Wall clock time and date at job start Sat Mar 6 2021 04:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86300 * 109.46951 * 2 1 4 4 C 1.50701 * 109.47268 * 240.00480 * 2 1 3 5 5 C 1.37873 * 119.93214 * 254.98080 * 4 2 1 6 6 C 1.39676 * 119.85737 * 180.02562 * 5 4 2 7 7 C 1.47682 * 120.13418 * 180.02562 * 6 5 4 8 8 O 1.21476 * 120.00223 * 359.97136 * 7 6 5 9 9 O 1.34719 * 119.99838 * 179.97438 * 7 6 5 10 10 C 1.45201 * 116.99993 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.46782 * 179.97438 * 10 9 7 12 12 H 1.09000 * 112.85604 * 316.19587 * 11 10 9 13 13 C 1.53788 * 113.61442 * 87.50636 * 11 10 9 14 14 C 1.53782 * 87.08066 * 139.97597 * 13 11 10 15 15 H 1.09009 * 113.61303 * 89.11614 * 14 13 11 16 16 O 1.42898 * 113.68917 * 220.00320 * 14 13 11 17 17 C 1.53778 * 87.08404 * 334.56587 * 14 13 11 18 18 C 1.39639 * 119.72842 * 359.97438 * 6 5 4 19 19 C 1.37914 * 119.85325 * 0.02562 * 18 6 5 20 20 C 1.38465 * 120.14196 * 0.02562 * 19 18 6 21 21 Br 1.89103 * 119.85997 * 179.72383 * 20 19 18 22 22 H 0.96700 * 113.99732 * 59.99841 * 1 2 3 23 23 H 1.08996 * 109.47608 * 120.00078 * 2 1 3 24 24 H 1.48501 * 109.99725 * 60.00532 * 3 2 1 25 25 H 1.48497 * 110.00157 * 181.31783 * 3 2 1 26 26 H 1.07998 * 120.06511 * 0.02562 * 5 4 2 27 27 H 1.09000 * 109.47306 * 299.99528 * 10 9 7 28 28 H 1.08999 * 109.47020 * 60.00068 * 10 9 7 29 29 H 1.09001 * 113.60882 * 254.52595 * 13 11 10 30 30 H 1.08998 * 113.61421 * 25.42851 * 13 11 10 31 31 H 0.96699 * 114.00305 * 277.53388 * 16 14 13 32 32 H 1.08993 * 113.61769 * 270.88393 * 17 14 13 33 33 H 1.08995 * 113.68973 * 139.98680 * 17 14 13 34 34 H 1.07990 * 120.07688 * 179.97438 * 18 6 5 35 35 H 1.08004 * 119.93290 * 180.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 2.4526 -1.9824 -1.1259 6 6 2.9183 -2.6391 -2.2674 7 6 3.4773 -4.0020 -2.1625 8 8 3.5333 -4.5540 -1.0818 9 8 3.9252 -4.6330 -3.2652 10 6 4.4620 -5.9704 -3.0872 11 6 4.9165 -6.5217 -4.4402 12 1 4.2009 -6.3263 -5.2389 13 6 6.3639 -6.1490 -4.8025 14 6 6.5100 -7.5768 -5.3548 15 1 6.2311 -7.6696 -6.4045 16 8 7.7715 -8.1800 -5.0605 17 6 5.3907 -7.9834 -4.3818 18 6 2.8521 -2.0021 -3.5082 19 6 2.3285 -0.7295 -3.5995 20 6 1.8695 -0.0834 -2.4641 21 35 1.1602 1.6645 -2.5973 22 1 -0.3933 0.4417 -0.7650 23 1 1.7924 -0.5138 0.8899 24 1 1.5615 2.4678 1.2086 25 1 3.5345 1.7704 -0.0321 26 1 2.5007 -2.4700 -0.1635 27 1 5.3119 -5.9330 -2.4057 28 1 3.6910 -6.6190 -2.6714 29 1 6.4372 -5.3755 -5.5670 30 1 6.9935 -5.9498 -3.9354 31 1 8.4795 -7.9281 -5.6691 32 1 5.7543 -8.2856 -3.3998 33 1 4.6778 -8.6909 -4.8054 34 1 3.2109 -2.5044 -4.3943 35 1 2.2763 -0.2357 -4.5587 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13441022_11354868.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:15:03 Heat of formation + Delta-G solvation = -114.576945 kcal Electronic energy + Delta-G solvation = -21255.934304 eV Core-core repulsion = 17653.629825 eV Total energy + Delta-G solvation = -3602.304479 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.019 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.96705 -40.76723 -40.13420 -37.90902 -37.66093 -36.00553 -34.26038 -33.00936 -31.44254 -29.63921 -27.05020 -26.75708 -25.51320 -23.48741 -23.33369 -21.87538 -20.58019 -19.33625 -18.73616 -18.28014 -17.86823 -17.65050 -17.13811 -16.99567 -16.39827 -16.33516 -15.60403 -15.36402 -15.16636 -15.10846 -14.55278 -14.40525 -14.25830 -13.78769 -13.48726 -13.42208 -13.10314 -12.83182 -12.79568 -12.44426 -12.37828 -12.21787 -12.13351 -12.09078 -11.88870 -11.68954 -11.22990 -10.77518 -10.73293 -10.26917 -10.10356 -4.82284 -0.87386 -0.08690 -0.04098 0.99003 1.13974 1.32642 1.44774 1.88210 2.31156 3.15375 3.17894 3.36447 3.39362 3.44268 3.46424 3.56438 3.80259 3.84658 3.93509 3.94568 4.12861 4.14658 4.18501 4.29945 4.35717 4.59960 4.62604 4.74240 4.77056 4.78872 4.82906 4.94931 4.98327 5.10158 5.15740 5.35669 5.38445 6.42635 6.44200 6.88356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.062 4.062 3 Si 0.584 3.416 4 C -0.101 4.101 5 C -0.045 4.045 6 C -0.116 4.116 7 C 0.510 3.490 8 O -0.534 6.534 9 O -0.340 6.340 10 C 0.076 3.924 11 C -0.100 4.100 12 H 0.124 0.876 13 C -0.162 4.162 14 C 0.075 3.925 15 H 0.105 0.895 16 O -0.584 6.584 17 C -0.127 4.127 18 C -0.041 4.041 19 C -0.078 4.078 20 C -0.070 4.070 21 Br 0.102 6.898 22 H 0.385 0.615 23 H 0.111 0.889 24 H -0.267 1.267 25 H -0.274 1.274 26 H 0.138 0.862 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.396 0.604 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.179 0.821 35 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.407 1.693 -10.221 10.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.173 4.173 3 Si 0.486 3.514 4 C -0.104 4.104 5 C -0.065 4.065 6 C -0.118 4.118 7 C 0.356 3.644 8 O -0.425 6.425 9 O -0.256 6.256 10 C 0.003 3.997 11 C -0.118 4.118 12 H 0.142 0.858 13 C -0.200 4.200 14 C 0.016 3.984 15 H 0.123 0.877 16 O -0.393 6.393 17 C -0.164 4.164 18 C -0.060 4.060 19 C -0.098 4.098 20 C -0.150 4.150 21 Br 0.188 6.812 22 H 0.235 0.765 23 H 0.129 0.871 24 H -0.193 1.193 25 H -0.199 1.199 26 H 0.155 0.845 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.246 0.754 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.196 0.804 35 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -0.410 2.174 -8.519 8.802 hybrid contribution 0.753 -0.970 0.779 1.454 sum 0.343 1.204 -7.741 7.841 Atomic orbital electron populations 1.86534 1.16507 1.81653 1.50188 1.24871 0.85490 1.09862 0.97051 0.93170 0.81759 0.80325 0.96191 1.20055 1.00418 0.94932 0.94954 1.21098 0.93912 0.92630 0.98830 1.19305 1.04692 0.91622 0.96142 1.21333 0.74512 0.86606 0.81993 1.90871 1.53879 1.67757 1.30028 1.86499 1.71780 1.31867 1.35461 1.23261 0.98476 0.78976 0.99006 1.22362 0.97614 0.95825 0.96042 0.85752 1.23758 0.95592 0.98495 1.02175 1.23418 0.83947 0.92089 0.98929 0.87693 1.86488 1.20787 1.72802 1.59213 1.23115 0.97071 0.95592 1.00661 1.21849 0.93498 0.93723 0.96929 1.21531 0.95514 0.94203 0.98504 1.22139 1.03788 0.92797 0.96229 1.96356 1.82689 1.15565 1.86592 0.76492 0.87095 1.19267 1.19941 0.84464 0.91602 0.90790 0.89371 0.90505 0.75407 0.90219 0.88987 0.80415 0.79625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -2.17 12.88 -148.98 -1.92 -4.09 16 2 C -0.06 -0.22 2.79 71.24 0.20 -0.02 16 3 Si 0.58 2.54 26.91 68.60 1.85 4.39 16 4 C -0.10 -0.13 4.78 -19.88 -0.09 -0.22 16 5 C -0.05 -0.15 9.21 22.53 0.21 0.06 16 6 C -0.12 -0.14 5.87 -20.10 -0.12 -0.26 16 7 C 0.51 2.66 7.90 70.32 0.56 3.21 16 8 O -0.53 -6.51 16.14 19.91 0.32 -6.18 16 9 O -0.34 -0.43 9.47 -56.29 -0.53 -0.96 16 10 C 0.08 0.03 5.31 71.98 0.38 0.41 16 11 C -0.10 0.41 4.02 -10.26 -0.04 0.37 16 12 H 0.12 -0.88 8.14 -2.39 -0.02 -0.90 16 13 C -0.16 0.62 7.47 31.12 0.23 0.86 16 14 C 0.07 -0.26 5.21 31.12 0.16 -0.10 16 15 H 0.11 -0.78 8.14 -2.38 -0.02 -0.80 16 16 O -0.58 -0.17 13.67 -148.98 -2.04 -2.21 16 17 C -0.13 0.34 7.47 31.12 0.23 0.57 16 18 C -0.04 0.23 9.62 22.53 0.22 0.45 16 19 C -0.08 0.61 9.77 22.25 0.22 0.82 16 20 C -0.07 0.26 5.79 22.39 0.13 0.39 16 21 Br 0.10 -0.67 26.02 -20.37 -0.53 -1.20 16 22 H 0.39 -1.06 7.31 -74.06 -0.54 -1.60 16 23 H 0.11 0.50 7.77 -2.39 -0.02 0.48 16 24 H -0.27 -2.97 7.11 99.48 0.71 -2.27 16 25 H -0.27 -2.69 7.11 99.48 0.71 -1.98 16 26 H 0.14 0.69 7.59 -2.91 -0.02 0.67 16 27 H 0.07 0.16 7.84 -2.39 -0.02 0.15 16 28 H 0.07 0.07 8.14 -2.39 -0.02 0.06 16 29 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 30 H 0.08 -0.05 7.90 -2.39 -0.02 -0.07 16 31 H 0.40 -3.15 9.12 -74.06 -0.68 -3.82 16 32 H 0.08 0.03 8.10 -2.39 -0.02 0.01 16 33 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 34 H 0.18 -1.88 7.61 -2.92 -0.02 -1.90 16 35 H 0.19 -2.70 8.06 -2.91 -0.02 -2.72 16 Total: 0.00 -18.83 316.50 -0.62 -19.45 By element: Atomic # 1 Polarization: -15.69 SS G_CDS: -0.04 Total: -15.74 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 2.28 Total: 6.55 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -4.17 Total: -13.44 kcal Atomic # 14 Polarization: 2.54 SS G_CDS: 1.85 Total: 4.39 kcal Atomic # 35 Polarization: -0.67 SS G_CDS: -0.53 Total: -1.20 kcal Total: -18.83 -0.62 -19.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13441022_11354868.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.131 kcal (2) G-P(sol) polarization free energy of solvation -18.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds