Wall clock time and date at job start Sat Mar 6 2021 03:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47340 * 2 1 4 4 C 1.52996 * 109.47275 * 239.99617 * 2 1 3 5 5 O 1.42907 * 109.46987 * 119.99724 * 2 1 3 6 6 C 1.42896 * 113.99942 * 60.00108 * 5 2 1 7 7 H 1.09006 * 112.90579 * 341.25377 * 6 5 2 8 8 C 1.53781 * 113.61620 * 112.49945 * 6 5 2 9 9 C 1.53782 * 87.08106 * 139.98204 * 8 6 5 10 10 H 1.09004 * 113.69323 * 89.13018 * 9 8 6 11 11 C 1.53004 * 113.61623 * 220.02361 * 9 8 6 12 12 O 1.45205 * 109.46922 * 272.49848 * 11 9 8 13 13 C 1.34712 * 116.99868 * 180.02562 * 12 11 9 14 14 O 1.21481 * 120.00192 * 359.97438 * 13 12 11 15 15 C 1.47678 * 119.99954 * 179.97438 * 13 12 11 16 16 C 1.39640 * 120.13828 * 179.97438 * 15 13 12 17 17 C 1.37914 * 119.85963 * 180.02562 * 16 15 13 18 18 C 1.50700 * 119.93315 * 180.02562 * 17 16 15 19 19 O 1.42900 * 109.46715 * 16.31985 * 18 17 16 20 20 Si 1.86296 * 109.47156 * 256.32036 * 18 17 16 21 21 C 1.38466 * 120.13753 * 359.97438 * 17 16 15 22 22 Br 1.89101 * 119.86040 * 180.27526 * 21 17 16 23 23 C 1.38508 * 120.28140 * 359.97438 * 21 17 16 24 24 C 1.37871 * 120.14257 * 359.97438 * 23 21 17 25 25 C 1.53781 * 113.61562 * 210.00230 * 6 5 2 26 26 H 1.08992 * 109.47534 * 300.00521 * 1 2 3 27 27 H 1.09003 * 109.47032 * 60.00568 * 1 2 3 28 28 H 1.09001 * 109.47117 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47149 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46984 * 300.00051 * 3 2 1 31 31 H 1.09001 * 109.47405 * 59.99344 * 3 2 1 32 32 H 1.09001 * 109.47444 * 300.00285 * 4 2 1 33 33 H 1.09006 * 109.47373 * 60.00454 * 4 2 1 34 34 H 1.09007 * 109.47269 * 179.97438 * 4 2 1 35 35 H 1.08997 * 113.60926 * 25.43713 * 8 6 5 36 36 H 1.08998 * 113.61685 * 254.53240 * 8 6 5 37 37 H 1.08999 * 109.47158 * 152.49685 * 11 9 8 38 38 H 1.08999 * 109.46732 * 32.49323 * 11 9 8 39 39 H 1.08000 * 120.07048 * 0.04234 * 16 15 13 40 40 H 1.09001 * 109.47016 * 136.31630 * 18 17 16 41 41 H 0.96705 * 113.99603 * 180.02562 * 19 18 17 42 42 H 1.48505 * 110.00081 * 305.38072 * 20 18 17 43 43 H 1.48498 * 110.00182 * 66.69855 * 20 18 17 44 44 H 1.08003 * 119.92908 * 180.02562 * 23 21 17 45 45 H 1.08004 * 120.07129 * 179.97438 * 24 23 21 46 46 H 1.08997 * 113.61435 * 105.46896 * 25 6 5 47 47 H 1.08996 * 113.68808 * 334.57335 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0063 -0.6736 1.1669 6 6 1.5846 -2.0355 1.2646 7 1 0.7241 -2.2595 0.6341 8 6 2.7333 -3.0478 1.1214 9 6 2.0561 -3.8557 2.2411 10 1 1.3243 -4.5779 1.8790 11 6 3.0418 -4.4601 3.2431 12 8 3.4833 -5.7581 2.7648 13 6 4.3600 -6.4287 3.5371 14 8 4.7455 -5.9422 4.5813 15 6 4.8524 -7.7552 3.1143 16 6 5.7616 -8.4526 3.9123 17 6 6.2181 -9.6907 3.5117 18 6 7.1990 -10.4451 4.3720 19 8 7.2122 -9.8817 5.6852 20 14 8.9017 -10.3221 3.6263 21 6 5.7764 -10.2428 2.3212 22 35 6.4014 -11.9445 1.7832 23 6 4.8737 -9.5565 1.5256 24 6 4.4090 -8.3185 1.9155 25 6 1.4331 -2.5310 2.7125 26 1 -0.3634 0.5139 0.8898 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 -1.7490 -1.2492 33 1 1.6767 -0.2075 -2.1393 34 1 3.1300 -0.7209 -1.2494 35 1 3.7070 -2.6456 1.4010 36 1 2.7462 -3.5605 0.1596 37 1 2.5518 -4.5765 4.2097 38 1 3.9027 -3.8000 3.3491 39 1 6.1064 -8.0233 4.8415 40 1 6.9019 -11.4923 4.4288 41 1 7.8231 -10.3185 6.2944 42 1 8.8730 -10.7847 2.2154 43 1 9.3844 -8.9192 3.6909 44 1 4.5326 -9.9926 0.5983 45 1 3.7055 -7.7842 1.2941 46 1 0.3963 -2.6265 3.0350 47 1 2.0507 -1.9883 3.4280 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13441022_14598394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:38:25 Heat of formation + Delta-G solvation = -104.346095 kcal Electronic energy + Delta-G solvation = -28693.195110 eV Core-core repulsion = 24469.183798 eV Total energy + Delta-G solvation = -4224.011312 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 399.081 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.98274 -40.97103 -40.42645 -38.61176 -37.74233 -37.43577 -34.21671 -33.89969 -32.85177 -31.14484 -29.75945 -28.36523 -28.33385 -27.11645 -26.67105 -25.47589 -23.60440 -23.14051 -21.90008 -20.89268 -20.62529 -19.01225 -18.72375 -18.24699 -17.75085 -17.63754 -17.09108 -16.59002 -16.57752 -16.14032 -16.06090 -15.90712 -15.67237 -15.10422 -14.95180 -14.64325 -14.41041 -14.33647 -14.25587 -14.00991 -13.51007 -13.39290 -13.34856 -13.25471 -13.01606 -12.90977 -12.82229 -12.72816 -12.66886 -12.48188 -12.45590 -12.24914 -12.01512 -11.88772 -11.77077 -11.61592 -11.37673 -11.29064 -11.21025 -11.01141 -10.38528 -10.19019 -9.77216 -5.10254 -0.87718 -0.10706 0.22213 1.02081 1.26405 1.32144 1.60025 1.94987 2.31732 2.69616 2.97697 3.25000 3.35008 3.44045 3.51818 3.61905 3.73097 3.76902 3.88028 3.90219 3.96142 4.05060 4.06011 4.09564 4.12718 4.14546 4.25453 4.36819 4.45467 4.61409 4.61846 4.65554 4.72306 4.74396 4.74746 4.77041 4.82267 4.85639 4.89791 4.92503 4.93350 4.98365 5.09161 5.10045 5.17144 5.29478 5.31984 5.32867 5.37182 6.40047 6.42382 6.77657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.097 3.903 3 C -0.140 4.140 4 C -0.173 4.173 5 O -0.383 6.383 6 C 0.061 3.939 7 H 0.107 0.893 8 C -0.149 4.149 9 C -0.100 4.100 10 H 0.122 0.878 11 C 0.077 3.923 12 O -0.342 6.342 13 C 0.511 3.489 14 O -0.532 6.532 15 C -0.124 4.124 16 C -0.045 4.045 17 C -0.077 4.077 18 C -0.078 4.078 19 O -0.562 6.562 20 Si 0.757 3.243 21 C -0.074 4.074 22 Br -0.018 7.018 23 C -0.093 4.093 24 C -0.049 4.049 25 C -0.126 4.126 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.139 0.861 40 H 0.106 0.894 41 H 0.409 0.591 42 H -0.250 1.250 43 H -0.306 1.306 44 H 0.174 0.826 45 H 0.174 0.826 46 H 0.092 0.908 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.780 -3.342 -3.572 5.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.059 3.941 3 C -0.198 4.198 4 C -0.231 4.231 5 O -0.303 6.303 6 C 0.004 3.996 7 H 0.124 0.876 8 C -0.187 4.187 9 C -0.118 4.118 10 H 0.140 0.860 11 C 0.004 3.996 12 O -0.258 6.258 13 C 0.357 3.643 14 O -0.423 6.423 15 C -0.126 4.126 16 C -0.064 4.064 17 C -0.079 4.079 18 C -0.186 4.186 19 O -0.372 6.372 20 Si 0.659 3.341 21 C -0.154 4.154 22 Br 0.069 6.931 23 C -0.113 4.113 24 C -0.068 4.068 25 C -0.164 4.164 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.157 0.843 40 H 0.124 0.876 41 H 0.261 0.739 42 H -0.174 1.174 43 H -0.234 1.234 44 H 0.191 0.809 45 H 0.192 0.808 46 H 0.110 0.890 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.298 -2.980 -4.231 5.335 hybrid contribution -0.576 0.807 0.453 1.090 sum -1.874 -2.173 -3.778 4.744 Atomic orbital electron populations 1.22445 0.94782 1.02911 1.03236 1.21686 0.93820 0.93241 0.85370 1.21801 1.01534 0.93415 1.03002 1.22443 1.01709 1.01102 0.97828 1.88023 1.74284 1.24277 1.43741 1.23667 0.97306 0.81178 0.97495 0.87576 1.23611 0.98903 0.96732 0.99442 1.22343 0.97577 0.96004 0.95882 0.86046 1.23269 0.97951 0.79887 0.98516 1.86504 1.56190 1.33359 1.49753 1.21270 0.76211 0.85541 0.81323 1.90862 1.57059 1.69251 1.25141 1.19332 1.02058 0.92637 0.98548 1.21044 0.93620 0.92828 0.98930 1.19383 0.97941 0.95427 0.95157 1.24943 1.07153 0.98815 0.87728 1.86375 1.68758 1.61386 1.20729 0.94960 0.75517 0.81121 0.82548 1.22130 1.01431 0.94631 0.97172 1.96789 1.87161 1.18946 1.90235 1.21456 0.95112 0.94211 1.00476 1.21773 0.97065 0.94305 0.93630 1.23230 1.02428 0.93828 0.96879 0.92245 0.90400 0.91586 0.92576 0.89676 0.92358 0.91791 0.90554 0.92614 0.90560 0.90022 0.90634 0.91549 0.84274 0.87617 0.73910 1.17389 1.23447 0.80855 0.80846 0.88993 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.36 8.38 71.98 0.60 0.96 16 2 C 0.10 0.04 1.11 -10.80 -0.01 0.03 16 3 C -0.14 -0.02 8.84 71.98 0.64 0.62 16 4 C -0.17 0.25 8.38 71.98 0.60 0.85 16 5 O -0.38 -1.59 10.00 -148.98 -1.49 -3.08 16 6 C 0.06 -0.02 2.82 31.12 0.09 0.06 16 7 H 0.11 -0.35 5.55 -2.38 -0.01 -0.37 16 8 C -0.15 0.06 7.46 31.12 0.23 0.29 16 9 C -0.10 0.16 4.02 -10.26 -0.04 0.12 16 10 H 0.12 -0.53 8.14 -2.39 -0.02 -0.55 16 11 C 0.08 0.22 5.31 71.98 0.38 0.60 16 12 O -0.34 -1.65 9.47 -56.22 -0.53 -2.18 16 13 C 0.51 4.71 7.90 70.32 0.56 5.27 16 14 O -0.53 -8.32 16.14 19.90 0.32 -8.00 16 15 C -0.12 -0.79 5.87 -20.10 -0.12 -0.90 16 16 C -0.05 -0.37 8.91 22.53 0.20 -0.17 16 17 C -0.08 -0.37 4.49 -19.89 -0.09 -0.46 16 18 C -0.08 -0.03 2.42 71.24 0.17 0.14 16 19 O -0.56 -0.42 11.50 -148.98 -1.71 -2.13 16 20 Si 0.76 -0.51 31.34 68.60 2.15 1.64 16 21 C -0.07 -0.17 5.96 22.39 0.13 -0.03 16 22 Br -0.02 0.00 29.85 -20.37 -0.61 -0.61 16 23 C -0.09 0.08 9.77 22.25 0.22 0.29 16 24 C -0.05 -0.01 9.62 22.53 0.22 0.20 16 25 C -0.13 0.15 7.47 31.12 0.23 0.39 16 26 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 27 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 28 H 0.07 -0.23 6.25 -2.39 -0.01 -0.24 16 29 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 31 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.06 -0.16 7.02 -2.39 -0.02 -0.18 16 33 H 0.08 -0.26 8.14 -2.38 -0.02 -0.28 16 34 H 0.05 0.03 8.14 -2.38 -0.02 0.01 16 35 H 0.08 0.22 7.90 -2.39 -0.02 0.20 16 36 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 37 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.07 0.32 7.84 -2.39 -0.02 0.31 16 39 H 0.14 1.58 6.74 -2.91 -0.02 1.56 16 40 H 0.11 -0.34 7.13 -2.39 -0.02 -0.36 16 41 H 0.41 -4.00 8.74 -74.05 -0.65 -4.65 16 42 H -0.25 -0.54 6.33 99.48 0.63 0.09 16 43 H -0.31 -2.62 7.11 99.48 0.71 -1.91 16 44 H 0.17 -1.09 8.06 -2.91 -0.02 -1.12 16 45 H 0.17 -0.82 7.61 -2.91 -0.02 -0.84 16 46 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 47 H 0.08 0.10 8.10 -2.39 -0.02 0.08 16 Total: 0.00 -17.64 400.96 2.43 -15.21 By element: Atomic # 1 Polarization: -9.40 SS G_CDS: 0.29 Total: -9.11 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 4.01 Total: 8.26 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -3.41 Total: -15.40 kcal Atomic # 14 Polarization: -0.51 SS G_CDS: 2.15 Total: 1.64 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -0.61 Total: -0.61 kcal Total: -17.64 2.43 -15.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13441022_14598394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.137 kcal (2) G-P(sol) polarization free energy of solvation -17.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds