Wall clock time and date at job start Sat Mar 6 2021 05:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00279 * 2 1 4 4 C 1.53002 * 112.84407 * 66.01861 * 3 2 1 5 5 F 1.39894 * 109.47243 * 283.56026 * 4 3 2 6 6 F 1.39903 * 109.47412 * 43.56566 * 4 3 2 7 7 F 1.39908 * 109.46618 * 163.56645 * 4 3 2 8 8 C 1.53778 * 113.61575 * 294.82455 * 3 2 1 9 9 C 1.53779 * 87.07923 * 270.79788 * 8 3 2 10 10 H 1.08997 * 113.61741 * 219.93436 * 9 8 3 11 11 C 1.53002 * 113.61479 * 89.11807 * 9 8 3 12 12 O 1.45200 * 109.47245 * 174.99945 * 11 9 8 13 13 C 1.34815 * 117.00272 * 179.97438 * 12 11 9 14 14 O 1.21578 * 119.99777 * 359.97438 * 13 12 11 15 15 C 1.46878 * 120.00141 * 179.72855 * 13 12 11 16 16 C 1.36324 * 123.50794 * 180.30471 * 15 13 12 17 17 Cl 1.73605 * 124.60944 * 359.96872 * 16 15 13 18 18 S 1.70441 * 110.78112 * 179.97438 * 16 15 13 19 19 C 1.75489 * 92.47525 * 359.97438 * 18 16 15 20 20 C 1.50697 * 124.67297 * 179.97438 * 19 18 16 21 21 O 1.42900 * 109.47583 * 244.97687 * 20 19 18 22 22 Si 1.86295 * 109.47270 * 4.98069 * 20 19 18 23 23 C 1.32663 * 110.65368 * 359.71924 * 19 18 16 24 24 C 1.53781 * 113.69076 * 197.28451 * 3 2 1 25 25 H 1.09000 * 109.46778 * 62.48164 * 1 2 3 26 26 H 1.09000 * 109.47082 * 182.47869 * 1 2 3 27 27 H 1.09004 * 109.46988 * 302.48197 * 1 2 3 28 28 H 1.08997 * 113.61311 * 156.24800 * 8 3 2 29 29 H 1.08998 * 113.68911 * 25.35343 * 8 3 2 30 30 H 1.08996 * 109.47118 * 55.00032 * 11 9 8 31 31 H 1.09004 * 109.47055 * 294.99676 * 11 9 8 32 32 H 1.09003 * 109.47128 * 124.97953 * 20 19 18 33 33 H 0.96704 * 113.99745 * 60.00372 * 21 20 19 34 34 H 1.48503 * 110.00091 * 58.67632 * 22 20 19 35 35 H 1.48504 * 110.00347 * 179.97438 * 22 20 19 36 36 H 1.08002 * 123.44963 * 180.26975 * 23 19 18 37 37 H 1.09002 * 113.61595 * 334.58093 * 24 3 2 38 38 H 1.08998 * 113.61438 * 203.67605 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7284 2.0812 1.2883 5 9 0.4118 2.5536 1.2695 6 9 1.9052 1.2365 2.3895 7 9 2.6107 3.1628 1.3838 8 6 1.7205 2.1088 -1.2788 9 6 2.9972 1.4845 -1.8661 10 1 3.5925 2.1813 -2.4562 11 6 2.7553 0.1548 -2.5832 12 8 3.9903 -0.2935 -3.2015 13 6 3.9484 -1.4588 -3.8779 14 8 2.9078 -2.0836 -3.9486 15 6 5.1585 -1.9711 -4.5341 16 6 5.1956 -3.1363 -5.2407 17 17 3.8364 -4.1904 -5.4761 18 16 6.7577 -3.4176 -5.8616 19 6 7.3859 -1.9367 -5.1602 20 6 8.8107 -1.4634 -5.2904 21 8 9.4310 -1.4597 -4.0031 22 14 9.7439 -2.6079 -6.4261 23 6 6.4323 -1.2884 -4.5042 24 6 3.4900 1.3229 -0.4184 25 1 -0.3633 0.4748 -0.9114 26 1 -0.3633 -1.0267 0.0444 27 1 -0.3633 0.5519 0.8669 28 1 1.7859 3.1880 -1.1406 29 1 0.8088 1.8021 -1.7915 30 1 1.9929 0.2892 -3.3505 31 1 2.4184 -0.5906 -1.8627 32 1 8.8221 -0.4542 -5.7021 33 1 9.4564 -2.3271 -3.5762 34 1 9.0901 -2.6451 -7.7590 35 1 11.1504 -2.1517 -6.5634 36 1 6.5922 -0.3488 -3.9964 37 1 4.0067 0.3807 -0.2356 38 1 4.0391 2.1873 -0.0451 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13431042_17321610.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:41:25 Heat of formation + Delta-G solvation = -235.274206 kcal Electronic energy + Delta-G solvation = -31766.036816 eV Core-core repulsion = 26508.231803 eV Total energy + Delta-G solvation = -5257.805013 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.028 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -51.26968 -48.80078 -48.73926 -41.85685 -41.10220 -39.19098 -38.19188 -37.70391 -37.02669 -36.86942 -31.82945 -30.78673 -28.31852 -27.81472 -26.90783 -26.79117 -25.87765 -23.35088 -22.31208 -21.13116 -20.63001 -19.81596 -19.56864 -19.48990 -19.25749 -18.28159 -17.69528 -17.61543 -17.47774 -17.16540 -16.50181 -16.32604 -15.92794 -15.74866 -15.68117 -15.62438 -15.53556 -15.28079 -15.13690 -14.91639 -14.89769 -14.77329 -14.56181 -14.42238 -14.19861 -14.06151 -13.74924 -13.31675 -13.17401 -12.95647 -12.76324 -12.66293 -12.43695 -12.38642 -12.30308 -12.03658 -11.89754 -11.68787 -11.66896 -11.40405 -10.81897 -10.58289 -9.99052 -9.75981 -5.13087 -0.80399 -0.28559 0.37275 0.55454 0.91316 1.17570 1.51562 1.55005 1.62340 1.81963 1.91929 2.07229 2.54950 2.61425 2.87256 3.19518 3.28752 3.34241 3.45626 3.59567 3.66718 3.75353 3.89307 4.20796 4.22268 4.22918 4.32059 4.39159 4.44644 4.48615 4.50488 4.61570 4.67968 4.76472 4.80235 4.82177 4.95041 5.00212 5.28285 5.69339 6.58752 6.72413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.348 6.348 3 C 0.032 3.968 4 C 0.434 3.566 5 F -0.185 7.185 6 F -0.188 7.188 7 F -0.174 7.174 8 C -0.135 4.135 9 C -0.091 4.091 10 H 0.124 0.876 11 C 0.078 3.922 12 O -0.344 6.344 13 C 0.523 3.477 14 O -0.517 6.517 15 C -0.159 4.159 16 C -0.132 4.132 17 Cl 0.012 6.988 18 S 0.298 5.702 19 C -0.236 4.236 20 C -0.023 4.023 21 O -0.544 6.544 22 Si 0.719 3.281 23 C -0.053 4.053 24 C -0.111 4.111 25 H 0.068 0.932 26 H 0.108 0.892 27 H 0.049 0.951 28 H 0.129 0.871 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.133 0.867 33 H 0.398 0.602 34 H -0.257 1.257 35 H -0.266 1.266 36 H 0.175 0.825 37 H 0.090 0.910 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.752 0.000 -2.646 4.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.266 6.266 3 C -0.011 4.011 4 C 0.379 3.621 5 F -0.166 7.166 6 F -0.170 7.170 7 F -0.156 7.156 8 C -0.172 4.172 9 C -0.110 4.110 10 H 0.142 0.858 11 C 0.004 3.996 12 O -0.261 6.261 13 C 0.367 3.633 14 O -0.408 6.408 15 C -0.177 4.177 16 C -0.278 4.278 17 Cl 0.040 6.960 18 S 0.564 5.436 19 C -0.353 4.353 20 C -0.136 4.136 21 O -0.353 6.353 22 Si 0.621 3.379 23 C -0.080 4.080 24 C -0.148 4.148 25 H 0.087 0.913 26 H 0.126 0.874 27 H 0.067 0.933 28 H 0.147 0.853 29 H 0.120 0.880 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.150 0.850 33 H 0.249 0.751 34 H -0.183 1.183 35 H -0.191 1.191 36 H 0.192 0.808 37 H 0.109 0.891 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.546 -1.029 -4.382 6.397 hybrid contribution -2.043 1.638 1.536 3.036 sum 2.503 0.609 -2.846 3.839 Atomic orbital electron populations 1.23263 0.78812 1.05020 1.01918 1.88081 1.22026 1.22643 1.93856 1.24247 1.00851 0.86224 0.89740 1.21482 0.74132 0.78699 0.87763 1.93175 1.37206 1.89373 1.96841 1.93189 1.95009 1.71102 1.57652 1.93175 1.68800 1.56995 1.96597 1.23647 0.99696 1.01686 0.92144 1.22040 0.98129 0.95545 0.95237 0.85789 1.23097 0.83475 0.96223 0.96780 1.86498 1.39518 1.37119 1.62961 1.20419 0.87636 0.79112 0.76122 1.90921 1.32633 1.58406 1.58790 1.19443 0.94591 0.96906 1.06764 1.25935 0.99198 0.97450 1.05230 1.98440 1.40586 1.62049 1.94875 1.83166 0.93394 1.19413 1.47663 1.25005 1.02064 1.00405 1.07828 1.24532 0.88053 1.07562 0.93417 1.86528 1.79517 1.38103 1.31106 0.94344 0.79302 0.85690 0.78533 1.21118 0.87728 1.00890 0.98313 1.23354 0.90383 1.05951 0.95156 0.91319 0.87408 0.93253 0.85313 0.87954 0.90489 0.90233 0.84987 0.75104 1.18292 1.19092 0.80820 0.89122 0.85134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 10.43 113.37 1.18 1.18 16 2 O -0.35 -0.85 8.36 -148.98 -1.25 -2.10 16 3 C 0.03 -0.02 0.85 -10.27 -0.01 -0.02 16 4 C 0.43 1.14 2.51 71.98 0.18 1.32 16 5 F -0.18 -0.59 15.24 44.97 0.69 0.10 16 6 F -0.19 -1.29 17.09 44.97 0.77 -0.52 16 7 F -0.17 -0.35 15.82 44.97 0.71 0.36 16 8 C -0.13 0.70 6.52 31.12 0.20 0.91 16 9 C -0.09 0.39 4.21 -10.27 -0.04 0.35 16 10 H 0.12 -0.88 8.14 -2.39 -0.02 -0.90 16 11 C 0.08 0.06 5.06 71.98 0.36 0.43 16 12 O -0.34 -1.20 9.95 -57.28 -0.57 -1.77 16 13 C 0.52 3.72 7.92 70.08 0.56 4.27 16 14 O -0.52 -6.29 14.71 19.58 0.29 -6.00 16 15 C -0.16 -0.56 5.98 -19.85 -0.12 -0.68 16 16 C -0.13 -0.37 6.88 67.37 0.46 0.10 16 17 Cl 0.01 0.07 27.20 -2.72 -0.07 -0.01 16 18 S 0.30 -1.13 20.18 -56.49 -1.14 -2.27 16 19 C -0.24 0.98 5.65 24.52 0.14 1.12 16 20 C -0.02 0.14 2.94 71.24 0.21 0.35 16 21 O -0.54 2.80 12.88 -148.98 -1.92 0.88 16 22 Si 0.72 -4.64 30.92 68.60 2.12 -2.52 16 23 C -0.05 0.07 9.98 22.71 0.23 0.30 16 24 C -0.11 0.32 6.89 31.12 0.21 0.53 16 25 H 0.07 -0.28 6.76 -2.39 -0.02 -0.30 16 26 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 27 H 0.05 0.00 6.25 -2.39 -0.01 -0.02 16 28 H 0.13 -1.03 8.06 -2.39 -0.02 -1.05 16 29 H 0.10 -0.65 6.70 -2.39 -0.02 -0.67 16 30 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.08 0.31 6.12 -2.39 -0.01 0.30 16 32 H 0.13 -0.85 7.96 -2.39 -0.02 -0.87 16 33 H 0.40 -5.09 8.70 -74.05 -0.64 -5.74 16 34 H -0.26 0.63 7.11 99.48 0.71 1.34 16 35 H -0.27 -0.03 7.11 99.48 0.71 0.68 16 36 H 0.17 -0.58 8.06 -2.91 -0.02 -0.61 16 37 H 0.09 -0.08 8.10 -2.39 -0.02 -0.10 16 38 H 0.13 -0.73 7.01 -2.39 -0.02 -0.75 16 Total: 0.00 -16.42 360.52 3.75 -12.67 By element: Atomic # 1 Polarization: -9.51 SS G_CDS: 0.55 Total: -8.96 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 3.57 Total: 10.14 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -3.45 Total: -8.99 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 2.17 Total: -0.06 kcal Atomic # 14 Polarization: -4.64 SS G_CDS: 2.12 Total: -2.52 kcal Atomic # 16 Polarization: -1.13 SS G_CDS: -1.14 Total: -2.27 kcal Atomic # 17 Polarization: 0.07 SS G_CDS: -0.07 Total: -0.01 kcal Total: -16.42 3.75 -12.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13431042_17321610.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -222.604 kcal (2) G-P(sol) polarization free energy of solvation -16.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds