Wall clock time and date at job start Sat Mar 6 2021 05:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86302 * 109.46684 * 2 1 4 4 C 1.86295 * 109.47087 * 240.00053 * 2 1 3 5 5 C 1.86298 * 109.47201 * 119.99877 * 2 1 3 6 6 O 1.45201 * 109.46923 * 60.00276 * 5 2 1 7 7 C 1.34718 * 117.00263 * 75.00054 * 6 5 2 8 8 O 1.21479 * 119.99481 * 359.97438 * 7 6 5 9 9 C 1.47680 * 119.99886 * 179.97438 * 7 6 5 10 10 C 1.39640 * 120.13963 * 0.02562 * 9 7 6 11 11 C 1.37913 * 119.85534 * 180.02562 * 10 9 7 12 12 C 1.38464 * 120.14153 * 359.97438 * 11 10 9 13 13 Br 1.89100 * 119.85916 * 180.02562 * 12 11 10 14 14 C 1.38509 * 120.28136 * 0.02562 * 12 11 10 15 15 C 1.50700 * 119.93090 * 179.97438 * 14 12 11 16 16 O 1.42896 * 109.47204 * 75.59186 * 15 14 12 17 17 Si 1.86302 * 109.47355 * 195.59627 * 15 14 12 18 18 H 1.48498 * 109.47130 * 54.27403 * 17 15 14 19 19 H 1.48506 * 109.46642 * 294.27701 * 17 15 14 20 20 H 1.48492 * 109.47260 * 174.27628 * 17 15 14 21 21 C 1.37878 * 120.14138 * 0.25259 * 14 12 11 22 22 H 1.09005 * 109.47143 * 299.99690 * 1 2 3 23 23 H 1.09000 * 109.47260 * 59.99838 * 1 2 3 24 24 H 1.08999 * 109.46936 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46829 * 179.97438 * 3 2 1 26 26 H 1.08994 * 109.47083 * 299.99755 * 3 2 1 27 27 H 1.09002 * 109.47494 * 60.00551 * 3 2 1 28 28 H 1.09001 * 109.47229 * 299.99946 * 4 2 1 29 29 H 1.09008 * 109.47244 * 59.99802 * 4 2 1 30 30 H 1.09003 * 109.47359 * 179.97438 * 4 2 1 31 31 H 1.08998 * 109.47100 * 300.00396 * 5 2 1 32 32 H 1.08994 * 109.47035 * 179.97438 * 5 2 1 33 33 H 1.08000 * 120.07145 * 359.97091 * 10 9 7 34 34 H 1.08003 * 119.92943 * 179.97438 * 11 10 9 35 35 H 1.09009 * 109.46824 * 315.59361 * 15 14 12 36 36 H 0.96699 * 114.00141 * 60.00665 * 16 15 14 37 37 H 1.08000 * 120.06933 * 179.72431 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4840 -0.8782 1.5211 6 8 2.0001 -2.2472 1.5211 7 6 2.5965 -3.1067 0.6723 8 8 3.4959 -2.7229 -0.0483 9 6 2.1567 -4.5155 0.6181 10 6 1.1228 -4.9596 1.4449 11 6 0.7172 -6.2766 1.3898 12 6 1.3325 -7.1577 0.5168 13 35 0.7695 -8.9616 0.4473 14 6 2.3587 -6.7234 -0.3059 15 6 3.0233 -7.6892 -1.2528 16 8 2.1621 -7.9330 -2.3667 17 14 4.6287 -6.9618 -1.8564 18 1 5.4680 -6.5804 -0.6923 19 1 4.3481 -5.7582 -2.6799 20 1 5.3495 -7.9668 -2.6782 21 6 2.7773 -5.4106 -0.2564 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.5740 1.7565 0.0005 26 1 2.1206 2.2703 -0.8900 27 1 2.1206 2.2704 0.8900 28 1 2.1207 -1.9059 -1.5211 29 1 2.1206 -0.3643 -2.4112 30 1 3.5740 -0.8778 -1.5214 31 1 2.1207 -0.3644 2.4111 32 1 3.5740 -0.8786 1.5209 33 1 0.6423 -4.2734 2.1266 34 1 -0.0822 -6.6214 2.0290 35 1 3.2217 -8.6275 -0.7346 36 1 1.9429 -7.1403 -2.8752 37 1 3.5806 -5.0743 -0.8952 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_13441022_4858416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:00:06 Heat of formation + Delta-G solvation = -117.874154 kcal Electronic energy + Delta-G solvation = -20530.823805 eV Core-core repulsion = 17250.615578 eV Total energy + Delta-G solvation = -3280.208227 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 346.019 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.81271 -40.46176 -37.74548 -37.40078 -33.83163 -33.00166 -30.92643 -29.74623 -28.54465 -28.41709 -28.21377 -26.91831 -24.93604 -23.26760 -21.79007 -19.26326 -18.43150 -17.74987 -17.47604 -17.17130 -16.71954 -16.41481 -15.92052 -15.13833 -15.01733 -14.69827 -14.61540 -14.28595 -14.05915 -14.01137 -13.85306 -13.48455 -13.37969 -13.31362 -13.13361 -13.10565 -12.90764 -12.59964 -12.42392 -12.23963 -11.93708 -11.88054 -11.59914 -11.14042 -10.97425 -10.83249 -10.54882 -10.48434 -10.32833 -9.96274 -0.74596 -0.11069 0.45848 1.01810 1.22161 1.36349 1.38827 1.44980 1.47576 1.77366 1.85660 1.91397 2.35355 2.46838 3.22383 3.40299 3.50134 3.58462 3.87580 3.94832 4.11760 4.16726 4.37677 4.51659 4.56995 4.61582 4.63424 4.68060 4.69664 4.75941 4.82735 4.86432 4.88509 4.89716 5.25592 5.32016 5.37878 5.45680 5.66844 6.44823 6.64784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 0.998 3.002 3 C -0.446 4.446 4 C -0.438 4.438 5 C -0.238 4.238 6 O -0.330 6.330 7 C 0.492 3.508 8 O -0.484 6.484 9 C -0.105 4.105 10 C -0.052 4.052 11 C -0.102 4.102 12 C -0.036 4.036 13 Br -0.021 7.021 14 C -0.105 4.105 15 C -0.084 4.084 16 O -0.524 6.524 17 Si 0.938 3.062 18 H -0.246 1.246 19 H -0.244 1.244 20 H -0.245 1.245 21 C -0.059 4.059 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.082 0.918 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.126 0.874 36 H 0.376 0.624 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.380 2.025 1.531 2.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.554 4.554 2 Si 1.194 2.806 3 C -0.554 4.554 4 C -0.546 4.546 5 C -0.357 4.357 6 O -0.246 6.246 7 C 0.336 3.664 8 O -0.373 6.373 9 C -0.107 4.107 10 C -0.071 4.071 11 C -0.122 4.122 12 C -0.116 4.116 13 Br 0.066 6.934 14 C -0.107 4.107 15 C -0.195 4.195 16 O -0.328 6.328 17 Si 0.759 3.241 18 H -0.169 1.169 19 H -0.168 1.168 20 H -0.168 1.168 21 C -0.077 4.077 22 H 0.090 0.910 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.131 0.869 32 H 0.101 0.899 33 H 0.170 0.830 34 H 0.165 0.835 35 H 0.143 0.857 36 H 0.223 0.777 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.484 1.197 1.275 1.815 hybrid contribution -0.221 0.920 0.217 0.971 sum -0.704 2.117 1.492 2.684 Atomic orbital electron populations 1.26061 1.19944 1.04718 1.04668 0.79729 0.67766 0.67215 0.65934 1.26037 1.06524 1.17976 1.04907 1.26253 1.07079 1.07243 1.13999 1.28409 1.05453 0.83475 1.18345 1.86451 1.58853 1.21389 1.57866 1.21040 0.80628 0.86616 0.78092 1.90860 1.28424 1.77928 1.40073 1.19129 0.99947 0.90625 1.00955 1.21586 0.93761 0.95591 0.96151 1.21251 1.00169 0.92603 0.98160 1.22132 0.97830 0.93060 0.98582 1.96845 1.89045 1.09440 1.98078 1.20201 0.97072 0.94704 0.98746 1.25083 1.02692 1.02971 0.88766 1.86599 1.68953 1.36599 1.40668 0.85848 0.76162 0.80264 0.81859 1.16888 1.16778 1.16815 1.21175 0.98391 0.91470 0.96694 0.91015 0.90909 0.91068 0.90939 0.90594 0.91005 0.91612 0.91758 0.90368 0.86949 0.89914 0.83033 0.83506 0.85664 0.77692 0.83678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.63 8.65 101.05 0.87 1.50 16 2 Si 1.00 -1.90 12.12 -169.99 -2.06 -3.96 16 3 C -0.45 0.79 8.65 101.05 0.87 1.66 16 4 C -0.44 -0.23 7.10 101.05 0.72 0.49 16 5 C -0.24 0.24 5.40 101.05 0.55 0.79 16 6 O -0.33 -0.18 9.17 -40.54 -0.37 -0.56 16 7 C 0.49 0.83 6.68 34.59 0.23 1.06 16 8 O -0.48 -1.61 12.05 -19.25 -0.23 -1.84 16 9 C -0.10 -0.07 5.87 -104.98 -0.62 -0.69 16 10 C -0.05 0.05 9.62 -39.18 -0.38 -0.33 16 11 C -0.10 0.10 9.77 -39.62 -0.39 -0.28 16 12 C -0.04 -0.01 6.23 -39.40 -0.25 -0.25 16 13 Br -0.02 -0.01 31.96 -68.01 -2.17 -2.19 16 14 C -0.10 -0.02 5.25 -104.65 -0.55 -0.57 16 15 C -0.08 0.03 2.02 36.01 0.07 0.10 16 16 O -0.52 0.08 12.72 -35.23 -0.45 -0.37 16 17 Si 0.94 -0.23 25.31 -169.99 -4.30 -4.53 16 18 H -0.25 -0.15 7.11 56.52 0.40 0.25 16 19 H -0.24 0.02 6.97 56.52 0.39 0.41 16 20 H -0.24 -0.20 7.11 56.52 0.40 0.20 16 21 C -0.06 -0.03 8.20 -39.18 -0.32 -0.36 16 22 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 23 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 24 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 25 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 26 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 27 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 28 H 0.06 0.10 6.28 -51.93 -0.33 -0.22 16 29 H 0.06 0.00 7.96 -51.92 -0.41 -0.42 16 30 H 0.08 0.12 7.42 -51.93 -0.39 -0.26 16 31 H 0.11 -0.33 7.96 -51.93 -0.41 -0.75 16 32 H 0.08 -0.05 7.52 -51.93 -0.39 -0.44 16 33 H 0.15 -0.42 7.61 -52.49 -0.40 -0.82 16 34 H 0.15 -0.41 8.06 -52.48 -0.42 -0.83 16 35 H 0.13 -0.08 7.18 -51.92 -0.37 -0.45 16 36 H 0.38 -1.23 8.70 45.56 0.40 -0.84 16 37 H 0.15 0.06 4.63 -52.49 -0.24 -0.18 16 LS Contribution 329.05 15.07 4.96 4.96 Total: 0.00 -4.83 329.05 -8.07 -12.89 By element: Atomic # 1 Polarization: -3.27 SS G_CDS: -4.25 Total: -7.53 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 0.82 Total: 3.12 kcal Atomic # 8 Polarization: -1.71 SS G_CDS: -1.05 Total: -2.76 kcal Atomic # 14 Polarization: -2.13 SS G_CDS: -6.36 Total: -8.50 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -2.17 Total: -2.19 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -4.83 -8.07 -12.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13441022_4858416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.982 kcal (2) G-P(sol) polarization free energy of solvation -4.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds