -0.54 -2.79 16 15 C 0.52 4.89 7.92 70.09 0.56 5.44 16 16 O -0.52 -7.29 14.71 19.60 0.29 -7.00 16 17 C -0.16 -0.89 5.98 -19.85 -0.12 -1.00 16 18 C -0.13 -0.65 6.88 67.37 0.46 -0.18 16 19 Cl 0.01 0.10 27.20 -2.72 -0.07 0.02 16 20 S 0.26 -0.21 20.18 -56.49 -1.14 -1.35 16 21 C -0.23 0.54 5.65 24.52 0.14 0.68 16 22 C -0.03 0.17 2.94 71.24 0.21 0.38 16 23 O -0.54 2.45 12.88 -148.98 -1.92 0.53 16 24 Si 0.90 -4.53 26.20 68.60 1.80 -2.73 16 25 H -0.24 0.88 7.11 99.48 0.71 1.59 16 26 H -0.23 0.63 7.11 99.48 0.71 1.34 16 27 H -0.23 1.22 7.11 99.48 0.71 1.93 16 28 C -0.05 -0.02 9.98 22.71 0.23 0.20 16 29 H 0.06 -0.03 7.79 -2.39 -0.02 -0.05 16 30 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.05 0.14 7.96 -2.39 -0.02 0.13 16 32 H 0.06 -0.08 7.79 -2.39 -0.02 -0.10 16 33 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.07 -0.15 7.79 -2.39 -0.02 -0.17 16 35 H 0.05 0.27 7.97 -2.39 -0.02 0.25 16 36 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.06 0.15 7.79 -2.38 -0.02 0.13 16 38 H 0.07 -0.31 7.48 -2.39 -0.02 -0.33 16 39 H 0.08 -0.24 7.79 -2.38 -0.02 -0.26 16 40 H 0.07 -0.15 7.79 -2.39 -0.02 -0.17 16 41 H 0.06 0.14 7.79 -2.39 -0.02 0.12 16 42 H 0.08 -0.09 7.79 -2.39 -0.02 -0.11 16 43 H 0.07 -0.10 7.48 -2.38 -0.02 -0.11 16 44 H 0.09 -0.68 7.21 -2.39 -0.02 -0.69 16 45 H 0.07 -0.17 7.22 -2.39 -0.02 -0.19 16 46 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 47 H 0.08 -0.55 8.14 -2.39 -0.02 -0.57 16 48 H 0.09 -0.45 8.14 -2.38 -0.02 -0.47 16 49 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 50 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 51 H 0.10 0.04 8.14 -2.38 -0.02 0.02 16 52 H 0.15 -1.17 7.96 -2.39 -0.02 -1.19 16 53 H 0.39 -4.22 8.70 -74.06 -0.64 -4.87 16 54 H 0.18 -0.28 8.06 -2.92 -0.02 -0.30 16 Total: 0.00 -16.92 469.72 4.18 -12.74 By element: Atomic # 1 Polarization: -4.92 SS G_CDS: 1.00 Total: -3.92 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 6.82 Total: 10.95 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -4.80 Total: -14.74 kcal Atomic # 14 Polarization: -6.08 SS G_CDS: 2.38 Total: -3.70 kcal Atomic # 16 Polarization: -0.21 SS G_CDS: -1.14 Total: -1.35 kcal Atomic # 17 Polarization: 0.10 SS G_CDS: -0.07 Total: 0.02 kcal Total: -16.92 4.18 -12.74 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13431042_16896872.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -215.328 kcal (2) G-P(sol) polarization free energy of solvation -16.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds