Wall clock time and date at job start Sat Mar 6 2021 04:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86307 * 1 3 3 C 1.86296 * 109.46944 * 2 1 4 4 C 1.86295 * 109.47200 * 239.99807 * 2 1 3 5 5 C 1.86800 * 109.46725 * 119.99960 * 2 1 3 6 6 C 1.38232 * 120.00098 * 90.00714 * 5 2 1 7 7 C 1.38235 * 120.00149 * 180.02562 * 6 5 2 8 8 C 1.38233 * 119.99903 * 359.97438 * 7 6 5 9 9 C 1.50706 * 120.00041 * 179.97438 * 8 7 6 10 10 O 1.45200 * 109.47233 * 90.00245 * 9 8 7 11 11 C 1.34811 * 117.00148 * 180.02562 * 10 9 8 12 12 O 1.21579 * 119.99962 * 359.97438 * 11 10 9 13 13 C 1.46884 * 120.00074 * 180.02562 * 11 10 9 14 14 C 1.36316 * 123.50724 * 179.97438 * 13 11 10 15 15 Cl 1.73605 * 124.61053 * 0.02562 * 14 13 11 16 16 S 1.70446 * 110.78003 * 180.02562 * 14 13 11 17 17 C 1.75489 * 92.47483 * 359.97438 * 16 14 13 18 18 C 1.50695 * 124.67233 * 179.97438 * 17 16 14 19 19 O 1.42898 * 109.46955 * 120.02901 * 18 17 16 20 20 Si 1.86300 * 109.47389 * 0.02810 * 18 17 16 21 21 H 1.48503 * 109.47262 * 179.97438 * 20 18 17 22 22 H 1.48500 * 109.46912 * 299.99977 * 20 18 17 23 23 H 1.48503 * 109.46942 * 59.99457 * 20 18 17 24 24 C 1.32660 * 110.65433 * 0.26454 * 17 16 14 25 25 C 1.38237 * 120.00067 * 0.25550 * 8 7 6 26 26 C 1.38233 * 119.99953 * 270.02096 * 5 2 1 27 27 H 1.09000 * 109.47074 * 300.00094 * 1 2 3 28 28 H 1.09001 * 109.46971 * 60.00100 * 1 2 3 29 29 H 1.09001 * 109.46807 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47410 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47700 * 299.99819 * 3 2 1 32 32 H 1.09000 * 109.47312 * 60.00051 * 3 2 1 33 33 H 1.08991 * 109.47620 * 300.00024 * 4 2 1 34 34 H 1.09001 * 109.47082 * 60.00161 * 4 2 1 35 35 H 1.09005 * 109.47015 * 180.02562 * 4 2 1 36 36 H 1.08001 * 120.00142 * 359.97438 * 6 5 2 37 37 H 1.08002 * 120.00226 * 179.97438 * 7 6 5 38 38 H 1.08994 * 109.47067 * 330.00146 * 9 8 7 39 39 H 1.09003 * 109.46899 * 210.00218 * 9 8 7 40 40 H 1.09001 * 109.47545 * 240.02444 * 18 17 16 41 41 H 0.96700 * 113.99995 * 299.99800 * 19 18 17 42 42 H 1.07999 * 123.45247 * 179.71197 * 24 17 16 43 43 H 1.08007 * 119.99849 * 179.72131 * 25 8 7 44 44 H 1.08006 * 120.00308 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4841 -0.8783 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7161 -2.2431 1.4910 7 6 3.1763 -2.8949 2.6199 8 6 3.4065 -2.1840 3.7828 9 6 3.9076 -2.8946 5.0137 10 8 5.3596 -2.8955 5.0146 11 6 5.9707 -3.4969 6.0550 12 8 5.3076 -4.0062 6.9377 13 6 7.4374 -3.5358 6.1228 14 6 8.1284 -4.1233 7.1404 15 17 7.3966 -4.9112 8.5033 16 16 9.8086 -3.9792 6.8927 17 6 9.5886 -3.1090 5.3847 18 6 10.7106 -2.6051 4.5141 19 8 10.6164 -3.2055 3.2208 20 14 12.3455 -3.0510 5.2881 21 1 13.4513 -2.5550 4.4298 22 1 12.4434 -2.4271 6.6321 23 1 12.4450 -4.5269 5.4191 24 6 8.2984 -2.9505 5.1200 25 6 3.1715 -0.8222 3.8185 26 6 2.7155 -0.1697 2.6883 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.5741 1.7565 0.0005 31 1 2.1207 2.2704 -0.8900 32 1 2.1207 2.2703 0.8900 33 1 2.1208 -1.9058 -1.5211 34 1 2.1208 -0.3644 -2.4111 35 1 3.5741 -0.8786 -1.5208 36 1 2.5359 -2.7987 0.5826 37 1 3.3560 -3.9595 2.5933 38 1 3.5437 -3.9220 5.0136 39 1 3.5441 -2.3804 5.9034 40 1 10.6376 -1.5218 4.4179 41 1 10.6739 -4.1707 3.2301 42 1 7.9290 -2.4384 4.2437 43 1 3.3471 -0.2675 4.7285 44 1 2.5349 0.8948 2.7153 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_13431042_9435856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:51:54 Heat of formation + Delta-G solvation = -109.046916 kcal Electronic energy + Delta-G solvation = -27053.782943 eV Core-core repulsion = 23019.148151 eV Total energy + Delta-G solvation = -4034.634792 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 384.058 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.48266 -40.04063 -39.19689 -38.15175 -37.35886 -37.00264 -33.03613 -31.89222 -31.79145 -29.60013 -28.45073 -28.42100 -27.95115 -26.98573 -25.75273 -23.48717 -22.37745 -22.02991 -21.05978 -19.55392 -18.40797 -18.02053 -17.67420 -17.44647 -17.12630 -16.50700 -16.11843 -15.99988 -15.92143 -15.30376 -14.91367 -14.78790 -14.47885 -14.38099 -14.37405 -14.18382 -14.12977 -13.90070 -13.83966 -13.70386 -13.42061 -13.27401 -13.26689 -13.10842 -13.05045 -12.68479 -12.62685 -12.53816 -12.37711 -12.23008 -12.05202 -11.89915 -11.58435 -11.30328 -11.03924 -10.91402 -10.84099 -10.73299 -9.97852 -9.82806 -9.78709 -9.69596 -0.76873 -0.34599 0.11044 0.33290 0.53978 0.56810 0.89493 0.94267 1.23310 1.31217 1.68660 1.74015 1.75186 1.84047 1.94027 2.03226 2.53385 2.95861 3.15099 3.41644 3.66805 3.78665 3.82741 3.90647 4.10522 4.25111 4.26791 4.35620 4.49675 4.50132 4.66798 4.69534 4.70907 4.74936 4.75050 4.75700 4.75984 4.76422 4.91706 4.99301 5.14698 5.32082 5.41911 5.46719 5.49576 5.53112 5.61407 5.61808 6.10184 6.32404 6.75190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.360 4.360 6 C -0.091 4.091 7 C -0.105 4.105 8 C -0.090 4.090 9 C 0.111 3.889 10 O -0.343 6.343 11 C 0.525 3.475 12 O -0.488 6.488 13 C -0.143 4.143 14 C -0.110 4.110 15 Cl 0.030 6.970 16 S 0.235 5.765 17 C -0.243 4.243 18 C -0.036 4.036 19 O -0.529 6.529 20 Si 0.883 3.117 21 H -0.219 1.219 22 H -0.229 1.229 23 H -0.230 1.230 24 C -0.046 4.046 25 C -0.105 4.105 26 C -0.092 4.092 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.132 0.868 41 H 0.380 0.620 42 H 0.169 0.831 43 H 0.121 0.879 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.143 1.487 -2.769 3.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.402 4.402 6 C -0.109 4.109 7 C -0.123 4.123 8 C -0.090 4.090 9 C 0.037 3.963 10 O -0.260 6.260 11 C 0.367 3.633 12 O -0.377 6.377 13 C -0.160 4.160 14 C -0.256 4.256 15 Cl 0.059 6.941 16 S 0.500 5.500 17 C -0.360 4.360 18 C -0.149 4.149 19 O -0.335 6.335 20 Si 0.701 3.299 21 H -0.141 1.141 22 H -0.152 1.152 23 H -0.153 1.153 24 C -0.075 4.075 25 C -0.123 4.123 26 C -0.109 4.109 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.150 0.850 41 H 0.227 0.773 42 H 0.187 0.813 43 H 0.139 0.861 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.876 1.162 -1.314 4.255 hybrid contribution -1.941 -0.262 -0.261 1.976 sum 1.935 0.901 -1.575 2.652 Atomic orbital electron populations 1.26128 1.20454 1.04593 1.04510 0.78186 0.66843 0.66145 0.63692 1.26135 1.06510 1.18521 1.04573 1.26133 1.06519 1.08044 1.15047 1.27487 1.02922 0.99522 1.10228 1.21080 0.97477 0.94664 0.97710 1.21160 0.98695 0.99913 0.92535 1.19466 1.01019 0.94202 0.94341 1.21886 0.76176 1.01396 0.96796 1.86631 1.23184 1.71101 1.45085 1.20123 0.87627 0.75706 0.79801 1.90943 1.66120 1.42608 1.37980 1.19360 0.91613 1.07815 0.97238 1.25515 1.00321 1.03679 0.96108 1.98452 1.81419 1.76465 1.37767 1.83463 0.97375 1.51620 1.17501 1.24854 0.99918 1.09575 1.01611 1.24378 1.02321 1.01963 0.86255 1.86563 1.96240 1.25357 1.25308 0.86413 0.78221 0.83307 0.81910 1.14138 1.15171 1.15302 1.21111 0.90342 0.97537 0.98462 1.21162 0.98738 0.93522 0.98911 1.21080 0.97511 0.99763 0.92591 0.91164 0.91014 0.91163 0.91005 0.90935 0.91174 0.91169 0.90938 0.90998 0.85848 0.86081 0.90028 0.90029 0.85023 0.77284 0.81347 0.86086 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.70 8.65 101.05 0.87 1.58 16 2 Si 1.06 -2.74 12.32 -169.99 -2.09 -4.84 16 3 C -0.45 0.85 8.53 101.05 0.86 1.71 16 4 C -0.45 0.84 8.53 101.05 0.86 1.70 16 5 C -0.36 0.08 4.59 -39.59 -0.18 -0.10 16 6 C -0.09 -0.03 9.29 -39.58 -0.37 -0.40 16 7 C -0.10 -0.12 9.70 -39.58 -0.38 -0.50 16 8 C -0.09 -0.15 5.52 -104.62 -0.58 -0.72 16 9 C 0.11 0.19 5.60 36.01 0.20 0.39 16 10 O -0.34 -0.99 9.93 -40.79 -0.41 -1.40 16 11 C 0.53 1.99 7.92 34.23 0.27 2.26 16 12 O -0.49 -2.86 14.71 -19.33 -0.28 -3.14 16 13 C -0.14 -0.33 5.98 -104.60 -0.63 -0.95 16 14 C -0.11 -0.22 6.88 30.04 0.21 -0.01 16 15 Cl 0.03 0.09 27.20 -51.86 -1.41 -1.32 16 16 S 0.24 -0.08 20.17 -107.50 -2.17 -2.25 16 17 C -0.24 0.21 5.68 -36.20 -0.21 0.00 16 18 C -0.04 0.08 2.94 36.00 0.11 0.18 16 19 O -0.53 0.77 12.85 -35.23 -0.45 0.31 16 20 Si 0.88 -1.88 26.19 -169.99 -4.45 -6.33 16 21 H -0.22 0.25 7.11 56.52 0.40 0.65 16 22 H -0.23 0.39 7.11 56.52 0.40 0.79 16 23 H -0.23 0.47 7.11 56.52 0.40 0.87 16 24 C -0.05 -0.01 9.94 -38.99 -0.39 -0.40 16 25 C -0.11 -0.12 9.70 -39.58 -0.38 -0.50 16 26 C -0.09 -0.03 9.29 -39.58 -0.37 -0.40 16 27 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 28 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 29 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 30 H 0.07 -0.11 7.96 -51.92 -0.41 -0.52 16 31 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 32 H 0.07 -0.14 7.69 -51.93 -0.40 -0.54 16 33 H 0.07 -0.14 7.69 -51.93 -0.40 -0.54 16 34 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 35 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 36 H 0.12 -0.20 7.43 -52.49 -0.39 -0.59 16 37 H 0.12 -0.01 8.06 -52.49 -0.42 -0.43 16 38 H 0.08 0.11 8.08 -51.93 -0.42 -0.31 16 39 H 0.08 0.11 8.08 -51.93 -0.42 -0.31 16 40 H 0.13 -0.43 7.96 -51.93 -0.41 -0.84 16 41 H 0.38 -1.73 8.70 45.56 0.40 -1.34 16 42 H 0.17 -0.06 8.06 -52.49 -0.42 -0.49 16 43 H 0.12 -0.02 8.06 -52.48 -0.42 -0.44 16 44 H 0.12 -0.20 7.43 -52.48 -0.39 -0.59 16 LS Contribution 406.41 15.07 6.12 6.12 Total: 0.00 -6.18 406.41 -10.63 -16.82 By element: Atomic # 1 Polarization: -2.42 SS G_CDS: -5.39 Total: -7.82 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -0.10 Total: 3.84 kcal Atomic # 8 Polarization: -3.09 SS G_CDS: -1.14 Total: -4.23 kcal Atomic # 14 Polarization: -4.62 SS G_CDS: -6.55 Total: -11.16 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -2.17 Total: -2.25 kcal Atomic # 17 Polarization: 0.09 SS G_CDS: -1.41 Total: -1.32 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -6.18 -10.63 -16.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13431042_9435856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.232 kcal (2) G-P(sol) polarization free energy of solvation -6.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds