Wall clock time and date at job start Sat Mar 6 2021 04:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86307 * 1 3 3 C 1.86296 * 109.46944 * 2 1 4 4 C 1.86295 * 109.47200 * 239.99807 * 2 1 3 5 5 C 1.86800 * 109.46725 * 119.99960 * 2 1 3 6 6 C 1.38232 * 120.00098 * 90.00714 * 5 2 1 7 7 C 1.38235 * 120.00149 * 180.02562 * 6 5 2 8 8 C 1.38233 * 119.99903 * 359.97438 * 7 6 5 9 9 C 1.50706 * 120.00041 * 179.97438 * 8 7 6 10 10 O 1.45200 * 109.47233 * 90.00245 * 9 8 7 11 11 C 1.34811 * 117.00148 * 180.02562 * 10 9 8 12 12 O 1.21579 * 119.99962 * 359.97438 * 11 10 9 13 13 C 1.46884 * 120.00074 * 180.02562 * 11 10 9 14 14 C 1.36316 * 123.50724 * 179.97438 * 13 11 10 15 15 Cl 1.73605 * 124.61053 * 0.02562 * 14 13 11 16 16 S 1.70446 * 110.78003 * 180.02562 * 14 13 11 17 17 C 1.75489 * 92.47483 * 359.97438 * 16 14 13 18 18 C 1.50695 * 124.67233 * 179.97438 * 17 16 14 19 19 O 1.42898 * 109.46955 * 120.02901 * 18 17 16 20 20 Si 1.86300 * 109.47389 * 0.02810 * 18 17 16 21 21 H 1.48503 * 109.47262 * 179.97438 * 20 18 17 22 22 H 1.48500 * 109.46912 * 299.99977 * 20 18 17 23 23 H 1.48503 * 109.46942 * 59.99457 * 20 18 17 24 24 C 1.32660 * 110.65433 * 0.26454 * 17 16 14 25 25 C 1.38237 * 120.00067 * 0.25550 * 8 7 6 26 26 C 1.38233 * 119.99953 * 270.02096 * 5 2 1 27 27 H 1.09000 * 109.47074 * 300.00094 * 1 2 3 28 28 H 1.09001 * 109.46971 * 60.00100 * 1 2 3 29 29 H 1.09001 * 109.46807 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47410 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47700 * 299.99819 * 3 2 1 32 32 H 1.09000 * 109.47312 * 60.00051 * 3 2 1 33 33 H 1.08991 * 109.47620 * 300.00024 * 4 2 1 34 34 H 1.09001 * 109.47082 * 60.00161 * 4 2 1 35 35 H 1.09005 * 109.47015 * 180.02562 * 4 2 1 36 36 H 1.08001 * 120.00142 * 359.97438 * 6 5 2 37 37 H 1.08002 * 120.00226 * 179.97438 * 7 6 5 38 38 H 1.08994 * 109.47067 * 330.00146 * 9 8 7 39 39 H 1.09003 * 109.46899 * 210.00218 * 9 8 7 40 40 H 1.09001 * 109.47545 * 240.02444 * 18 17 16 41 41 H 0.96700 * 113.99995 * 299.99800 * 19 18 17 42 42 H 1.07999 * 123.45247 * 179.71197 * 24 17 16 43 43 H 1.08007 * 119.99849 * 179.72131 * 25 8 7 44 44 H 1.08006 * 120.00308 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4841 -0.8783 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7161 -2.2431 1.4910 7 6 3.1763 -2.8949 2.6199 8 6 3.4065 -2.1840 3.7828 9 6 3.9076 -2.8946 5.0137 10 8 5.3596 -2.8955 5.0146 11 6 5.9707 -3.4969 6.0550 12 8 5.3076 -4.0062 6.9377 13 6 7.4374 -3.5358 6.1228 14 6 8.1284 -4.1233 7.1404 15 17 7.3966 -4.9112 8.5033 16 16 9.8086 -3.9792 6.8927 17 6 9.5886 -3.1090 5.3847 18 6 10.7106 -2.6051 4.5141 19 8 10.6164 -3.2055 3.2208 20 14 12.3455 -3.0510 5.2881 21 1 13.4513 -2.5550 4.4298 22 1 12.4434 -2.4271 6.6321 23 1 12.4450 -4.5269 5.4191 24 6 8.2984 -2.9505 5.1200 25 6 3.1715 -0.8222 3.8185 26 6 2.7155 -0.1697 2.6883 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.5741 1.7565 0.0005 31 1 2.1207 2.2704 -0.8900 32 1 2.1207 2.2703 0.8900 33 1 2.1208 -1.9058 -1.5211 34 1 2.1208 -0.3644 -2.4111 35 1 3.5741 -0.8786 -1.5208 36 1 2.5359 -2.7987 0.5826 37 1 3.3560 -3.9595 2.5933 38 1 3.5437 -3.9220 5.0136 39 1 3.5441 -2.3804 5.9034 40 1 10.6376 -1.5218 4.4179 41 1 10.6739 -4.1707 3.2301 42 1 7.9290 -2.4384 4.2437 43 1 3.3471 -0.2675 4.7285 44 1 2.5349 0.8948 2.7153 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13431042_9435856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:51:54 Heat of formation + Delta-G solvation = -98.704164 kcal Electronic energy + Delta-G solvation = -27053.334447 eV Core-core repulsion = 23019.148151 eV Total energy + Delta-G solvation = -4034.186297 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 384.058 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.70751 -40.07019 -39.20902 -38.23308 -37.56066 -37.05284 -33.09337 -31.89304 -31.80131 -29.44177 -28.27289 -28.25759 -28.05474 -26.94866 -25.84918 -23.49398 -22.41976 -22.08436 -21.17401 -19.63308 -18.50100 -18.04905 -17.71425 -17.65765 -17.16687 -16.39278 -16.06436 -16.01684 -15.97368 -15.35071 -14.89019 -14.85243 -14.51298 -14.35672 -14.34985 -14.07169 -14.03466 -13.96798 -13.79895 -13.69815 -13.39273 -13.14265 -13.09194 -13.01302 -12.94678 -12.72818 -12.69732 -12.51071 -12.33695 -12.24897 -12.09953 -11.83600 -11.74015 -11.49702 -10.90909 -10.78058 -10.73881 -10.60672 -10.02826 -9.85090 -9.81400 -9.70522 -0.88532 -0.39126 0.07136 0.31301 0.48896 0.51529 0.83725 1.04807 1.40057 1.45688 1.65648 1.74386 1.85012 1.89889 2.04476 2.14988 2.67990 2.93903 3.22283 3.53700 3.63661 3.68804 3.75876 3.81391 4.09537 4.20546 4.22198 4.38164 4.52897 4.55830 4.70105 4.75410 4.86219 4.86378 4.90668 4.90802 4.91594 4.91925 4.92500 4.97739 5.12882 5.15296 5.39747 5.55997 5.58608 5.61090 5.69623 5.72888 6.10820 6.50322 6.63680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.128 2.872 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.371 4.371 6 C -0.101 4.101 7 C -0.119 4.119 8 C -0.104 4.104 9 C 0.110 3.890 10 O -0.343 6.343 11 C 0.524 3.476 12 O -0.516 6.516 13 C -0.156 4.156 14 C -0.126 4.126 15 Cl 0.014 6.986 16 S 0.270 5.730 17 C -0.230 4.230 18 C -0.032 4.032 19 O -0.542 6.542 20 Si 0.900 3.100 21 H -0.233 1.233 22 H -0.233 1.233 23 H -0.229 1.229 24 C -0.051 4.051 25 C -0.119 4.119 26 C -0.101 4.101 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.141 0.859 37 H 0.127 0.873 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.146 0.854 41 H 0.392 0.608 42 H 0.175 0.825 43 H 0.127 0.873 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.788 2.137 -3.912 5.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.315 2.685 3 C -0.569 4.569 4 C -0.570 4.570 5 C -0.410 4.410 6 C -0.119 4.119 7 C -0.137 4.137 8 C -0.104 4.104 9 C 0.037 3.963 10 O -0.260 6.260 11 C 0.368 3.632 12 O -0.407 6.407 13 C -0.174 4.174 14 C -0.273 4.273 15 Cl 0.043 6.957 16 S 0.536 5.464 17 C -0.348 4.348 18 C -0.145 4.145 19 O -0.349 6.349 20 Si 0.720 3.280 21 H -0.155 1.155 22 H -0.156 1.156 23 H -0.152 1.152 24 C -0.078 4.078 25 C -0.137 4.137 26 C -0.119 4.119 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.159 0.841 37 H 0.145 0.855 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.163 0.837 41 H 0.242 0.758 42 H 0.192 0.808 43 H 0.145 0.855 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.529 1.798 -2.453 5.455 hybrid contribution -2.098 -0.451 0.048 2.146 sum 2.431 1.347 -2.405 3.675 Atomic orbital electron populations 1.26299 1.21666 1.04453 1.04575 0.77159 0.65098 0.64667 0.61559 1.26275 1.06467 1.19303 1.04887 1.26276 1.06466 1.08481 1.15728 1.28097 1.02092 0.99586 1.11214 1.21394 0.97207 0.95211 0.98099 1.21368 0.99087 1.00437 0.92838 1.19527 1.01853 0.94615 0.94413 1.21942 0.75651 1.01499 0.97171 1.86632 1.23839 1.70798 1.44760 1.20442 0.88294 0.75072 0.79438 1.90919 1.66840 1.43953 1.38951 1.19460 0.91012 1.08785 0.98177 1.25732 1.01657 1.04095 0.95794 1.98439 1.81950 1.76810 1.38508 1.83352 0.95252 1.50598 1.17215 1.25067 0.99946 1.08436 1.01333 1.24468 1.01463 1.02748 0.85834 1.86542 1.96161 1.26724 1.25467 0.86163 0.77502 0.83105 0.81220 1.15514 1.15570 1.15220 1.21097 0.90419 0.97953 0.98357 1.21372 0.99105 0.93547 0.99714 1.21397 0.97223 1.00821 0.92468 0.91420 0.90652 0.91428 0.91232 0.90635 0.90907 0.90918 0.90636 0.91239 0.84080 0.85513 0.90073 0.90057 0.83681 0.75798 0.80801 0.85485 0.84060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.73 8.65 113.37 0.98 2.71 16 2 Si 1.13 -6.75 12.32 68.60 0.85 -5.91 16 3 C -0.46 2.15 8.53 113.37 0.97 3.12 16 4 C -0.46 2.12 8.53 113.37 0.97 3.09 16 5 C -0.37 0.27 4.59 22.27 0.10 0.37 16 6 C -0.10 -0.07 9.29 22.27 0.21 0.14 16 7 C -0.12 -0.37 9.70 22.27 0.22 -0.16 16 8 C -0.10 -0.46 5.52 -19.86 -0.11 -0.57 16 9 C 0.11 0.57 5.60 71.24 0.40 0.97 16 10 O -0.34 -2.50 9.93 -57.23 -0.57 -3.07 16 11 C 0.52 4.82 7.92 70.09 0.56 5.37 16 12 O -0.52 -7.09 14.71 19.58 0.29 -6.80 16 13 C -0.16 -0.85 5.98 -19.85 -0.12 -0.97 16 14 C -0.13 -0.59 6.88 67.37 0.46 -0.13 16 15 Cl 0.01 0.10 27.20 -2.72 -0.07 0.03 16 16 S 0.27 -0.29 20.17 -56.49 -1.14 -1.43 16 17 C -0.23 0.54 5.68 24.52 0.14 0.68 16 18 C -0.03 0.17 2.94 71.23 0.21 0.38 16 19 O -0.54 2.15 12.85 -148.98 -1.91 0.24 16 20 Si 0.90 -4.64 26.19 68.60 1.80 -2.85 16 21 H -0.23 0.63 7.11 99.48 0.71 1.34 16 22 H -0.23 1.02 7.11 99.48 0.71 1.73 16 23 H -0.23 1.20 7.11 99.48 0.71 1.91 16 24 C -0.05 -0.03 9.94 22.71 0.23 0.20 16 25 C -0.12 -0.36 9.70 22.27 0.22 -0.15 16 26 C -0.10 -0.06 9.29 22.27 0.21 0.15 16 27 H 0.07 -0.21 7.96 -2.39 -0.02 -0.22 16 28 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 29 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 30 H 0.07 -0.27 7.96 -2.38 -0.02 -0.29 16 31 H 0.07 -0.38 7.96 -2.38 -0.02 -0.39 16 32 H 0.07 -0.37 7.69 -2.39 -0.02 -0.38 16 33 H 0.07 -0.36 7.69 -2.39 -0.02 -0.38 16 34 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 35 H 0.07 -0.26 7.96 -2.38 -0.02 -0.28 16 36 H 0.14 -0.53 7.43 -2.91 -0.02 -0.55 16 37 H 0.13 0.11 8.06 -2.91 -0.02 0.09 16 38 H 0.08 0.38 8.08 -2.39 -0.02 0.36 16 39 H 0.08 0.38 8.08 -2.39 -0.02 0.36 16 40 H 0.15 -1.15 7.96 -2.39 -0.02 -1.17 16 41 H 0.39 -3.99 8.70 -74.06 -0.64 -4.63 16 42 H 0.17 -0.13 8.06 -2.91 -0.02 -0.15 16 43 H 0.13 0.10 8.06 -2.91 -0.02 0.07 16 44 H 0.14 -0.54 7.43 -2.91 -0.02 -0.56 16 Total: 0.00 -14.69 406.41 6.00 -8.69 By element: Atomic # 1 Polarization: -5.25 SS G_CDS: 1.14 Total: -4.11 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 5.63 Total: 15.21 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -2.19 Total: -9.64 kcal Atomic # 14 Polarization: -11.40 SS G_CDS: 2.64 Total: -8.76 kcal Atomic # 16 Polarization: -0.29 SS G_CDS: -1.14 Total: -1.43 kcal Atomic # 17 Polarization: 0.10 SS G_CDS: -0.07 Total: 0.03 kcal Total: -14.69 6.00 -8.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13431042_9435856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.012 kcal (2) G-P(sol) polarization free energy of solvation -14.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds