Wall clock time and date at job start Sat Mar 6 2021 05:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35695 * 117.00158 * 2 1 4 4 C 1.38986 * 119.91140 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.95296 * 0.02562 * 4 3 2 6 6 O 1.42894 * 109.46930 * 284.99882 * 5 4 3 7 7 Si 1.86300 * 109.47390 * 164.99519 * 5 4 3 8 8 C 1.37709 * 120.09558 * 179.74218 * 4 3 2 9 9 C 1.39770 * 119.90253 * 0.51302 * 8 4 3 10 10 C 1.47467 * 120.09180 * 179.73755 * 9 8 4 11 11 O 1.21506 * 120.00129 * 359.73294 * 10 9 8 12 12 O 1.34744 * 119.99983 * 179.72913 * 10 9 8 13 13 C 1.45200 * 116.99977 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47162 * 180.02562 * 13 12 10 15 15 H 1.09004 * 112.85164 * 316.19122 * 14 13 12 16 16 C 1.53778 * 113.61726 * 87.50429 * 14 13 12 17 17 C 1.53778 * 87.08449 * 139.98071 * 16 14 13 18 18 H 1.09000 * 113.61263 * 89.11673 * 17 16 14 19 19 O 1.42902 * 113.61375 * 220.02054 * 17 16 14 20 20 C 1.53784 * 87.08081 * 334.56700 * 17 16 14 21 21 C 1.39815 * 119.81776 * 359.47130 * 9 8 4 22 22 C 1.37659 * 119.90488 * 0.26905 * 21 9 8 23 23 H 1.08995 * 109.47113 * 59.99929 * 1 2 3 24 24 H 1.09005 * 109.46866 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46936 * 299.99589 * 1 2 3 26 26 H 1.09003 * 109.46598 * 44.99532 * 5 4 3 27 27 H 0.96703 * 114.00009 * 180.02562 * 6 5 4 28 28 H 1.48497 * 109.99895 * 298.68148 * 7 5 4 29 29 H 1.48499 * 109.99647 * 59.99735 * 7 5 4 30 30 H 1.07991 * 120.04619 * 180.28098 * 8 4 3 31 31 H 1.08996 * 109.47235 * 60.00089 * 13 12 10 32 32 H 1.09005 * 109.47386 * 299.99721 * 13 12 10 33 33 H 1.08999 * 113.61111 * 254.53134 * 16 14 13 34 34 H 1.08999 * 113.61280 * 25.34517 * 16 14 13 35 35 H 0.96700 * 113.99432 * 277.49158 * 19 17 16 36 36 H 1.09004 * 113.61451 * 270.88641 * 20 17 16 37 37 H 1.08994 * 113.61477 * 139.97943 * 20 17 16 38 38 H 1.07993 * 120.04966 * 180.25144 * 21 9 8 39 39 H 1.08002 * 119.95356 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 3.4332 1.2796 -0.0005 5 6 4.2509 0.0137 -0.0017 6 8 4.2170 -0.5763 1.2993 7 14 6.0128 0.4129 -0.4569 8 6 4.0623 2.5045 -0.0059 9 6 3.3029 3.6779 0.0000 10 6 3.9724 4.9919 0.0002 11 8 5.1857 5.0556 0.0000 12 8 3.2384 6.1219 0.0004 13 6 3.9644 7.3794 -0.0001 14 6 2.9701 8.5423 0.0009 15 1 2.1435 8.3931 -0.6938 16 6 2.5243 8.9705 1.4090 17 6 2.6118 10.4224 0.9097 18 1 1.6863 10.7876 0.4646 19 8 3.1613 11.3261 1.8708 20 6 3.6366 9.9228 -0.1223 21 6 1.9068 3.6025 0.0002 22 6 1.2858 2.3739 0.0002 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.8372 -0.6853 -0.7286 27 1 4.7239 -1.3967 1.3724 28 1 6.0648 0.9980 -1.8208 29 1 6.5880 1.3653 0.5265 30 1 5.1409 2.5584 -0.0109 31 1 4.5906 7.4371 -0.8903 32 1 4.5915 7.4373 0.8897 33 1 1.5116 8.6557 1.6609 34 1 3.2482 8.7308 2.1879 35 1 2.5215 11.6438 2.5225 36 1 4.6652 9.9447 0.2378 37 1 3.5219 10.3767 -1.1066 38 1 1.3164 4.5068 0.0007 39 1 0.2075 2.3148 0.0007 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_13444980_11354868.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:42:26 Heat of formation + Delta-G solvation = -142.842276 kcal Electronic energy + Delta-G solvation = -23433.942010 eV Core-core repulsion = 19696.010047 eV Total energy + Delta-G solvation = -3737.931964 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.123 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.86673 -41.14008 -40.26018 -38.68652 -37.57266 -37.28977 -36.00532 -33.21327 -31.81655 -29.69144 -28.60857 -26.85728 -26.78103 -25.08736 -23.36124 -22.99089 -21.70963 -20.63327 -19.34092 -18.73550 -18.67594 -18.38682 -17.85183 -17.41245 -17.26848 -16.82310 -16.45722 -16.17895 -15.69511 -15.50252 -15.22579 -15.11559 -14.53491 -14.41010 -13.98881 -13.95922 -13.74937 -13.54385 -13.50255 -13.22001 -12.83021 -12.78815 -12.46574 -12.27402 -12.15256 -11.92496 -11.85297 -11.70758 -11.49319 -11.26666 -10.82361 -10.29543 -10.22520 -9.45866 -4.96893 -0.37118 0.02586 1.29823 1.47009 1.55536 1.68908 2.01683 2.05917 2.52659 3.11304 3.30328 3.35517 3.44656 3.55513 3.58250 3.69128 3.80787 3.82380 3.96713 3.98596 4.07795 4.11728 4.13878 4.18320 4.20562 4.37608 4.43824 4.45144 4.55106 4.68220 4.68667 4.70864 4.86983 4.93389 5.00018 5.03149 5.08412 5.26083 5.36460 5.42434 6.12035 6.64064 6.68460 6.76244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.297 6.297 3 C 0.194 3.806 4 C -0.121 4.121 5 C -0.057 4.057 6 O -0.542 6.542 7 Si 0.676 3.324 8 C -0.019 4.019 9 C -0.165 4.165 10 C 0.514 3.486 11 O -0.508 6.508 12 O -0.351 6.351 13 C 0.080 3.920 14 C -0.111 4.111 15 H 0.107 0.893 16 C -0.165 4.165 17 C 0.077 3.923 18 H 0.085 0.915 19 O -0.560 6.560 20 C -0.120 4.120 21 C -0.011 4.011 22 C -0.223 4.223 23 H 0.060 0.940 24 H 0.107 0.893 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.382 0.618 28 H -0.252 1.252 29 H -0.246 1.246 30 H 0.143 0.857 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.380 0.620 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.146 0.854 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.836 -2.553 -1.106 5.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.209 6.209 3 C 0.146 3.854 4 C -0.122 4.122 5 C -0.168 4.168 6 O -0.348 6.348 7 Si 0.577 3.423 8 C -0.037 4.037 9 C -0.166 4.166 10 C 0.359 3.641 11 O -0.397 6.397 12 O -0.268 6.268 13 C 0.006 3.994 14 C -0.129 4.129 15 H 0.125 0.875 16 C -0.202 4.202 17 C 0.018 3.982 18 H 0.103 0.897 19 O -0.365 6.365 20 C -0.158 4.158 21 C -0.029 4.029 22 C -0.242 4.242 23 H 0.079 0.921 24 H 0.125 0.875 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.229 0.771 28 H -0.176 1.176 29 H -0.170 1.170 30 H 0.160 0.840 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.228 0.772 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.164 0.836 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.662 -1.650 -1.562 4.309 hybrid contribution -1.294 0.423 0.287 1.391 sum -4.956 -1.227 -1.276 5.262 Atomic orbital electron populations 1.23239 0.77483 1.04844 1.01815 1.86127 1.21991 1.26091 1.86650 1.19109 0.91368 0.84763 0.90141 1.18554 0.90706 0.93961 1.08992 1.24432 1.08861 0.94291 0.89173 1.86501 1.76200 1.43523 1.28608 0.95394 0.78907 0.87523 0.80450 1.20921 1.00099 0.90051 0.92592 1.18828 0.93833 0.89893 1.14047 1.20931 0.85567 0.84760 0.72809 1.90866 1.14863 1.87936 1.46061 1.86504 1.41229 1.14845 1.84211 1.23114 0.94035 0.79078 1.03142 1.22374 0.99126 0.92291 0.99129 0.87489 1.23796 1.02804 0.96843 0.96778 1.23281 0.96701 0.87876 0.90379 0.89675 1.86534 1.40671 1.64750 1.44566 1.23074 1.00086 0.93326 0.99275 1.21294 0.92833 0.98198 0.90587 1.21319 1.00900 0.91660 1.10292 0.92115 0.87505 0.92037 0.90487 0.77067 1.17628 1.17031 0.84015 0.90624 0.90642 0.90699 0.89013 0.77187 0.88680 0.89999 0.83593 0.83860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 101.05 0.99 0.94 16 2 O -0.30 -0.47 9.81 -18.79 -0.18 -0.65 16 3 C 0.19 0.46 6.67 -39.00 -0.26 0.20 16 4 C -0.12 -0.41 5.30 -104.54 -0.55 -0.97 16 5 C -0.06 -0.07 2.36 36.01 0.09 0.01 16 6 O -0.54 -0.77 12.86 -35.23 -0.45 -1.22 16 7 Si 0.68 0.28 30.18 -169.99 -5.13 -4.85 16 8 C -0.02 -0.08 8.20 -39.20 -0.32 -0.40 16 9 C -0.16 -0.60 5.87 -104.98 -0.62 -1.22 16 10 C 0.51 2.46 7.89 34.49 0.27 2.73 16 11 O -0.51 -3.84 16.13 -19.27 -0.31 -4.15 16 12 O -0.35 -0.98 9.46 -40.61 -0.38 -1.37 16 13 C 0.08 0.12 5.31 37.16 0.20 0.32 16 14 C -0.11 0.06 4.02 -89.80 -0.36 -0.30 16 15 H 0.11 -0.14 8.14 -51.93 -0.42 -0.57 16 16 C -0.16 0.09 7.46 -25.92 -0.19 -0.10 16 17 C 0.08 -0.04 5.21 -25.92 -0.14 -0.18 16 18 H 0.09 -0.18 8.14 -51.93 -0.42 -0.60 16 19 O -0.56 -0.49 13.67 -35.23 -0.48 -0.97 16 20 C -0.12 0.05 7.47 -25.91 -0.19 -0.15 16 21 C -0.01 -0.01 9.61 -39.20 -0.38 -0.39 16 22 C -0.22 -0.13 9.01 -39.49 -0.36 -0.49 16 23 H 0.06 -0.21 7.65 -51.93 -0.40 -0.61 16 24 H 0.11 -0.40 8.14 -51.93 -0.42 -0.82 16 25 H 0.06 -0.18 7.65 -51.93 -0.40 -0.58 16 26 H 0.08 0.00 7.82 -51.93 -0.41 -0.40 16 27 H 0.38 -1.42 8.74 45.56 0.40 -1.02 16 28 H -0.25 -0.75 7.11 56.52 0.40 -0.35 16 29 H -0.25 -0.93 6.76 56.52 0.38 -0.54 16 30 H 0.14 0.71 4.47 -52.49 -0.23 0.48 16 31 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.08 0.15 7.84 -51.93 -0.41 -0.26 16 33 H 0.07 -0.09 8.14 -51.93 -0.42 -0.52 16 34 H 0.09 0.04 7.89 -51.93 -0.41 -0.37 16 35 H 0.38 -1.22 9.12 45.56 0.42 -0.80 16 36 H 0.09 0.05 8.10 -51.93 -0.42 -0.37 16 37 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 38 H 0.15 -0.14 7.60 -52.49 -0.40 -0.54 16 39 H 0.14 -0.32 6.28 -52.49 -0.33 -0.65 16 LS Contribution 332.18 15.07 5.01 5.01 Total: 0.00 -9.45 332.18 -8.10 -17.55 By element: Atomic # 1 Polarization: -5.02 SS G_CDS: -4.34 Total: -9.36 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -1.82 Total: 0.01 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -1.81 Total: -8.36 kcal Atomic # 14 Polarization: 0.28 SS G_CDS: -5.13 Total: -4.85 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -9.45 -8.10 -17.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13444980_11354868.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.289 kcal (2) G-P(sol) polarization free energy of solvation -9.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds