Wall clock time and date at job start Sat Mar 6 2021 05:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35695 * 117.00158 * 2 1 4 4 C 1.38986 * 119.91140 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.95296 * 0.02562 * 4 3 2 6 6 O 1.42894 * 109.46930 * 284.99882 * 5 4 3 7 7 Si 1.86300 * 109.47390 * 164.99519 * 5 4 3 8 8 C 1.37709 * 120.09558 * 179.74218 * 4 3 2 9 9 C 1.39770 * 119.90253 * 0.51302 * 8 4 3 10 10 C 1.47467 * 120.09180 * 179.73755 * 9 8 4 11 11 O 1.21506 * 120.00129 * 359.73294 * 10 9 8 12 12 O 1.34744 * 119.99983 * 179.72913 * 10 9 8 13 13 C 1.45200 * 116.99977 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47162 * 180.02562 * 13 12 10 15 15 H 1.09004 * 112.85164 * 316.19122 * 14 13 12 16 16 C 1.53778 * 113.61726 * 87.50429 * 14 13 12 17 17 C 1.53778 * 87.08449 * 139.98071 * 16 14 13 18 18 H 1.09000 * 113.61263 * 89.11673 * 17 16 14 19 19 O 1.42902 * 113.61375 * 220.02054 * 17 16 14 20 20 C 1.53784 * 87.08081 * 334.56700 * 17 16 14 21 21 C 1.39815 * 119.81776 * 359.47130 * 9 8 4 22 22 C 1.37659 * 119.90488 * 0.26905 * 21 9 8 23 23 H 1.08995 * 109.47113 * 59.99929 * 1 2 3 24 24 H 1.09005 * 109.46866 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46936 * 299.99589 * 1 2 3 26 26 H 1.09003 * 109.46598 * 44.99532 * 5 4 3 27 27 H 0.96703 * 114.00009 * 180.02562 * 6 5 4 28 28 H 1.48497 * 109.99895 * 298.68148 * 7 5 4 29 29 H 1.48499 * 109.99647 * 59.99735 * 7 5 4 30 30 H 1.07991 * 120.04619 * 180.28098 * 8 4 3 31 31 H 1.08996 * 109.47235 * 60.00089 * 13 12 10 32 32 H 1.09005 * 109.47386 * 299.99721 * 13 12 10 33 33 H 1.08999 * 113.61111 * 254.53134 * 16 14 13 34 34 H 1.08999 * 113.61280 * 25.34517 * 16 14 13 35 35 H 0.96700 * 113.99432 * 277.49158 * 19 17 16 36 36 H 1.09004 * 113.61451 * 270.88641 * 20 17 16 37 37 H 1.08994 * 113.61477 * 139.97943 * 20 17 16 38 38 H 1.07993 * 120.04966 * 180.25144 * 21 9 8 39 39 H 1.08002 * 119.95356 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 3.4332 1.2796 -0.0005 5 6 4.2509 0.0137 -0.0017 6 8 4.2170 -0.5763 1.2993 7 14 6.0128 0.4129 -0.4569 8 6 4.0623 2.5045 -0.0059 9 6 3.3029 3.6779 0.0000 10 6 3.9724 4.9919 0.0002 11 8 5.1857 5.0556 0.0000 12 8 3.2384 6.1219 0.0004 13 6 3.9644 7.3794 -0.0001 14 6 2.9701 8.5423 0.0009 15 1 2.1435 8.3931 -0.6938 16 6 2.5243 8.9705 1.4090 17 6 2.6118 10.4224 0.9097 18 1 1.6863 10.7876 0.4646 19 8 3.1613 11.3261 1.8708 20 6 3.6366 9.9228 -0.1223 21 6 1.9068 3.6025 0.0002 22 6 1.2858 2.3739 0.0002 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.8372 -0.6853 -0.7286 27 1 4.7239 -1.3967 1.3724 28 1 6.0648 0.9980 -1.8208 29 1 6.5880 1.3653 0.5265 30 1 5.1409 2.5584 -0.0109 31 1 4.5906 7.4371 -0.8903 32 1 4.5915 7.4373 0.8897 33 1 1.5116 8.6557 1.6609 34 1 3.2482 8.7308 2.1879 35 1 2.5215 11.6438 2.5225 36 1 4.6652 9.9447 0.2378 37 1 3.5219 10.3767 -1.1066 38 1 1.3164 4.5068 0.0007 39 1 0.2075 2.3148 0.0007 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13444980_11354868.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:42:25 Heat of formation + Delta-G solvation = -144.879464 kcal Electronic energy + Delta-G solvation = -23434.030349 eV Core-core repulsion = 19696.010047 eV Total energy + Delta-G solvation = -3738.020303 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.123 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.07393 -41.28156 -40.29054 -38.76389 -37.74796 -37.50276 -36.03787 -33.32772 -31.96219 -29.78168 -28.49095 -26.91488 -26.79245 -25.23845 -23.40297 -23.10248 -21.93518 -20.61395 -19.39326 -18.96480 -18.73422 -18.45380 -17.99829 -17.68169 -17.39092 -16.77186 -16.42374 -16.28417 -15.80886 -15.54605 -15.31358 -15.24645 -14.60124 -14.53375 -14.15259 -14.04994 -13.81378 -13.63790 -13.53235 -13.35707 -12.88102 -12.72469 -12.48965 -12.26893 -12.25564 -12.16295 -11.95356 -11.85881 -11.72287 -11.27449 -10.78623 -10.41825 -10.31023 -9.58384 -5.07683 -0.58526 -0.10778 1.19791 1.21087 1.32397 1.54448 1.89926 2.07608 2.36009 3.14024 3.24977 3.33449 3.42966 3.46314 3.52717 3.69192 3.76841 3.87681 3.89986 3.96054 4.07833 4.09854 4.13778 4.25988 4.30475 4.36511 4.36646 4.53819 4.63166 4.69827 4.71586 4.74288 4.83169 4.91641 4.93718 4.94793 5.05957 5.12185 5.27035 5.33722 6.12307 6.43520 6.85387 6.88880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.310 6.310 3 C 0.190 3.810 4 C -0.143 4.143 5 C -0.058 4.058 6 O -0.559 6.559 7 Si 0.766 3.234 8 C -0.040 4.040 9 C -0.185 4.185 10 C 0.514 3.486 11 O -0.548 6.548 12 O -0.342 6.342 13 C 0.075 3.925 14 C -0.101 4.101 15 H 0.124 0.876 16 C -0.163 4.163 17 C 0.078 3.922 18 H 0.107 0.893 19 O -0.583 6.583 20 C -0.126 4.126 21 C -0.002 4.002 22 C -0.214 4.214 23 H 0.076 0.924 24 H 0.121 0.879 25 H 0.071 0.929 26 H 0.094 0.906 27 H 0.403 0.597 28 H -0.290 1.290 29 H -0.300 1.300 30 H 0.122 0.878 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.396 0.604 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.171 0.829 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.484 -3.037 -1.354 8.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.222 6.222 3 C 0.142 3.858 4 C -0.144 4.144 5 C -0.169 4.169 6 O -0.369 6.369 7 Si 0.674 3.326 8 C -0.058 4.058 9 C -0.186 4.186 10 C 0.361 3.639 11 O -0.441 6.441 12 O -0.258 6.258 13 C 0.002 3.998 14 C -0.120 4.120 15 H 0.142 0.858 16 C -0.201 4.201 17 C 0.019 3.981 18 H 0.125 0.875 19 O -0.392 6.392 20 C -0.163 4.163 21 C -0.020 4.020 22 C -0.232 4.232 23 H 0.095 0.905 24 H 0.139 0.861 25 H 0.090 0.910 26 H 0.112 0.888 27 H 0.254 0.746 28 H -0.218 1.218 29 H -0.229 1.229 30 H 0.139 0.861 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.246 0.754 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.188 0.812 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -6.342 -2.169 -1.799 6.940 hybrid contribution -0.512 0.594 0.392 0.876 sum -6.853 -1.576 -1.407 7.172 Atomic orbital electron populations 1.23559 0.75450 1.06332 1.03051 1.86112 1.24107 1.25708 1.86270 1.19251 0.91143 0.85793 0.89574 1.18828 0.91983 0.94168 1.09444 1.24469 1.08618 0.94127 0.89638 1.86447 1.76888 1.45004 1.28568 0.94624 0.76949 0.85228 0.75845 1.20891 0.99392 0.91227 0.94285 1.18914 0.95130 0.88907 1.15686 1.21265 0.85211 0.85624 0.71768 1.90840 1.16550 1.88463 1.48201 1.86500 1.40823 1.14771 1.83689 1.23267 0.94788 0.79262 1.02518 1.22371 0.98885 0.91036 0.99659 0.85848 1.23762 1.02991 0.97144 0.96224 1.23394 0.97162 0.87569 0.89993 0.87523 1.86490 1.42214 1.65074 1.45414 1.23113 0.99509 0.93575 1.00111 1.21553 0.91617 0.99588 0.89219 1.21677 1.02433 0.90584 1.08552 0.90542 0.86080 0.91022 0.88792 0.74596 1.21761 1.22854 0.86098 0.90936 0.91776 0.89469 0.90569 0.75370 0.90197 0.88832 0.81172 0.80497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.07 9.81 113.37 1.11 1.04 16 2 O -0.31 -0.55 9.81 -90.15 -0.88 -1.43 16 3 C 0.19 0.77 6.67 22.64 0.15 0.92 16 4 C -0.14 -1.11 5.30 -19.81 -0.11 -1.21 16 5 C -0.06 -0.19 2.36 71.24 0.17 -0.02 16 6 O -0.56 -1.64 12.86 -148.98 -1.92 -3.55 16 7 Si 0.77 2.20 30.18 68.60 2.07 4.27 16 8 C -0.04 -0.44 8.20 22.52 0.18 -0.25 16 9 C -0.18 -1.63 5.87 -20.09 -0.12 -1.75 16 10 C 0.51 6.04 7.89 70.25 0.55 6.60 16 11 O -0.55 -10.21 16.13 19.82 0.32 -9.89 16 12 O -0.34 -2.23 9.46 -56.54 -0.54 -2.77 16 13 C 0.08 0.33 5.31 71.98 0.38 0.71 16 14 C -0.10 0.11 4.02 -10.27 -0.04 0.07 16 15 H 0.12 -0.51 8.14 -2.39 -0.02 -0.53 16 16 C -0.16 0.20 7.46 31.12 0.23 0.44 16 17 C 0.08 -0.13 5.21 31.12 0.16 0.03 16 18 H 0.11 -0.63 8.14 -2.39 -0.02 -0.65 16 19 O -0.58 -1.01 13.67 -148.98 -2.04 -3.05 16 20 C -0.13 0.07 7.47 31.12 0.23 0.31 16 21 C 0.00 0.00 9.61 22.51 0.22 0.21 16 22 C -0.21 0.11 9.01 22.33 0.20 0.31 16 23 H 0.08 -0.75 7.65 -2.39 -0.02 -0.77 16 24 H 0.12 -1.18 8.14 -2.38 -0.02 -1.20 16 25 H 0.07 -0.62 7.65 -2.39 -0.02 -0.64 16 26 H 0.09 -0.03 7.82 -2.39 -0.02 -0.05 16 27 H 0.40 -3.18 8.74 -74.06 -0.65 -3.83 16 28 H -0.29 -2.57 7.11 99.48 0.71 -1.86 16 29 H -0.30 -3.50 6.76 99.48 0.67 -2.83 16 30 H 0.12 1.72 4.47 -2.91 -0.01 1.71 16 31 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.06 0.42 7.84 -2.38 -0.02 0.40 16 33 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 34 H 0.08 0.15 7.89 -2.39 -0.02 0.14 16 35 H 0.40 -2.64 9.12 -74.06 -0.68 -3.31 16 36 H 0.08 0.20 8.10 -2.39 -0.02 0.18 16 37 H 0.09 -0.29 8.14 -2.39 -0.02 -0.30 16 38 H 0.17 -0.65 7.60 -2.91 -0.02 -0.67 16 39 H 0.18 -1.38 6.28 -2.91 -0.02 -1.40 16 Total: 0.00 -24.74 332.18 0.13 -24.61 By element: Atomic # 1 Polarization: -15.39 SS G_CDS: -0.23 Total: -15.61 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 3.33 Total: 7.42 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -5.05 Total: -20.69 kcal Atomic # 14 Polarization: 2.20 SS G_CDS: 2.07 Total: 4.27 kcal Total: -24.74 0.13 -24.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13444980_11354868.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.267 kcal (2) G-P(sol) polarization free energy of solvation -24.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds