Wall clock time and date at job start Sat Mar 6 2021 05:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86302 * 109.46684 * 2 1 4 4 C 1.86295 * 109.47087 * 240.00053 * 2 1 3 5 5 C 1.86298 * 109.47201 * 119.99877 * 2 1 3 6 6 O 1.45201 * 109.46923 * 60.00276 * 5 2 1 7 7 C 1.34718 * 117.00263 * 75.00054 * 6 5 2 8 8 O 1.21479 * 119.99481 * 359.97438 * 7 6 5 9 9 C 1.47680 * 119.99886 * 179.97438 * 7 6 5 10 10 C 1.39640 * 120.13963 * 0.02562 * 9 7 6 11 11 C 1.37913 * 119.85534 * 180.02562 * 10 9 7 12 12 C 1.38464 * 120.14153 * 359.97438 * 11 10 9 13 13 Br 1.89100 * 119.85916 * 180.02562 * 12 11 10 14 14 C 1.38509 * 120.28136 * 0.02562 * 12 11 10 15 15 C 1.50700 * 119.93090 * 179.97438 * 14 12 11 16 16 O 1.42896 * 109.47204 * 75.59186 * 15 14 12 17 17 Si 1.86302 * 109.47355 * 195.59627 * 15 14 12 18 18 H 1.48498 * 109.47130 * 54.27403 * 17 15 14 19 19 H 1.48506 * 109.46642 * 294.27701 * 17 15 14 20 20 H 1.48492 * 109.47260 * 174.27628 * 17 15 14 21 21 C 1.37878 * 120.14138 * 0.25259 * 14 12 11 22 22 H 1.09005 * 109.47143 * 299.99690 * 1 2 3 23 23 H 1.09000 * 109.47260 * 59.99838 * 1 2 3 24 24 H 1.08999 * 109.46936 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46829 * 179.97438 * 3 2 1 26 26 H 1.08994 * 109.47083 * 299.99755 * 3 2 1 27 27 H 1.09002 * 109.47494 * 60.00551 * 3 2 1 28 28 H 1.09001 * 109.47229 * 299.99946 * 4 2 1 29 29 H 1.09008 * 109.47244 * 59.99802 * 4 2 1 30 30 H 1.09003 * 109.47359 * 179.97438 * 4 2 1 31 31 H 1.08998 * 109.47100 * 300.00396 * 5 2 1 32 32 H 1.08994 * 109.47035 * 179.97438 * 5 2 1 33 33 H 1.08000 * 120.07145 * 359.97091 * 10 9 7 34 34 H 1.08003 * 119.92943 * 179.97438 * 11 10 9 35 35 H 1.09009 * 109.46824 * 315.59361 * 15 14 12 36 36 H 0.96699 * 114.00141 * 60.00665 * 16 15 14 37 37 H 1.08000 * 120.06933 * 179.72431 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4840 -0.8782 1.5211 6 8 2.0001 -2.2472 1.5211 7 6 2.5965 -3.1067 0.6723 8 8 3.4959 -2.7229 -0.0483 9 6 2.1567 -4.5155 0.6181 10 6 1.1228 -4.9596 1.4449 11 6 0.7172 -6.2766 1.3898 12 6 1.3325 -7.1577 0.5168 13 35 0.7695 -8.9616 0.4473 14 6 2.3587 -6.7234 -0.3059 15 6 3.0233 -7.6892 -1.2528 16 8 2.1621 -7.9330 -2.3667 17 14 4.6287 -6.9618 -1.8564 18 1 5.4680 -6.5804 -0.6923 19 1 4.3481 -5.7582 -2.6799 20 1 5.3495 -7.9668 -2.6782 21 6 2.7773 -5.4106 -0.2564 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.5740 1.7565 0.0005 26 1 2.1206 2.2703 -0.8900 27 1 2.1206 2.2704 0.8900 28 1 2.1207 -1.9059 -1.5211 29 1 2.1206 -0.3643 -2.4112 30 1 3.5740 -0.8778 -1.5214 31 1 2.1207 -0.3644 2.4111 32 1 3.5740 -0.8786 1.5209 33 1 0.6423 -4.2734 2.1266 34 1 -0.0822 -6.6214 2.0290 35 1 3.2217 -8.6275 -0.7346 36 1 1.9429 -7.1403 -2.8752 37 1 3.5806 -5.0743 -0.8952 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13441022_4858416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:00:06 Heat of formation + Delta-G solvation = -109.280299 kcal Electronic energy + Delta-G solvation = -20530.451147 eV Core-core repulsion = 17250.615578 eV Total energy + Delta-G solvation = -3279.835569 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 346.019 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.85679 -40.46502 -37.72541 -37.47232 -33.83281 -32.97217 -30.93004 -29.65459 -28.44877 -28.36588 -28.14580 -26.88913 -24.93807 -23.23680 -21.81537 -19.27199 -18.47859 -17.73658 -17.52822 -17.15631 -16.70548 -16.40823 -15.89928 -15.09046 -15.01689 -14.67859 -14.61213 -14.21865 -13.99761 -13.92750 -13.79101 -13.42442 -13.32444 -13.24513 -13.09657 -13.04152 -12.88786 -12.59176 -12.42372 -12.28664 -11.96982 -11.94130 -11.67866 -11.15734 -10.86531 -10.78284 -10.53783 -10.42936 -10.28638 -9.96867 -0.75805 -0.07266 0.45399 1.01761 1.19563 1.34441 1.41251 1.43103 1.56740 1.81353 1.87581 2.02268 2.35952 2.55431 3.26650 3.46526 3.53976 3.59809 3.93451 3.99035 4.20595 4.24253 4.42604 4.55729 4.68922 4.73361 4.76871 4.79022 4.80215 4.81392 4.82566 4.87301 4.89849 4.95909 5.21700 5.37684 5.52121 5.60027 5.62395 6.57955 6.61820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.056 2.944 3 C -0.452 4.452 4 C -0.458 4.458 5 C -0.256 4.256 6 O -0.328 6.328 7 C 0.490 3.510 8 O -0.509 6.509 9 C -0.118 4.118 10 C -0.044 4.044 11 C -0.098 4.098 12 C -0.044 4.044 13 Br -0.027 7.027 14 C -0.107 4.107 15 C -0.078 4.078 16 O -0.534 6.534 17 Si 0.962 3.038 18 H -0.260 1.260 19 H -0.249 1.249 20 H -0.259 1.259 21 C -0.067 4.067 22 H 0.081 0.919 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.137 0.863 32 H 0.076 0.924 33 H 0.172 0.828 34 H 0.168 0.832 35 H 0.128 0.872 36 H 0.389 0.611 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.485 2.578 2.527 4.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.248 2.752 3 C -0.561 4.561 4 C -0.564 4.564 5 C -0.373 4.373 6 O -0.244 6.244 7 C 0.336 3.664 8 O -0.399 6.399 9 C -0.119 4.119 10 C -0.062 4.062 11 C -0.117 4.117 12 C -0.124 4.124 13 Br 0.060 6.940 14 C -0.109 4.109 15 C -0.189 4.189 16 O -0.341 6.341 17 Si 0.786 3.214 18 H -0.184 1.184 19 H -0.173 1.173 20 H -0.183 1.183 21 C -0.086 4.086 22 H 0.100 0.900 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.155 0.845 32 H 0.095 0.905 33 H 0.190 0.810 34 H 0.185 0.815 35 H 0.145 0.855 36 H 0.238 0.762 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.589 1.741 2.252 3.260 hybrid contribution 0.134 0.769 -0.109 0.788 sum -1.455 2.511 2.143 3.607 Atomic orbital electron populations 1.26135 1.20154 1.04612 1.05204 0.78847 0.66855 0.66118 0.63358 1.26094 1.06441 1.18073 1.05474 1.26562 1.06180 1.07120 1.16494 1.28725 1.05356 0.82917 1.20285 1.86441 1.58627 1.21971 1.57313 1.21266 0.80288 0.87114 0.77776 1.90851 1.29584 1.78414 1.41070 1.19224 1.00801 0.90204 1.01698 1.21796 0.92886 0.95911 0.95652 1.21502 1.00205 0.92271 0.97756 1.22248 0.98080 0.93009 0.99048 1.96839 1.89040 1.10006 1.98114 1.20197 0.97264 0.94514 0.98965 1.24997 1.02285 1.02896 0.88733 1.86563 1.68895 1.37772 1.40839 0.85499 0.75846 0.79349 0.80740 1.18377 1.17314 1.18348 1.21182 0.98608 0.91799 0.97041 0.90030 0.90839 0.91504 0.91200 0.90544 0.89931 0.92948 0.91596 0.91920 0.84541 0.90528 0.81013 0.81462 0.85456 0.76246 0.84215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.65 8.65 113.37 0.98 2.63 16 2 Si 1.06 -4.17 12.12 68.60 0.83 -3.34 16 3 C -0.45 1.89 8.65 113.37 0.98 2.87 16 4 C -0.46 -1.18 7.10 113.37 0.80 -0.38 16 5 C -0.26 0.62 5.40 113.37 0.61 1.23 16 6 O -0.33 -0.30 9.17 -56.28 -0.52 -0.81 16 7 C 0.49 2.03 6.68 70.32 0.47 2.50 16 8 O -0.51 -4.23 12.05 19.91 0.24 -3.99 16 9 C -0.12 -0.21 5.87 -20.10 -0.12 -0.33 16 10 C -0.04 0.12 9.62 22.53 0.22 0.33 16 11 C -0.10 0.29 9.77 22.25 0.22 0.50 16 12 C -0.04 -0.01 6.23 22.39 0.14 0.13 16 13 Br -0.03 -0.03 31.96 -20.37 -0.65 -0.68 16 14 C -0.11 -0.10 5.25 -19.89 -0.10 -0.20 16 15 C -0.08 0.00 2.02 71.24 0.14 0.14 16 16 O -0.53 -0.07 12.72 -148.98 -1.90 -1.96 16 17 Si 0.96 0.84 25.31 68.60 1.74 2.58 16 18 H -0.26 -0.77 7.11 99.48 0.71 -0.07 16 19 H -0.25 -0.35 6.97 99.48 0.69 0.34 16 20 H -0.26 -0.79 7.11 99.48 0.71 -0.08 16 21 C -0.07 -0.15 8.20 22.53 0.18 0.04 16 22 H 0.08 -0.44 7.96 -2.38 -0.02 -0.45 16 23 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 24 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 25 H 0.07 -0.23 7.96 -2.38 -0.02 -0.25 16 26 H 0.08 -0.30 7.96 -2.39 -0.02 -0.32 16 27 H 0.08 -0.50 7.96 -2.39 -0.02 -0.52 16 28 H 0.05 0.27 6.28 -2.39 -0.01 0.25 16 29 H 0.06 0.09 7.96 -2.38 -0.02 0.07 16 30 H 0.06 0.34 7.42 -2.39 -0.02 0.32 16 31 H 0.14 -1.03 7.96 -2.39 -0.02 -1.04 16 32 H 0.08 -0.06 7.52 -2.39 -0.02 -0.08 16 33 H 0.17 -1.22 7.61 -2.91 -0.02 -1.24 16 34 H 0.17 -1.22 8.06 -2.91 -0.02 -1.24 16 35 H 0.13 -0.08 7.18 -2.38 -0.02 -0.10 16 36 H 0.39 -2.34 8.70 -74.06 -0.64 -2.98 16 37 H 0.14 0.38 4.63 -2.91 -0.01 0.37 16 Total: 0.00 -11.67 329.05 5.46 -6.21 By element: Atomic # 1 Polarization: -8.67 SS G_CDS: 1.18 Total: -7.48 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 4.53 Total: 9.48 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -2.17 Total: -6.77 kcal Atomic # 14 Polarization: -3.33 SS G_CDS: 2.57 Total: -0.76 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -0.65 Total: -0.68 kcal Total: -11.67 5.46 -6.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13441022_4858416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.066 kcal (2) G-P(sol) polarization free energy of solvation -11.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds